Predation on mayfly nymph, Baetis rhodani, by native and introduced Gammarus: direct effects and the facilitation of predation by salmonids

1. In a series of laboratory experiments, we assessed the predatory nature of the native Irish amphipod, Gammarus duebeni celticus , and the introduced G. pulex , towards the mayfly nymph Baetis rhodani . We also investigated alterations in microhabitat use and drift behaviour of B . rhodani in the presence of Gammarus , and indirect predatory interactions with juvenile Atlantic salmon, Salmo salar .
2. In trials with single predators and prey, B. rhodani survival was significantly lower when Gammarus were free to interact with nymphs as than when Gammarus were isolated from them. The invader G. pulex reduced the survival of B. rhodani more rapidly than did the native G. d. celticus . Both Gammarus spp. were active predators.
3. In `patch' experiments, B. rhodani survival was significantly lower both when G. pulex and G. d. celticus were present, although the effect of the two Gammarus species did not differ. Again, active predation of nymphs by Gammarus was observed. Significantly more nymphs occurred on the top and sides of a tile, and per capita drifts were significantly higher, when Gammarus were present. Baetis rhodani per capita drift was also significantly higher in the presence of the introduced G. pulex than with the native G. d. celticus .
4.  Gammarus facilitated predation by salmon parr of B. rhodani by significantly increasing fish–nymph encounters on exposed gravel and in the drift. There were no differential effects of the two Gammarus spp. on fish – B . rhodani encounters or consumption.
5. We conclude that Gammarus as a predator can have lethal, nonlethal, direct and indirect effects in freshwaters. We stress the need for recognition of this predatory role when assigning Gammarus spp. to a `Functional Feeding Group'.     

Very-broad-scale assessment of human impacts on river condition

1. Management of whole rivers and river catchments requires a comprehensive set of information about river condition and use, both existing and historical, and the links between them at regional, state or national scales. This paper outlines a new approach to the assessment of river condition, using a small team was able to assess 210 000 km of rivers across more than 3 million km² of Australia in little more than a year. 2. The approach was driven by a hierarchical model of river function, which assumed that broad‐scale catchment characteristics affect local hydrology, habitat features, water quality and, ultimately, aquatic biota. The model provided the basis for selecting important ecologically relevant features that indices should represent. For each reach of each river we derived a biological index and an environmental index based on measures quantifying catchment and hydrological condition, and habitat and water quality condition. Data came from existing state and national databases, satellite images, site measurements and process models. 3. All indices were calculated as deviation from a reference condition, were range‐standardised and were divided into equivalent bands of condition. Amalgamation of index components and of sub‐indices was determined by consideration of their ecological effects; for example, general degradation might be additive, but toxic effects of one component would override all others. 4. Several internal and external validation methods were employed, with the all‐important validation of the final assessments undertaken by comparison with a similar index based on locally measured data. 5. The environmental assessment classified 14% of reaches as largely unmodified, 67% as moderately modified and 19% as substantially modified by human impacts. The biological assessment based on site assessments and modelled data using invertebrates indicated that 70% of reaches were equivalent to reference condition and that 30% were significantly impaired. Catchment disturbance, elevated sediment and nutrient loads, and habitat degradation all contributed to these results. These impacts have all occurred during the last 200 years (post‐European settlement). 6. Partly as a result of the assessments of this study the Australian Government has begun to adopt a more environmentally sustainable approach to broad‐scale water management.     

The Purification of DNA from the Genomes of Paramecium aurelia and Tetrahymena pyriformis1

SYNOPSIS. Methods are described for the recovery of highly purified DNA from Paramecium aurelia and Tetrahymena pyriformis in high yields. Our DNA is only slightly contaminated with RNA and carbohydrate, and little or no protein can be detected. We could not reduce the RNA (orcinol-positive material) by further treatment (sephadex or hydroxyapatite chromatography and preparative CsCl gradients). At the extreme our DNA is contaminated with 15–20% RNA but the real value is most likely considerably lower than this. The DNA we have prepared from Paramecium and Tetrahymena shows all the properties of double-stranded, high molecular weight DNA when characterized by temperature melting, CsCl density gradient centrifugation and hydroxyapatite and sephadex chromatography. When denatured, it absorbs to nitrocellulose filters. The 2 major results of importance from our work reported here are: (1) There is similarity in base composition of DNA from different syngens of Paramecium (28% G+C for syngens 1, 2, 4, 5, and 9 and 29–30% G+C for syngen 8) while there is variation between the syngens of Tetrahymena (24–31% G+C for syngens 1, 4, 7, 10, 11, and 12); (2) the density of any Paramecium DNA varies depending upon whether the cells are grown in the presence of bacteria or in axenic medium. Our results are compatible with observations previously reported for Tetrahymena but contradict those made for Paramecium. The earlier reports of differences in base composition between syngens of Paramecium are probably due in large part to the use of stocks grown on bacteria.     

