The taro monoculture of central New Guinea

An ancient, sustainable, and low risk Colocasiataro monoculture has persisted until modern times among the Mountain Ok peoples of central New Guinea. There is a monoculture-polyculture axis in the region with taro monocultures predominant in the rain forests of the mid-altitude fringe. We argue that when examined from the standpoint of ecosystem simplification, biological variability, and subsistence vulnerability, the taro monocultures exhibit many ecological and systemic properties commonly attributed to polycultures. Monoculture is not an exclusive category; specific cases must be placed in a broader context of the larger ecosystem and the options people have at their disposal. Reduction of the taro monoculture is occurring in response to modernization pressures.     

Forecasting age-related changes in breast cancer mortality among white and black US women: a functional data approach

Background: The disparity in breast cancer mortality rates among white and black US women is widening, with higher mortality rates among black women. We apply functional time series models on age-specific breast cancer mortality rates for each group of women, and forecast their mortality curves using exponential smoothing state-space models with damping. Materials and Methods: The data were obtained from the Surveillance, Epidemiology and End Results (SEER) program of the US [1]. Mortality data were obtained from the National Centre for Health Statistics (NCHS) available on the SEER*Stat database. We use annual unadjusted breast cancer mortality rates from 1969 to 2004 in 5-year age groups (45–49, 50–54, 55–59, 60–64, 65–69, 70–74, 75–79, 80–84). Age-specific mortality curves were obtained using nonparametric smoothing methods. The curves are then decomposed using functional principal components and we fit functional time series models with four basis functions for each population separately. The curves from each population are forecast and prediction intervals are calculated. Results: Twenty-year forecasts indicate an overall decline in future breast cancer mortality rates for both groups of women. This decline appears to be steeper among white women aged 55–73 and black women aged 60–84. For black women under 55 years of age, the forecast rates are relatively stable indicating there is no significant change in future breast cancer mortality rates among young black women in the next 20 years. Conclusion: White women have smooth and consistent patterns in breast cancer mortality rates for all age-groups whereas the mortality rates for black women are much more variable. The projections suggest, for some age groups, black American women may not benefit equally from the overall decline in breast cancer mortality in the United States.     

Ribosomal RNA sequence phylogeny is not congruent with ascospore morphology among species in Ceratocystis sensu stricto

The genus Ceratocystis sensu stricto includes important fungal pathogens of woody and herbaceous plants. This genus is distinguished from species in Ceratocystis sensu lato by the presence of Chalara anamorphs. Ascospore shape has been used extensively in delineating Ceratocystis taxa, which show a large variety of ascospore shapes. Sequence analysis of one region of he 18S ribosomal RNA subunit and two regions of the 28S ribosomal RNA subunit showed that there was a majority of multiple substitutions at nucleotide sites and that there was a low transition/transversion ratio, T = 0.72. Both of these results suggest that these are well established, old species. Ascospore morphology, for the most part, was not congruent with the molecular phylogeny, and the use of morphological characters may be misleading in the taxonomy of these species.      

The crystal structure of an aldehyde reductase Y50F mutant-NADP complex and its implications for substrate binding

In order to understand more fully the structural features of aldo-keto reductases (AKRs) that determine their substrate specificities it would be desirable to obtain crystal structures of an AKR with a substrate at the active site. Unfortunately the reaction mechanism does not allow a binary complex between enzyme and substrate and to date ternary complexes of enzyme, NADP(H) and substrate or product have not been achieved. Previous crystal structures, in conjunction with numerous kinetic and theoretical analyses, have led to the general acceptance of the active site tyrosine as the general acid-base catalytic residue in the enzyme. This view is supported by the generation of an enzymatically inactive site-directed mutant (tyrosine-48 to phenylalanine) in human aldose reductase [AKR1B1]. However, crystallization of this mutant was unsuccessful. We have attempted to generate a trapped cofactor/substrate complex in pig aldehyde reductase [AKR1A2] using a tyrosine 50 to phenylalanine site-directed mutant. We have been successful in the generation of the first high resolution binary AKR-Y50F:NADP(H) crystal structure, but we were unable to generate any ternary complexes. The binary complex was refined to 2.2A and shows a clear lack of density due to the missing hydroxyl group. Other residues in the active site are not significantly perturbed when compared to other available reductase structures. The mutant binds cofactor (both oxidized and reduced) more tightly but shows a complete lack of binding of the aldehyde reductase inhibitor barbitone as determined by fluorescence titrations. Attempts at substrate addition to the active site, either by cocrystallization or by soaking, were all unsuccessful using pyridine-3-aldehyde, 4-carboxybenzaldehyde, succinic semialdehyde, methylglyoxal, and other substrates. The lack of ternary complex formation, combined with the significant differences in the binding of barbitone provides some experimental proof of the proposal that the hydroxyl group on the active site tyrosine is essential for substrate binding in addition to its major role in catalysis. We propose that the initial event in catalysis is the binding of the oxygen moiety of the carbonyl-group of the substrate through hydrogen bonding to the tyrosine hydroxyl group.     

