A High-Density SNP Genotyping Array for Rice Biology and Molecular Breeding

A high-density single nucleotide polymorphism （SNP） array is critically important for geneticists and molecu- lar breeders. With the accumulation of huge amounts of genomic re-sequencing data and available technologies for accurate SNP detection, it is possible to design high-density and high-quality rice SNP arrays. Here we report the devel- opment of a high-density rice SNP array and its utility. SNP probes were designed by screening more than 10 000 000 SNP loci extracted from the re-sequencing data of 801 rice varieties and an array named RiceSNP50 was produced on the Illumina Infinium platform. The array contained 51 478 evenly distributed markers, 68% of which were within genic regions. Several hundred rice plants with parent/F1 relationships were used to generate a high-quality cluster file for accurate SNP calling. Application tests showed that this array had high genotyping accuracy, and could be used for dif- ferent objectives. For example, a core collection of elite rice varieties was clustered with fine resolution. Genome-wide association studies （GWAS） analysis correctly identified a characterized QTL. Further, this array was successfully used for variety verification and trait introgression. As an accurate high-throughput genotyping tool, RiceSNP50 will play an important role in both functional genomics studies and molecular breeding.     

A novel mitovirus from Buergenerula spartinae infecting the invasive species Spartina alterniflora

Spartina alterniflora,a coastal saltmarsh plant,has been classified as one of sixteen invasive alien species by the State Environmental Protection Administration of China.Nearly forty years of propagation and intru-sion of this plant has resulted in some harmful effects on the economic development of coastal areas,due to its proliferation.     

Cloning and Characterisation of Two H+ Translocating Organic Pyrophos-phatase Genes in Salix and Their Expression Differences in Two Willow Varieties with Different Salt Tolerances

Willows are one of the most important tree species for landscaping, biofuel and raw timber. Screening salt-tolerant willow varieties is an effective approach to balance wood supply and demand. However, more salt-tolerant willow varieties are required and little is known regarding the mechanism of salt tolerance at the gene expression level. In this paper, two willow varieties were studies in terms of their differences in salt-tolerances and mechanism of salt tolerance at the level of VP1 gene expression. The results showed that Salix L0911 (L0911) had higher biomass than Salix matsudana (SM), and salt injuries were less severe in L0911 than in SM. The activities of peroxidase and superoxide dismutase, as well as the contents of soluble protein and proline, were higher in L0911 than in SM, whereas the contents of Na⁺ and K⁺, as well as the Na⁺/K⁺ ratio, were lower in L0911 than in SM. Two VP1 genes (VP1.1 and VP1.2) cloned in L0911 and SM had similar sequences and structures. VP1.1 and VP1.2 belonged to different subgroups. Total expression levels of the VP1.1 gene in both roots and leaves of L0911 were higher than that in SM under normal conditions. Under salt stress, expression of VP1 in SM roots initially increased and then decreased, whereas the expression of VP1 in leaves of L0911 and SM, as well as in roots of L0911, decreased with increasing salt concentrations. This study increased our understanding of the salt-tolerance mechanism of willow and may facilitate the selection of salt-tolerant willow resources.     

Fluoride and Arsenic Exposure Impairs Learning and Memory and Decreases mGluR5 Expression in the Hippocampus and Cortex in Rats

Fluoride and arsenic are two common inorganic contaminants in drinking water that are associated with impairment in child development and retarded intelligence. The present study was conducted to explore the effects on spatial learning, memory, glutamate levels, and group I metabotropic glutamate receptors (mGluRs) expression in the hippocampus and cortex after subchronic exposure to fluoride, arsenic, and a fluoride and arsenic combination in rats. Weaned male Sprague-Dawley rats were assigned to four groups. The control rats drank tap water. Rats in the three exposure groups drank water with sodium fluoride (120 mg/L), sodium arsenite (70 mg/L), and a sodium fluoride (120 mg/L) and sodium arsenite (70 mg/L) combination for 3 months. Spatial learning and memory was measured in Morris water maze. mGluR1 and mGluR5 mRNA and protein expression in the hippocampus and cortex was detected using RT-PCR and Western blot, respectively. Compared with controls, learning and memory ability declined in rats that were exposed to fluoride and arsenic both alone and combined. Combined fluoride and arsenic exposure did not have a more pronounced effect on spatial learning and memory compared with arsenic and fluoride exposure alone. Compared with controls, glutamate levels decreased in the hippocampus and cortex of rats exposed to fluoride and combined fluoride and arsenic, and in cortex of arsenic-exposed rats. mGluR5 mRNA and protein expressions in the hippocampus and mGluR5 protein expression in the cortex decreased in rats exposed to arsenic alone. Interestingly, compared with fluoride and arsenic exposure alone, fluoride and arsenic combination decreased mGluR5 mRNA expression in the cortex and protein expression in the hippocampus, suggesting a synergistic effect of fluoride and arsenic. These data indicate that fluoride and arsenic, either alone or combined, can decrease learning and memory ability in rats. The mechanism may be associated with changes of glutamate level and mGluR5 expression in cortex and hippocampus.     