Estimating species richness and catch per unit effort from boat electro‐fishing in a lowland river in temperate Australia

Abstract Biodiversity estimates are typically a function of sampling effort and in this regard it is important to develop an understanding of taxon‐specific sampling requirements. Northern hemisphere studies have shown that estimates of riverine fish diversity are related to sampling effort, but such studies are lacking in the southern hemisphere. We used a dataset obtained from boat electro‐fishing the fish community along an essentially continuous 13‐km reach of the Murrumbidgee River, Australia, to investigate sampling effort effects on fish diversity estimates. This represents the first attempt to investigate relationships between sampling effort and the detection of fish species in a large lowland river in Australia. Seven species were recorded. Species‐specific patterns in catch per unit effort were evident and are discussed in terms of solitary and gregarious species, recreational fishing and the monitoring of rare and threatened species. There was a requirement to sample substantial lengths of river to describe total species richness of the fish community in this river reach. To this end, randomly allocated sampling effort and use of species richness estimators produced accurate estimates of species richness without the requirement for excessive levels of effort. Twenty operations were required to estimate species richness at this site, highlighting the need for comparable studies of river fish communities in lowland rivers elsewhere in Australia and the southern hemisphere.     

Forest–flood relation still tenuous – comment on 'Global evidence that deforestation amplifies flood risk and severity in the developing world' by C. J. A. Bradshaw, N.S. Sodi, K. S.-H. Peh and B.W. Brook

In a recent paper in this journal, Bradshaw and colleagues analyse country statistics on flood characteristics, land cover and land cover change, and conclude that deforestation amplifies flood risk and severity in the developing world. The study addresses an important and long-standing question, but we identify important flaws. Principal among these are difficulties in interpreting country statistics and the correlation between population and floods. We review current knowledge, which suggests that the removal of trees does not affect large flood events, although associated landscape changes can under some circumstances. Reanalysis of the data analysed by Bradshaw and colleagues shows that population density alone already explains up to 83% of the variation in reported flood occurrences, considerably more than forest cover or deforestation (<10%). Feasible explanations for this statistical finding – whether spurious or causative – are not difficult to conceive. We, therefore, consider the conclusion of Bradshaw and colleagues to be unsupported. However, their study is a valuable first step to show how these or similar flood data might be used to further explore the relationship between land cover and flooding.     

The effect of soil compaction on germination and early growth of Eucalyptus albens and an exotic annual grass

Most agricultural land has been compacted to some degree by heavy machinery or livestock trampling. This legacy is expected to influence the success of tree seedling recruits in farmland areas where natural regeneration is being encouraged. We investigated the impact of soil compaction on seedlings of a woodland eucalypt (Eucalyptus albens) and an annual grass competitor (Vulpia myuros) in a laboratory experiment. Replicate soil cores were created at five bulk density levels; 1.0, 1.1, 1.2, 1.3 or 1.4 Mg m^?3 with a soil water content of 20%. The depth of root penetration declined linearly with increasing bulk density, resulting in a decrease in root depth of around 75% in the most compacted soil compared with the least compacted soil for both species. Shoot length and primary root length did not vary between soil bulk density levels for either species, but seedlings responded to increasing levels of compaction with oblique (non‐vertical) root growth. Results suggest that young seedlings of both E. albens and V. myuros will be more susceptible to surface drying in compacted than uncompacted soils and therefore face a greater risk of desiccation during the critical months following germination. Any competitive advantage that V. myuros may have over E. albens is not evident in differential response to soil compaction.     

