A study of growth form in genets of Trifolium repens L. as affected by intra- and interplant contacts

Summary The stolon apices of genets of Trifolium repens were mapped in the field, and the distance moved by each apex eight days after mapping was measured. The spatial distribution of the apices was investigated using the Voronoi polygon construct. The spacing of apices was shown to differ between genets, and to be influenced by the proximity of neighbouring genets. The rate of extension of stolons was positively correlated with polygon area. The differences observed were interpreted in terms of differences in the positions of genets along the phalanx-guerilla continuum of growth forms. Mechanisms which may promote the intermingling of genets are discussed.     

The spatial distribution of soil organic carbon in tidal wetland soils of the continental United States

Tidal wetlands contain large reservoirs of carbon in their soils and can sequester carbon dioxide (CO₂) at a greater rate per unit area than nearly any other ecosystem. The spatial distribution of this carbon influences climate and wetland policy. To assist with international accords such as the Paris Climate Agreement, national‐level assessments such as the United States (U.S.) National Greenhouse Gas Inventory, and regional, state, local, and project‐level evaluation of CO₂ sequestration credits, we developed a geodatabase (CoBluCarb) and high‐resolution maps of soil organic carbon (SOC) distribution by linking National Wetlands Inventory data with the U.S. Soil Survey Geographic Database. For over 600,000 wetlands, the total carbon stock and organic carbon density was calculated at 5‐cm vertical resolution from 0 to 300 cm of depth. Across the continental United States, there are 1,153–1,359 Tg of SOC in the upper 0–100 cm of soils across a total of 24 945.9 km² of tidal wetland area, twice as much carbon as the most recent national estimate. Approximately 75% of this carbon was found in estuarine emergent wetlands with freshwater tidal wetlands holding about 19%. The greatest pool of SOC was found within the Atchafalaya/Vermilion Bay complex in Louisiana, containing about 10% of the U.S. total. The average density across all tidal wetlands was 0.071 g cm^?3 across 0–15 cm, 0.055 g cm^?3 across 0–100 cm, and 0.040 g cm^?3 at the 100 cm depth. There is inherent variability between and within individual wetlands; however, we conclude that it is possible to use standardized values at a range of 0–100 cm of the soil profile, to provide first‐order quantification and to evaluate future changes in carbon stocks in response to environmental perturbations. This Tier 2‐oriented carbon stock assessment provides a scientific method that can be copied by other nations in support of international requirements.     

Nonlinear CO2 flux response to 7 years of experimentally induced permafrost thaw

Rapid Arctic warming is expected to increase global greenhouse gas concentrations as permafrost thaw exposes immense stores of frozen carbon (C) to microbial decomposition. Permafrost thaw also stimulates plant growth, which could offset C loss. Using data from 7 years of experimental Air and Soil warming in moist acidic tundra, we show that Soil warming had a much stronger effect on CO₂ flux than Air warming. Soil warming caused rapid permafrost thaw and increased ecosystem respiration (R_eco), gross primary productivity (GPP), and net summer CO₂ storage (NEE). Over 7 years R_eco, GPP, and NEE also increased in Control (i.e., ambient plots), but this change could be explained by slow thaw in Control areas. In the initial stages of thaw, R_eco, GPP, and NEE increased linearly with thaw across all treatments, despite different rates of thaw. As thaw in Soil warming continued to increase linearly, ground surface subsidence created saturated microsites and suppressed R_eco, GPP, and NEE. However R_eco and GPP remained high in areas with large Eriophorum vaginatum biomass. In general NEE increased with thaw, but was more strongly correlated with plant biomass than thaw, indicating that higher R_eco in deeply thawed areas during summer months was balanced by GPP. Summer CO₂ flux across treatments fit a single quadratic relationship that captured the functional response of CO₂ flux to thaw, water table depth, and plant biomass. These results demonstrate the importance of indirect thaw effects on CO₂ flux: plant growth and water table dynamics. Nonsummer R_eco models estimated that the area was an annual CO₂ source during all years of observation. Nonsummer CO₂ loss in warmer, more deeply thawed soils exceeded the increases in summer GPP, and thawed tundra was a net annual CO₂ source.     