资源型城市土地利用转型及其对生境质量的影响——以乌海市为例

资源型城市前期发展导致了生境丧失或退化,实现高质量转型需要深入理解城市转型与生态环境质量之间的关系,土地利用转型特征及其对生境质量的影响规律研究为此提供依据与支撑。以资源型城市--乌海市为研究区,通过地学信息图谱和InVEST模型探究2005-2018年乌海市土地利用转型特征、生境质量时空变化及土地利用转型对生境质量的影响。结果表明：（1）2005-2018年乌海市土地利用变化趋势发生改变,土地利用转型明显,土地利用变化图谱单元数量逐渐增加78.14%,分布范围逐渐广泛。主要表现为草地与建设用地、采矿用地之间的相互转化,第一阶段（2005-2015年）草地大面积减少,建设用地和采矿用地大面积增加,第二阶段（2015-2018年）趋势相反。（2）乌海市生境质量变化呈现先强退化后弱提升趋势。2005-2015年乌海市18.75%的区域生境质量退化,提升面积较小;2015-2018年生境质量提升面积略大于退化面积。（3）2005-2015年草地向采矿用地、建设用地转化是区域生境质量降低的主要原因,2015-2018年区域生境质量提升的主导因素是采矿用地和建设用地向草地转化。研究结果揭示了资源型城市土地利用转型过程中生境质量的响应规律,可为资源型城市土地利用转型决策提供参考。     

长白山苔原带凋落物生态化学计量特征及其对模拟氮沉降的响应

长白山苔原是我国乃至欧亚大陆东部独有的高山苔原,根据前人调查植被以灌木苔原为主要类型。在全球变暖背景下,近30年来,长白山岳桦林下的草本植物侵入苔原带,原生灌木苔原分化为灌木苔原、灌草苔原和草本苔原,形成了灌木、灌草混合和草本3种不同类型的凋落物,凋落物数量和质量发生显著改变。与此同时长白山苔原氮沉降量也在逐年增加,导致了土壤中氮的累积,势必影响凋落物的分解。凋落物作为连接植物和土壤的纽带,其分解过程中碳（C）、氮（N）、磷（P）等化学组分和化学计量比的变化直接和间接影响着土壤养分有效性和植物养分利用策略。为揭示氮沉降增加对长白山苔原带不同类型凋落物化学组分及生态化学计量特征早期变化的影响,开展了为期8个月的模拟氮沉降室内凋落物分解实验。在苔原带采集灌木优势种牛皮杜鹃和草本优势种小叶章的凋落物带回实验室,模拟灌木牛皮杜鹃群落、灌草混合的牛皮杜鹃-小叶章群落和草本小叶章群落的3种不同类型凋落物,设置三个施氮处理：对照（CK,0 g N m^-2 a^-1）、低氮（LN,10 g N m^-2 a^-1）、高氮（HN,20 g N m^-2 a^-1）。研究表明：（1）不施氮处理时,3种凋落物的C、P均呈释放状态,木质素（Li）呈先累积再略有降解趋势;牛皮杜鹃凋落物的N元素富集而其余两种凋落物N元素呈释放状态;灌草混合和草本凋落物比原生的灌木凋落物C和N元素释放快、Li累积少;而灌木凋落物的P释放略快于灌草和草本凋落物。3种植被类型凋落物的C/N、C/P、Li/N大小表现为：牛皮杜鹃凋落物>牛皮杜鹃-小叶章混生群落凋落物>小叶章凋落物;N/P表现为：小叶章凋落物>牛皮杜鹃凋落物>牛皮杜鹃-小叶章混生群落凋落物。（2）氮沉降促进3种类型凋落物分解过程中C、N和P化学组分的释放,且氮浓度越高促进作用越显著。在牛皮杜鹃凋落物分解过程中,氮素添加到达某一阈值后,其C/N、C/P、N/P、Li/N的降幅最大,后续若再增加氮素,其对化学计量比的影响均会减弱;本实验中的氮素添加量增加促进了小叶章凋落物的C/N、Li/N下降。（3）草本植物入侵引起凋落物类型的变化带来凋落物分解加快,将导致长白山苔原带养分循环的变化;氮沉降增加对小叶章凋落物化学组分的释放及C/N、Li/N的下降更为促进,小叶章凋落物内难分解化合物减少,分解受到促进。高氮沉降加快了小叶章凋落物与土壤、草本植物之间的养分循环。因此,随着未来苔原带氮沉降量的增加,将更有利于小叶章在与牛皮杜鹃的竞争中获胜,使苔原带呈现草甸化趋势。