Heat stress in grapevine: the pros and cons of acclimation

Heat stress is a major limiting factor of grapevine production and quality. Acclimation and recovery are essential to ensure plant survival, and the recovery mechanisms can be independent of the heat response mechanisms. An experimental set up with and without acclimation to heat followed by recovery [stepwise acclimation and recovery (SAR) and stepwise recovery (SR), respectively] was applied to two grapevine varieties, Touriga Nacional (TN), and Trincadeira (TR), with different tolerance to abiotic stress. Major differences were found between leaves of SAR and SR, especially after recovery; in SAR, almost all parameters returned to basal levels while in SR they remained altered. Acclimation led to a swifter and short‐term antioxidative response, affecting the plant to a lesser extent than SR. Significant differences were found among varieties: upon stress, TN significantly increased ascorbate and glutathione reduction levels, boosting the cell's redox‐buffering capacity, while TR needed to synthesize both metabolites, its response being insufficient to keep the redox state at working levels. TR was affected by stress for a longer period and the up‐regulation pattern of antioxidative stress genes was more obvious. In TN, heat shock proteins were significantly induced, but the canonical heat‐stress gene signature was not evident probably because no shutdown of the housekeeping metabolism was needed.     

An integrated quantification method to increase the precision,robustness, and resolution of protein measurement in human plasma samples

Background

Current quantification methods for mass spectrometry (MS)-based proteomics either do not provide sufficient control of variability or are difficult to implement for routine clinical testing.

Results

We present here an integrated quantification (InteQuan) method that better controls pre-analytical and analytical variability than the popular quantification method using stable isotope-labeled standard peptides (SISQuan). We quantified 16 lung cancer biomarker candidates in human plasma samples in three assessment studies, using immunoaffinity depletion coupled with multiple reaction monitoring (MRM) MS. InteQuan outperformed SISQuan in precision in all three studies and tolerated a two-fold difference in sample loading. The three studies lasted over six months and encountered major changes in experimental settings. Nevertheless, plasma proteins in low ng/ml to low μg/ml concentrations were measured with a median technical coefficient of variation (CV) of 11.9% using InteQuan. The corresponding median CV using SISQuan was 15.3% after linear fitting. Furthermore, InteQuan surpassed SISQuan in measuring biological difference among clinical samples and in distinguishing benign versus cancer plasma samples.

Conclusions

We demonstrated that InteQuan is a simple yet robust quantification method for MS-based quantitative proteomics, especially for applications in biomarker research and in routine clinical testing.

Electronic supplementary material

The online version of this article (doi:10.1186/1559-0275-12-3) contains supplementary material, which is available to authorized users.     

Characterization of heterotypic interaction effects <Emphasis Type="Italic">in vitro</Emphasis> to deconvolute global gene expression profiles in cancer

Background  

Perturbations in cell-cell interactions are a key feature of cancer. However, little is known about the systematic effects of cell-cell interaction on global gene expression in cancer.     

以疏勒河流域为例的“山水林田湖草”生态修复多尺度耦合框架及方法

为解决过去保护修复工程只考虑单要素、单一类型生态系统的问题,我国于2016年开展了“山水林田湖草”生态修复工程,旨在通过整体、系统、综合的方法对各类生态系统进行统筹治理。然而,目前的工程治理中仍然存在对系统内部及系统间耦合概念理解不充分、系统耦合机制不明晰、对“尺度”的关注不足、缺少科学的分析方法等问题,制约了保护修复的成效。对此,首先将多个尺度下的耦合研究方法进行归纳总结,并以国家重点冰川水源涵养区及生物多样性保护优先区——疏勒河流域为例,将耦合方法用于分析要素间、自然生态系统间的耦合关系,最后基于该实例研究,提出多尺度耦合分析框架与“升尺度”保护修复模式,以期帮助相关决策者明晰“山水工程”中要素、系统间的耦合关系,增强治理的科学性与有效性,进而推进我国社会与环境的可持续发展。     

The phytogeographical studies of Thermopsis (Fabaceae)

The present article is the first comprehensive treatment of phytogeography of Thermopsis (Fabaceae) in the world. Thermopsis is one of the few genera within Fabaceae with the distribution pattern of the East Asia-North American disjunction. The distribution patterns of 5 recognized sections (including a new one) covering 21 species in Thermopsis are analyzed, and the results show four centres of frequency of the genus: the Eastern Asiatic Region (9 spp. / 3 sects., including 4 endemic species), the Irano-Turanian Region (7 spp./3 sects., including 3 endemic species), the Rocky Mountain Region (7 spp./2 sects., all endemic), and the Atlantic North American Region (3 spp. / 1 sect., all endemic). In the light of the fact that most species and sections, a number of phylogenetic series of the genus, and the most primitive sections and most advanced sections in Thermopsis occur in the East Asia, the Eastern Asiatic Region might be the centre of diversity of the genus. As the Irano-Turanian Region and the Rocky Mountain Region were just second to that of Eastern Asiatic Region in number of sections and species, and many polyploids appeared in these regions, they were considered as the secondary centres of distribution and speciation of the genus. The speciation looks to be frequent and complex in these regions, and many new taxa have been described from there while many new reduced or incorporated taxa have happened over there. However, recent molecular data has shown that two reduced taxa of Thermopsis are distinct in these regions. Based on the modern distribution patterns and evolutionary trends in morphological characters of the genus, and available fossil record of the genus and the historical geology, we speculate that Thermopsis had already existed on Eurasia and North America before the Late Miocene, and probably originated from an ancestral form of Sophora-like taxa with lupine alkaloids somewhere in the Laurasia in the Early Tertiary or Late Cretaceous. After the separation of the two continents, species on different continents developed distinctly under influences of different evolutionary factors. In Asia, the late Tertiary orogeny, disappearing of the Tethys and aridity and freezing caused by the Quaternary glaciation were the main forces to promote the speciation and evolutionary processes, whereas in North America it was the Quaternary glaciation and the orogeny of partial area to promote evolution of the genus. According to the evolutionary trends in Thermopsis and the distribution pattern of the primitive taxa, Sino-Japanese Subregion of Eastern Asiatic Region may be considered asthe centre of primitive forms of Thermopsis.     

