Advances in the study of CDC42 in the female reproductive system

CDC42 is a member of the Rho‐GTPase family and is involved in a variety of cellular functions including regulation of cell cycle progression, constitution of the actin backbone and membrane transport. In particular, CDC42 plays a key role in the establishment of polarity in female vertebrate oocytes, and essential to this major regulatory role is its local occupation of specific regions of the cell to ensure that the contractile ring is assembled at the right time and place to ensure proper gametogenesis. The multifactor controlled ‘inactivation‐activation’ process of CDC42 also allows it to play an important role in the multilevel signalling network, and the synergistic regulation of multiple genes ensures maximum precision during gametogenesis. The purpose of this paper is to review the role of CDC42 in the control of gametogenesis and to explore its related mechanisms, with the aim of further understanding the great research potential of CDC42 in female vertebrate germ cells and its future clinical translation.     

Purification and Characterization of Recombinant Truncated Human Interleukin-11 Expressed as Fusion Protein in <Emphasis Type="Italic">Escherichia coli</Emphasis>

Mature human interleukin-11 (HuIL-11) is a cytokine consisting of 178 amino acid residues that results from scission of the N-terminal signal peptide, consisting of 21 amino acid residaues, from the corresponding nascent polypeptide. A DNA fragment encoding a truncated HuIL-11 (trHuIL-11), with an additional 5 amino acid residues removed from the N-terminus, was cloned into vector pGEX-2T between the BamHI site and the EcoRI site. Upon transformation with Escherichia coli BL21, the construct over-produced a glutathione S-transferase (GST)-fused protein in a soluble form after IPTG induction. The fusion protein was initially fractionated with butyl-Sepharose 4 fast flow column and by affinity chromatography using a GSH-Sepharose 4B column. On-site enzymatic release with thrombin gave the target protein at 96% purity as judged by SDS-PAGE and HPLC. Expression of the interleukin as a GST-fused protein thus greatly improved downstream processing. Subsequent biological activity assay suggested that trHuIL-11 had similar activity profile to the naturally produced sample and may be a promising candidate for further development as biopharmaceutical.     

A super pan-genomic landscape of rice

Pan-genomes from large natural populations can capture genetic diversity and reveal genomic complexity. Using de novo long-read assembly, we generated a graph-based super pan-genome of rice consisting of a 251-accession panel comprising both cultivated and wild species of Asian and African rice. Our pan-genome reveals extensive structural variations (SVs) and gene presence/absence variations. Additionally, our pan-genome enables the accurate identification of nucleotide-binding leucine-rich repeat genes and characterization of their inter- and intraspecific diversity. Moreover, we uncovered grain weight-associated SVs which specify traits by affecting the expression of their nearby genes. We characterized genetic variants associated with submergence tolerance, seed shattering and plant architecture and found independent selection for a common set of genes that drove adaptation and domestication in Asian and African rice. This super pan-genome facilitates pinpointing of lineage-specific haplotypes for trait-associated genes and provides insights into the evolutionary events that have shaped the genomic architecture of various rice species.Subject terms: Structural variation, Comparative genomics     

Effects of individually silenced N-glycosylation sites and non-synonymous single-nucleotide polymorphisms on the fusogenic function of human syncytin-2