Modelling fallen branch volumes in a temperate eucalypt woodland: implications for large senescent trees and benchmark loads of coarse woody debris

Fallen branches are a substantial component of coarse woody debris and a key ecological resource. The depletion of stocks of coarse woody debris since European settlement has contributed to the degradation of Australian grassy box woodlands, including the loss of biodiversity. Restoration options for remnant woodlands include the augmentation of coarse woody debris stocks. However, the extensive modification of grassy box woodlands has left few reference sites for establishing benchmarks to guide such restoration. In this paper we demonstrate a method for predicting fallen branch debris loads in the absence of reference sites, using data from a yellow box–red gum woodland. Our methodology is in two stages: first, the total volume of branch debris under individual trees was modelled; and second, these models were applied to groups of trees to predict stand‐level loads of fallen branch debris. Although the models were developed for yellow box–red gum woodlands, the methodology would be applicable to other communities that lack reference sites. Predicted benchmark loads of fallen branch debris for yellow box–red gum woodland were between 7.0 m³ ha^?1 and 11.9 m³ ha^?1. Large senescing trees contributed the bulk of fallen branch debris. Model predictions indicated a 100‐cm diameter at breast height (dbh) tree was 10 times more likely to produce debris than a 50‐cm dbh tree, and if debris was present a 100‐cm dbh tree produced approximately 10 times the volume of branch debris produced by a 50‐cm dbh tree. These results highlight the importance of large senescing trees for the production of fallen branch debris and support the keystone role of large trees within remnant woodlands, and the need to conserve these structures. Our results also support the active management of regrowth woodland stands to facilitate the progression of individual trees to maturity and senescence. In particular, thinning of regrowth stands may promote the growth of retained trees, ensuring they contribute to fallen branch debris stocks with a minimum time lag.     

Disturbance affects spatial patterning and stand structure of a tropical rainforest tree

The distribution and spatial patterns of plant populations in natural ecosystems have recently received much attention; yet the impacts of human‐induced disturbances on these patterns and underlying processes remain poorly understood. We used the sub‐canopy tree, Ryparosa kurrangii (Achariaceae), to explore the possible effects of such disturbances on stand structure and spatial patterning in an Australian tropical rainforest. We studied three populations that differed in their extent of habitat modification: anthropogenic disturbance (proximate settlement and roads) and internal damage by an invasive alien species, the feral pig (Sus scrofa). Populations were mapped, characterized, and three size cohorts (seedlings, saplings, trees) were analysed using a suite of spatial point pattern analyses (univariate: Diggle's G and F and Ripley's K; bivariate: Diggle's G and Ripley's K). Ryparosa kurrangii has a typical stand structure for a sub‐canopy tree species, but occurs at high densities locally (>400 stems ha^?1). At all sites, the tree cohort were randomly distributed and saplings were spatially aggregated at distances of up to 2–3 m. Between sites there were distinct differences in the size structure and spatial pattern of seedlings, the cohort most affected by recent habitat modification. That is, the least disturbed site had no aggregation among seedlings, the site with the greatest anthropogenic disturbance had many small, clustered seedlings that were spatially associated with trees, and the site with pig damage had clustered seedlings that had no spatial relationship with trees. We propose that habitat modification by anthropogenic and pig disturbance disrupts seed dispersal and establishment regimes, which leads to altered seedling spatial patterns. These disturbances could have long‐term implications for the population structure and health of R. Kurrangii.     

Trophic level asynchrony in rates of phenological change for marine,freshwater and terrestrial environments

Recent changes in the seasonal timing (phenology) of familiar biological events have been one of the most conspicuous signs of climate change. However, the lack of a standardized approach to analysing change has hampered assessment of consistency in such changes among different taxa and trophic levels and across freshwater, terrestrial and marine environments. We present a standardized assessment of 25 532 rates of phenological change for 726 UK terrestrial, freshwater and marine taxa. The majority of spring and summer events have advanced, and more rapidly than previously documented. Such consistency is indicative of shared large scale drivers. Furthermore, average rates of change have accelerated in a way that is consistent with observed warming trends. Less coherent patterns in some groups of organisms point to the agency of more local scale processes and multiple drivers. For the first time we show a broad scale signal of differential phenological change among trophic levels; across environments advances in timing were slowest for secondary consumers, thus heightening the potential risk of temporal mismatch in key trophic interactions. If current patterns and rates of phenological change are indicative of future trends, future climate warming may exacerbate trophic mismatching, further disrupting the functioning, persistence and resilience of many ecosystems and having a major impact on ecosystem services.