人TRAIL基因cDNA的克隆及其在COS-7细胞中的表达

TRAIL(TNF-related apoptosis inducing ligand)是最近克隆的肿瘤坏死因子(TNF)家族的新成员,由于它的蛋白质结构和生物学效应类似于FAS/APO-1L,因此,也被称为APO-2L.     

几种旱生灌木种子萌发对干旱胁迫的响应

以不同渗透势的PEG(6 0 0 0 )溶液 (- 0 .3～ - 2 .7MPa)为模拟干旱胁迫条件 ,研究了柠条 (Caraganakorshinskii)、花棒 (Hedysarumscoparium)和白沙蒿 (Artemisiasphaerocephala)种子发芽、幼苗生长和累积吸水率对干旱胁迫的响应 ,讨论了参试种子发芽特性、初生根长度与幼苗建植成活率的关系 .结果表明 ,干旱胁迫下柠条发芽率最高 ,其次为花棒 ,白沙蒿最低 . - 0 .3～ - 0 .6MPa渗透势下白沙蒿发芽 10d的初生根长度显著大于花棒和柠条 (P <0 .0 5 ) ,三者的测量值依次为 7.9、4 .5和 3.1cm .干旱胁迫条件下参试种子发芽率与种子 72h累积吸水率均呈极显著的正相关 (P <0 .0 1) .     

非酒精性脂肪肝大鼠脂质代谢及病理变化的动态观察

目的通过高脂饮食建立NAFLD大鼠模型,连续监测4～16周模型动物肝功能、脂质代谢、胰岛素抵抗及肝细胞凋亡在NAFLD进展过程中的变化情况及相互关系,为该模型在脂肪肝发病机制、脂肪肝治疗药物评价等方面的应用提供参考依据。方法 SD大鼠50只,除正常对照组外,其余动物饲喂高脂饲料,分别检测4,8,12,16周大鼠血清GLU、CHO、TG、HDL、LDL、GPT、GOT及胰岛素水平,肝脏组织切片进行病理学及细胞凋亡观察,进一步分析大鼠肝功能、脂质代谢、胰岛素抵抗及肝细胞凋亡对肝组织病理改变的影响。结果模型组大鼠4周后就出现肝功能损伤,脂质代谢紊乱、胰岛素抵抗,肝细胞凋亡8 W后明显增加,肝细胞脂变及炎症为肝组织病理变化的主要特征,且造模时间越长,病变程度越严重。结论经过高脂饲料的喂养,SD大鼠在4～16周内可形成病变程度逐步加重的NAFLD模型,肝功能损伤,脂质代谢紊乱及肝细胞凋亡是引起非酒精性脂肪肝中脂肪变性和炎症的重要因素,该模型可应用于脂肪肝治疗药物评价等方面。     

海藻酸微囊替代DMSO和FBS的STO细胞冷冻保存研穷

目的：改进现有的细胞冷冻保存方法,建立一个不舍二甲基亚砜（DMSO）和血清（FBS）的高效冷冻保存方法,为细胞治疗等临床实践提供优质细胞。方法：海藻酸微囊包埋鼠胚成纤维细胞（STO细胞）后用不含DMSO和FBS的冷冻保存液进行冷冻保存。,设四个对照组：添加10％DMSO和20％FBS的组、仅添加10％DMSO的组、仅添加20％FBS、DMSO和FBS均不添加组。在冷冻前后对各实验组细胞用台盼兰染色,进行细胞计数,计算细胞存活率,同时利用溴乙锭的二聚物（EthD）、钙黄绿素-AM（Calcein—AM）进行染色观察细胞的形态,且进一步验证细胞存活率;解冻复苏后用MTT法评估细胞的增殖速度和生长活力。结果：冷冻保存30天后对各组的细胞数量、细胞存活率、细胞形态和解冻复苏后细胞的生长活力进行比较发现,海藻酸微囊包埋冷冻组的细胞数、细胞存活率、细胞形态和生长活力均与添加DMSO和FBS的组之间无显著性差异,而与其它三个对照组呈显著性差异。结论：使用海藻酸微囊替代DMSO和FBS保存STO细胞,能有效的维持细胞形态、数量、存活率,同时不影响细胞的生长活力,从而建立了一个不含DMS0和FBS的高效冷冻保存方法。