Crystal structure of an aldehyde reductase Y50F mutant-NADP complex and its implications for substrate binding

Pig aldehyde reductase containing the active site mutation tyrosine(50) to phenylalanine has been crystallized in the presence of the cofactor NADP(H) to a resolution of 2.2 A. This structure clearly shows loss of the tyrosine hydroxyl group and no other significant perturbations compared with previously determined structures. The mutant binds cofactor (both oxidized and reduced) more tightly than the wild-type enzyme but shows a complete lack of binding of the aldehyde reductase inhibitor barbitone, as determined by fluorescence titrations. Numerous attempts at preparing a ternary complex with a range of small aldehyde substrates were unsuccessful. This result, in addition to the inability of the mutant protein to bind the inhibitor, provides strong evidence for the proposal that the tyrosine hydroxyl group is essential for substrate binding in addition to catalysis.     

‘Shrinking Worlds’: Cronulla,Anti‐Lebanese Racism and Return Visits in the Sydney Hadchiti Lebanese Community

By drawing on observations gained from ethnographic fieldwork in western Sydney with immigrants who are Maronite Catholics from Hadchit, North Lebanon, I demonstrate the pervasiveness of anti‐Lebanese racism in Australia and the way it cuts across class, gender and religion within the Lebanese community. My fieldwork was conducted around the time of two pivotal events: the 2005 Cronulla Riots in Sydney and the July 2006 war in Lebanon. By focusing on the experience of racism within the Hadchiti community, I show that the problems the Lebanese face in Australia cannot be attributed only to their economic disadvantage, low education and religious difference. On the contrary, the Hadchiti experience shows that Australia has a ‘glass ceiling’ and that there are distinct limits to the ability of successful Lebanese to translate their success into national belonging in Australian society. This has been particularly acute for the second generation of Hadchitis in Australia and has contributed to their search for transnational belonging back in Lebanon. During return visits to Hadchit, members of the second generation strive to find a place in the society their parents left behind, only to discover that they are considered to be ‘Australian’ rather than ‘Lebanese’. Thus, they are trapped in a migration process that renders them out of place in both Australia and Lebanon.     

Nuclear staining with alum hematoxylin

The hematoxylin and eosin stain is the most common method used in anatomic pathology, yet it is a method about which technologists ask numerous questions. Hematoxylin is a natural dye obtained from a tree originally found in Central America, and is easily converted into the dye hematein. This dye forms coordination compounds with mordant metals, such as aluminum, and the resulting lake attaches to cell nuclei. Regressive formulations contain a higher concentration of dye than progressive formulations and may also contain a lower concentration of mordant. The presence of an acid increases the life of the solution and in progressive solutions may also affect selectivity of staining. An appendix lists more than 60 hemalum formulations and the ratio of dye to mordant for each.     

Mineral nutrition and in vitro growth of Gerbera hybrida (Asteraceae)

The effects of mineral nutrient were examined on in vitro growth of Gerbera hybrida (G. jamesonii?×?G. viridifolia), specifically Gerbera hybrida cv. Pasadena. Four types of experiments were conducted to quantify the effects of mineral nutrients on four in vitro growth responses (quality, shoot number, leaf number, and shoot height) of gerbera and included groups of mineral nutrients (macros/mesos, micros, and Fe), individual salts (CuSO₄·5H₂O, MnSO₄·4H₂O, ZnSO₄·7H₂O, and Fe/EDTA), and the specific ions NO₃ ^?, NH₄ ⁺, and K⁺. Experiments included mixture-amount designs that are essential for separating the effects of proportion and concentration. Highly significant effects were observed in all experiments, but the mineral nutrients with the largest effects varied among the four growth responses. For example, leaf number was strongly affected by the macronutrient group in one experiment and by NH₄ ⁺ and K⁺, which were in the macronutrient group, in the NO₃ ^?/NH₄ ⁺/K⁺ ion-specific experiment, whereas quality was strongly affected by the micronutrients ZnSO₄ and Fe/EDTA. Because mineral nutrient effects varied significantly with the response measured, defining an appropriate formulation requires a clear definition of “optimal” growth.     

Protein immobilization to alumina supports: II. Papain immobilization to alumina via organophosphate linkers

Particulate aluminum oxides (alumina) were examined as supports for the immobilization of the proteolytic enzyme papain. Two alumina supports termed C1 and CPC were derivatized using organic phosphate linkers to create free carboxyl groups using a two-step process. Papain binding to these derivatized aluminas was performed using the water soluble carbodiimide 1-ethyl-3-(dimethylaminopropyl) carbodiimide. Reactions were optimal at 10 mM carbodiimide. The immobilized protein showed similar kinetic constants when compared to the solution protein. The pH dependence and thermal stability were essentially identical. The immobilized papain showed a blue shift in the intrinsic fluorescence emission maxima. Papain modified with the active site-specific fluorescent probe acrylodan showed overlapping emission maxima. These results are interpreted as retention of the hydrophobic environment of the active site with a perturbation in the structure of the rest of the protein caused by its association with the negatively charged surface. (c) 1992 John Wiley & Sons, Inc.