Structural messenger RNA contains cytokeratin polymerization and depolymerization signals

We have previously shown that VegT mRNA plays a structural (translation-independent) role in the organization of the cytokeratin cytoskeleton in Xenopus oocytes. The depletion of VegT mRNA causes the fragmentation of the cytokeratin network in the vegetal cortex of Xenopus oocytes. This effect can be rescued by the injection of synthetic VegT RNA into the oocyte. Here, we show that the structural function of VegT mRNA in Xenopus oocyte depends on its combinatory signals for the induction or facilitation and for the maintenance of the depolymerization vs. polymerization status of cytokeratin filaments and that the 300-nucleotide fragment of VegT RNA isolated from the context of the entire molecule induces and maintains the depolymerization of cytokeratin filaments when injected into Xenopus oocytes. A computational analysis of three homologous Xenopus VegT mRNAs has revealed the presence, within this 300-nucleotide region, of a conserved base-pairing (hairpin) configuration that might function in RNA/protein interactions.     

<Emphasis Type="Italic">Sphedamnocarpus andersonii</Emphasis> (Malpighiaceae), a new species from Madagascar

Sphedamnocarpus andersonii, a new species from the Ihorombe Region of Madagascar, is described and illustrated. The twiggy, white-flowered shrubs are characterized by linear leaves, unique in the genus.     

Toward <Emphasis Type="Italic">Escherichia coli</Emphasis> bacteria machine for water oxidation

Nature uses a Mn oxide-based catalyst for water oxidation in plants, algae, and cyanobacteria. Mn oxides are among major candidates to be used as water-oxidizing catalysts. Herein, we used two straightforward and promising methods to form Escherichia coli bacteria/Mn oxide compounds. In one of the methods, the bacteria template was intact after the reaction. The catalysts were characterized by X-ray photoelectron spectroscopy, visible spectroscopy, scanning electron microscopy, high-resolution transmission electron microscopy, diffuse reflectance infrared Fourier transform spectroscopy, Raman spectroscopy, and X-ray diffraction spectrometry. Electrochemical properties of the catalysts were studied, and attributed redox potentials were assigned. The water oxidation of the compounds was examined under electrochemical condition. Linear sweep voltammetry showed that the onsets of water oxidation in our experimental condition for bacteria and Escherichia coli bacteria/Mn oxide were 1.68 and 1.56 V versus the normal hydrogen electrode (NHE), respectively. Thus, the presence of Mn oxide in the catalyst significantly decreased (~?120 mV) the overpotential needed for water oxidation.     

<Emphasis Type="Italic">Yarrowia lipolytica</Emphasis> vesicle-mediated protein transport pathways

Background  

Protein secretion is a universal cellular process involving vesicles which bud and fuse between organelles to bring proteins to their final destination. Vesicle budding is mediated by protein coats; vesicle targeting and fusion depend on Rab GTPase, tethering factors and SNARE complexes. The Génolevures II sequencing project made available entire genome sequences of four hemiascomycetous yeasts, Yarrowia lipolytica, Debaryomyces hansenii, Kluyveromyces lactis and Candida glabrata. Y. lipolytica is a dimorphic yeast and has good capacities to secrete proteins. The translocation of nascent protein through the endoplasmic reticulum membrane was well studied in Y. lipolytica and is largely co-translational as in the mammalian protein secretion pathway.     

First documentation of detailed behaviors of endangered adult Sakhalin taimen <Emphasis Type="Italic">Parahucho perryi</Emphasis> in the Bekanbeushi River system,eastern Hokkaido,Japan, using bio-logging and acoustic telemetry concurrently

Behavior of adult Parahucho perryi was examined using bio-logging and acoustic telemetry concurrently in the Bekanbeushi River system, eastern Hokkaido, Japan, in 2009 and 2010. Based on 46.1–87.9 h data from five P. perryi (69.0–80.0 cm fork length) caught from Lake Akkeshi, they used upstream (n = 2), midstream (n = 3), and downstream (n = 4) habitats. Large variability in diel activity and depth occupation existed in each stream habitat; however, fish in the downstream habitat tended to be more active than those in the upper habitats and mainly occupied shallower depths than mean bottom depth in this habitat.     

Alpha-Synuclein Toxicity on Protein Quality Control,Mitochondria and Endoplasmic Reticulum

Parkinson’s disease (PD) is characterized by the presence of insoluble protein clusters containing α-synuclein. Impairment of mitochondria, endoplasmic reticulum, autophagy and intracellular trafficking proper function has been suggested to be caused by α-synuclein toxicity, which is also associated with the higher levels of ROS found in the aged brain and in PD. Oxidative stress leads to protein oligomerization and aggregation that impair autophagy and mitochondrial dynamics leading to a vicious cycle of organelles damage and neurodegeneration. In this review we focused on the role of α-synuclein dysfunction as a cellular stressor that impairs mitochondria, endoplasmic reticulum, autophagy and cellular dynamics culminating with dopaminergic depletion and the pathogenesis of PD.     

Composition and diversity of cyanobacteria-associated and free-living bacterial communities during cyanobacterial blooms

Lakes undergoing cyanobacterial blooms often exhibit differences between free-living (FL) and cyanobacteria-associated (CA) bacterial assemblages, but previous studies have not compared distinct FL and CA communities across multiple lakes. This project investigated whether FL and CA communities differ from each other in consistent ways across lakes. FL and CA communities were collected from three Ohio (USA) lakes on two sampling dates during cyanobacterial blooms. High-throughput sequencing was used to characterize the communities, and comparisons were made of the composition and diversity of FL and CA communities within and across lakes. Diversity estimates did not vary significantly among lakes nor between CA and FL assemblages. The taxonomic composition of CA communities differed significantly from that of FL communities in Buckeye and Harsha Lakes and in Maumee Bay on one of two sampling dates. CA communities from Buckeye and Harsha Lakes were more similar to each other than to their respective FL communities. Community composition in Maumee Bay on August 18 did not differ between FL and CA habitats. As the bloom progressed, the FL community remained similar in composition to samples collected on August 18, while the CA community became significantly dissimilar. This study is the first cross-lake comparisons of CA and FL communities, uncovering the impacts of habitat type, lake, and sampling date in determining community composition.