遗传密码的新排列和起源探讨

根据DNA核苷酸组分的动态变化规律将遗传密码的传统排列按密码子对GC和嘌呤含量的敏感性进行了重排.新密码表可划分为2个半区（或1/2区）和4个四分区（或1/4区）.就原核生物基因组而言,当GC含量增加时,物种蛋白质组所含的氨基酸倾向于使用GC富集区和嘌呤不敏感半区所编码的氨基酸,它们均使用四重简并密码,对DNA序列的突变具有相对鲁棒性（Robustness）.当GC含量降低时,大多数密码子处于AU富集区和嘌呤敏感半区,这个区域编码的氨基酸具有物理化学性质的多样性.因为当密码子第三位核苷酸（CP3）在嘌呤和嘧啶之间发生转换时,密码子所编码的氨基酸也倾向于发生变化.关于遗传密码的进化存在多种假说,包括凝固事件假说、共进化假说和立体化学假说等,每种假说均试图解释遗传密码所表现出来的某些化学和生物学规律.基于遗传密码的物理化学性质、基因组变异的规律和相关的生物学假说,本研究提出了遗传密码分步进化假说（The Stepwise Evolution Hypothesis for the Genetic Code）.在人们推断的最原始的RNA世界里,原初（Primordial）遗传密码从只能识别嘌呤和嘧啶开始,编码一个或两个简单而功能明确的氨基酸.由于胞嘧啶C的化学不稳定性,最初形成的遗传密码应该仅仅由腺嘌呤A和尿嘧啶U来编码,却可得到一组7个多元化的氨基酸.随着生命复杂性的增加,鸟嘌呤G从主载操作信号的功能中释放出来,再伴随着C的引入,使遗传密码逐步扩展到12,15和20个氨基酸,最终完成全部进化步骤.遗传密码的进化过程同时也伴随以蛋白质为主体的分子机制和细胞过程的进化,包括氨酰tRNA合成酶（AARS）从初始翻译机器上的脱离、DNA作为信息载体而取代RNA以及AARS和tRNA共进化等基本过程.分子机制和细胞过程是生命的基本组成元件,它们不但自己不断地趋于完善,也促使生命体走?     

长期培肥黑土微生物量磷动态变化及影响因素

长期采用两种不同量有机肥(M2、M4)、化肥(NPK)方式培肥黑土,研究微生物量P在作物生长季动态变化．结果表明。施用有机肥微生物量P显著高于施用化肥(NPK)和不施肥(CK),微生物量P分别为M48．75～47．68mg·kg^-1,M2 3．02～37．16mg·kg^-1,NPK1．59～10．62mg·kg^-1,CK0．76～6．74mg·kg^-1之间,波动性较大．M4、M2处理微生物量P最大值出现在抽雄吐丝期,NPK、CK处理最大值出现在大喇叭口期;施肥数量和种类不同所引起的黑土微生物量P的差异并未因季节变化及玉米生育时期影响而明显改变．微生物量P的动态变化与绝大多数黑土生物、理化特性指标的动态变化没有显著的相关性;微生物量P与黑土生物、理化特性(除全钾外),植物氮、磷、钾含量有极显著的正相关关系,与黑土含水量呈显著正相关关系．     

点盾盲蝽属中国种类记述(半翅目,盲蝽科,齿爪盲蝽亚科)

研究了盲蝽科齿爪盲蝽亚科Deraeocorinae点盾盲蝽属AlloeotomusFieber中国种类 ;共记载 5个种 ,其中包括 2新种 (突肩点盾盲蝽A .humeralissp.nov.,云南点盾盲蝽A .yunnanensissp .nov.)和 1个新异名 (A .kerzhneriQi&Nonnaizab =A .montanusQi&Nonnaizab,syn.nov .)。新种模式标本均存于天津南开大学生物系昆虫标本室     

Solution structure and dynamics of the I214V mutant of the rabbit prion protein

Background

The conformational conversion of the host-derived cellular prion protein (PrP^C) into the disease-associated scrapie isoform (PrP^Sc) is responsible for the pathogenesis of transmissible spongiform encephalopathies (TSEs). Various single-point mutations in PrP^Cs could cause structural changes and thereby distinctly influence the conformational conversion. Elucidation of the differences between the wild-type rabbit PrP^C (RaPrP^C) and various mutants would be of great help to understand the ability of RaPrP^C to be resistant to TSE agents.

Methodology/Principal Findings

We determined the solution structure of the I214V mutant of RaPrP^C(91–228) and detected the backbone dynamics of its structured C-terminal domain (121–228). The I214V mutant displays a visible shift of surface charge distribution that may have a potential effect on the binding specificity and affinity with other chaperones. The number of hydrogen bonds declines dramatically. Urea-induced transition experiments reveal an obvious decrease in the conformational stability. Furthermore, the NMR dynamics analysis discloses a significant increase in the backbone flexibility on the pico- to nanosecond time scale, indicative of lower energy barrier for structural rearrangement.