ABSTRACT

The placental syncytiotrophoblast, which is formed by the fusion of cytotrophoblast cells, is indispensable for the establishment and maintenance of normal pregnancy. The human endogenous retrovirus envelope glycoprotein syncytin-2 is the most important player in mediating trophoblast cell-cell fusion as a fusogen. We constructed expression plasmids of wild-type and 21 single-amino-acid substitution mutants of syncytin-2, including 10 N-glycosylation sites individually silenced by mutagenizing N to Q, 1 naturally occurring single-nucleotide polymorphism (SNP) N118S that introduced an N-glycosylation site, and another 10 non-synonymous SNPs located within important functional domains. We observed that syncytin-2 was highly fusogenic and that the mutants had different capacities in merging 293T cells. Of the 21 mutants, N133Q, N312Q, N443Q, C46R (in the CXXC motif) and R417H (in the heptad repeat region and immunosuppressive domain) lost their fusogenicity, whereas N332Q, N118S, T367M (in the fusion peptide), V483I (in the transmembrane domain) and T522M (in the cytoplasmic domain) enhanced the fusogenic activity. We also proved that N133, N146, N177, N220, N241, N247, N312, N332 and N443 were all glycosylated in 293T cells. A co-immunoprecipitation assay showed compromised interaction between mutants N443Q, C46R, T367M, R417H and the receptor MFSD2A, whereas N118S was associated with more receptors. We also sequenced the coding sequence of syncytin-2 in 125 severe pre-eclamptic patients and 272 normal pregnant Chinese women. Surprisingly, only 1 non-synonymous SNP T522M was found and the frequencies of heterozygous carriers were not significantly different. Taken together, our results suggest that N-glycans at residues 133, 312, 332 and 443 of syncytin-2 are required for optimal fusion induction, and that SNPs C46R, N118S, T367M, R417H, V483I and T522M can alter the fusogenic function of syncytin-2.     

三峡濒危植物疏花水柏枝的回归引种和种群重建

疏花水柏枝分布于三峡库区原海拔70～155m的消落带,三峡工程修建后它将丧失其全部生境而成为濒危植物。实验结果显示其种子在土壤含水量大于10%以上时开始萌发,以土壤含水量达到饱和状况时萌发最好。种子萌发与定居阶段对土壤水分条件的严格要求使得疏花水柏枝分布区十分狭小。回归引种和种群重建是拯救该物种的主要手段。三峡工程修建后库区内新的消落带将形成夏旱冬淹的水节律,完全不同于库区原有消落带所具有的冬旱夏淹的水节律,不适于作为疏花水柏枝种群的迁移地。相比之下库区淹没区以上各支流消落带的生态环境与疏花水柏枝原有生境较为接近,适于作其新的生境。种群遗传多样性、年龄结构、分布格局、繁殖与扩展等生物学特性是种群持续发展的基础,文章以此为依据,对疏花水柏枝种群重建与管理中的相关问题进行了分析讨论。认为疏花水柏枝种群恢复与重建中目前所面临的主要问题是如何增强被隔离的种群间的基因交流、促进种群的种子扩散与萌发、协调新建种群与当地物种的关系、营造有利于新建种群定居与生长的生态环境。重建种群的管理应结合疏花水柏枝的生长发育节律和移栽地的生态环境条件来开展,要有效地监控种群的生长发育动态,合理地在隔离种群间相互引种,适时地进行水分管理,并对周围植被适度控制。     

嗜热子囊菌Thermoascus crustaceus JCM12803来源的低温α-淀粉酶功能验证及其适冷机制分析

【目的】挖掘新颖的低温α-淀粉酶基因资源,并对其适冷机制进行分析,可以加深我们对低温酶的认识并为酶分子改良提供科学依据。【方法】根据嗜热子囊菌(Thermoascus crustaceus) JCM12803全基因组序列信息,利用PCR的方法获得一个α-淀粉酶基因Tcamy,将其插入至表达载体pPIC9后,在巴斯德毕赤酵母(Pichia pastoris) GS115中异源表达,测定其酶学性质。同时采用氨基酸序列分析和同源建模的方法获得其三维结构,分别从蛋白序列-结构-功能层面上研究其适冷机制。【结果】Tc Amy是一个典型的低温α-淀粉酶,最适温度35°C,在0°C下保持有27%的活性。序列和结构分析表明该酶N-糖基化修饰程度低,Arg和Pro含量低而Gly含量高且二硫键和离子键较少。【结论】本研究获得了一个低温α-淀粉酶,低N-糖基化以及特殊的氨基酸组成和蛋白分子内作用力是其适应低温的根本原因。