Immobilization of Heavy Metals in Soil Using Natural and Waste Materials for Vegetation Establishment on Contaminated Sites

Contaminated land is increasingly becoming an important issue worldwide. Many contaminants are persistent in soil for a large number of years. With the increase in public awareness regarding the consequences of contaminated soil, many researchers are concentrating on developing cost-effective and socially acceptable soil remediation technologies. Soils of many sites, which have been left derelict after industrial decline, harbor a broad suite of metal and organic contaminants. Land where such contaminants are deemed to pose a significant risk to receptors is considered contaminated under modern guidance. Remediation to break identified pollutant linkages would precede reclamation and plant establishment. One approach to break the pollutant receptor linkage is to utilize materials that effectively create soil conditions that immobilize contaminants whilst providing essential plant growth properties in terms of nutrition and water holding capacity. Materials that may achieve this include: 1) composts derived from materials such as sewage sludges and other municipal sources; 2) natural or synthetic zeolites; or 3) industrial by-products such as red-mud or other iron-rich materials such as iron grit or iron oxyhydroxides. Remediation techniques that utilize such materials may be cost-effective compared to more traditional methods and may effectively divert materials from the waste stream and could thereby make a dual contribution to sustainable development.     

Streptomyces as symbionts: an emerging and widespread theme?

Streptomyces bacteria are ubiquitous in soil, conferring the characteristic earthy smell, and they have an important ecological role in the turnover of organic material. More recently, a new picture has begun to emerge in which streptomycetes are not in all cases simply free-living soil bacteria but have also evolved to live in symbiosis with plants, fungi and animals. Furthermore, much of the chemical diversity of secondary metabolites produced by Streptomyces species has most likely evolved as a direct result of their interactions with other organisms. Here we review what is currently known about the role of streptomycetes as symbionts with fungi, plants and animals. These interactions can be parasitic, as is the case for scab-causing streptomycetes, which infect plants, and the Streptomyces species Streptomyces somaliensis and Streptomyces sudanensis that infect humans. However, in most cases they are beneficial and growth promoting, as is the case with many insects, plants and marine animals that use streptomycete-produced antibiotics to protect themselves against infection. This is an exciting and newly emerging field of research that will become increasingly important as the search for new antibiotics switches to unusual and under-explored environments.     

Consequences of fisheries-induced evolution for population productivity and recovery potential

Fisheries-induced evolution has become a major branch of the research on anthropogenic and contemporary evolution. Within the conservation context, fisheries-induced evolution has been hypothesized to negatively affect the persistence and recovery potential of depleted populations, but this has not been explicitly investigated. Here, we investigate how fisheries-induced evolution of Atlantic cod (Gadus morhua L.) life histories affects per capita population growth rate, a parameter negatively correlated with extinction risk. We simulate the evolutionary and ecological dynamics of a cod population for a 100 year period of size-selective harvesting, followed thereafter by 300 years of recovery. To evaluate the relative importance of harvest-induced evolution, we either allowed life histories to evolve during and after the fishing period, or we assumed that fisheries-induced evolution was absent. Population growth rates did not differ appreciably between the evolutionary and non-evolutionary simulation scenarios, despite the emergence of rather pronounced differences in life histories. The underlying reason was that in the absence of fishing the cumulative lifetime reproductive outputs were very similar among differing life histories. The results suggest that fisheries-induced evolution might not always have as clear-cut an effect on population growth rate as previously anticipated.     

Role of partial protein unfolding in alcohol‐induced protein aggregation

Proteins aggregate in response to various stresses including changes in solvent conditions. Addition of alcohols has been recently shown to induce aggregation of disease‐related as well as nondisease‐related proteins. Here we probed the biophysical mechanisms underlying alcohol‐induced protein aggregation, in particular the role of partial protein unfolding in aggregation. We have studied aggregation mechanisms due to benzyl alcohol which is used in numerous biochemical and biotechnological applications. We chose cytochrome c as a model protein, for the reason that various optical and structural probes are available to monitor its global and partial unfolding reactions. Benzyl alcohol induced the aggregation of cytochrome c in isothermal conditions and decreased the temperature at which the protein aggregates. However, benzyl alcohol did not perturb the overall native conformation of cytochrome c. Instead, it caused partial unfolding of a local protein region around the methionine residue at position 80. Site‐specific optical probes, two‐dimensional NMR titrations, and hydrogen exchange all support this conclusion. The protein aggregation temperature varied linearly with the melting temperature of the Met80 region. Stabilizing the Met80 region by heme iron reduction drastically decreased protein aggregation, which confirmed that the local unfolding of this region causes protein aggregation. These results indicate that a possible mechanism by which alcohols induce protein aggregation is through partial rather than complete unfolding of native proteins. Proteins 2010. © Wiley‐Liss, Inc.