Conclusions/Significance

Our results suggest that both the surface charge distribution and the intrinsic backbone flexibility greatly contribute to species barriers for the transmission of TSEs, and thereby provide valuable hints for understanding the inability of the conformational conversion for RaPrP^C.     

High-throughput antibody generation using multiplexed immunization and immunogen array analysis

In this work, the authors developed a new screening approach using multiplexed immunization and immunogen array analysis to improve the efficiency of antibody screening for high-throughput antibody generation. The immunogen array is based on a 96-well format in which different immunogens and negative as well as positive controls are immobilized in each well, thus making it possible to screen hundreds of antibody candidates simultaneously. To demonstrate this approach, a model of 4 mixed immunogens immunization was employed. In total, 675 antibody candidates were screened before and after established antibody hybridomas in parallel with immunogen arrays and enzyme-linked immunosorbent assay. The signal intensity, specificity, and cross-reactivity of produced antibody candidates were analyzed using a hierarchical cluster algorithm to track the characteristics of antibody candidates during antibody generation, which might reduce the number of false-positive and false-negative binding of antibodies. Moreover, 4 monoclonal antibodies that were produced successfully recognized their corresponding target antigens.     

Identification of two novel clusters of ultrahigh-sulfur keratin-associated protein genes on human chromosome 11

We analyzed two novel clusters of keratin-associated protein (KAP) genes on human chromosome 11 (11p15.5 and 11q13.5) in which we identified two known human KRTAP5 genes, KerA (=KRN1) and KerB, and nine novel KRTAP5 family genes. RT-PCR analysis of these KAP genes showed preferential expression in human hair root, suggesting these gene products are required for hair formation. Based on the deduced amino acid sequences, all these KAP proteins were classified into an ultrahigh-sulfur (UHS) type KAP with high cysteine content (> 30 mol%). These KAPs also showed high glycine and serine contents (average 24.30 and 21.13 mol%, respectively), distinguishing from other UHS/HS KAP families located on human chromosomes 17 and 21. Dot-matrix analysis revealed a significant similarity between these two KAP gene clusters. We postulated a mechanism by which these two KAP gene clusters are generated via genomic duplication of a primordial gene cluster followed by genetic modification during evolution.     

心肺压力感受器持续卸荷对前臂血流、血管阻力及心率变异性谱的影响

低压值下体负压（ＬＢＮＰ）可仅使心肺压力感受器卸荷。采用－２ｋＰａＬＢＮＰ实验结果表明：ＬＢＮＰ既不引起动脉血压变化,也不引起心率改变,但却引起基础胸阻抗（Ｚ。）从对照的２１．８±０．４升高到２２．５±０．５Ω（Ｐ＜０．０１）,前臂血管阻力（ＦＶＲ）从１２．３±０．９升高到１９．９±１．４Ｕ（Ｐ＜０．０１）,前臂血流（ＦＢＦ）从对照时７．１±０．５降低到４．３±０．３ｍｌ·ｍｉｎ￣（－１）·１００ｍｌ￣（－１）,心率变异性谱（ＨＲＶ）未发生任何变化,即心肺压力感受器卸荷时心脏自主神经活动水平与均衡性不受影响。由于ＦＶＲ和ＦＢＦ的变化可间接反映外周血管交感传出活动水平,上述实验结果提示,心肺压力感受器对外周血管及心脏自主神经活动的调节可能存在机能分化现象。     

Maize uroporphyrinogen III methyltransferase: overexpression of the functional gene fragments in Escherichia coli and one-step purification

S-Adenosyl-L-methionine: uroporphyrinogen III methyltransferase (SUMT), a key regulatory enzyme, converts uroporphyrinogen III to precorrin-2 in the porphinoids biosynthesis. In this study, the mature SUMT was signified that the maize SUMT precursor encoded by the open reading frame of maize SUMT cDNA was deleted the first 91 amino acids constituting the postulated signal peptide. Several mature SUMT fusion and deletion mutants were conducted. It actively expressed in Escherichia coli that the mature SUMT, or the truncated one deleting the C-terminal extra 52 amino acids based on SUMT sequence comparisons. On the contrary, it expressed as an inclusion body in E. coli that the mature SUMT fusion mutant, the SUMT precursor, or the mature SUMT deleting the N-terminal 36 amino acids including glycine-rich region involved directly in SAM binding. The purified His6-tagged mature SUMT was homodimer with a molecular weight of 34 kDa, as shown by SDS-PAGE, 52 kDa using gel-filtration chromatography, and 79 kDa by dynamic light scattering assay. Red fluorescent compounds were associated with the recombinant mature SUMT which were identified as sirohydrochlorin and trimethylpyrrocorphin by spectroscopic analysis. This association slightly altered the protein secondary structure confirmed by circular dichroism assay.