Phytoplankton uptake of ammonium and urea during growth on oxidized forms of nitrogen

Uptake capabilities for ammonium (NH₄⁺) and urea by diatoms(Thalassiosira pseudonana and Skeletonema costatum) growingon oxidized forms of nitrogen were studied in short-term uptakeexperiments. Even when nutrient-saturated, an enhanced uptakecapability not coupled with the growth rate was present forNH₄⁺ and urea. No such enhanced uptake ability was seen forNO₂^– or NO₃^– under either nutrient-saturated ornutrient-depleted conditions. The presence of NH₄⁺ decreasedthe enhanced ability to take up urea, but the urea uptake ratein 5 min incubations remained greater than the growth rate evenwhen NH₄⁺ was present.     

Yellow water in La Jolla Bay,California, July 1980. I. A bloom of the dinoflagellate, Gymnodinium flavum Kofoid & Swezy

During the latter half of July, 1980, a bloom of Gymnodinium flavum Kofoid & Swezy caused water discoloration in La Jolla Bay, California. This naked dinoflagellate dominated the phytoplankton, numeri- cally and by volume, and was found in concentrations as high as 6.15 × 10³ cells · ml^?1. It was most abundant near the surface above a shallow (5–10 m), sharp thermocline and a nitracline at 10 m. Near the end of July, the depth of maximum phytoplankton abundance descended and water discoloration was no longer visible at the surface even though areal concentrations of G. flavum did not decrease. Concurrent with changes in the vertical distribution of the phytoplankton, warm, nutrient-depleted water moved into the area and nitrate availability in the upper 20 m of the water column was drastically reduced. Measure- ments of the chemical composition of the phytoplankton do not, however, indicate progressive nutrient stress during the period of environmental change. We conclude that shoaling of the thermocline and nitracline associated with apparent upwelling were conducive to development of the bloom and that advection of warmer water from offshore led to disappearance of yellow surface water from the bay.     

Direct Determination of Nitrification in Marine Waters by Using the Short-Lived Radioisotope of Nitrogen, 13N

Biological oxidation of radiolabeled ¹³NH₄⁺ (half-life = 10 min) was observed within minutes in assays of an estuarine ammonium oxidizer and in natural populations of nitrifiers in coastal waters. Our estimates of turnover of the ammonium pool and rates of nitrification based on experiments using ¹³N are consistent with previous values in the literature based on longer-term ¹⁵N tracer experiments or on indirect methods and thus provide corroboration for the estimates by other researchers.     

Mg2+ enhances voltage sensor/gate coupling in BK channels

BK (Slo1) potassium channels are activated by millimolar intracellular Mg(2+) as well as micromolar Ca(2+) and membrane depolarization. Mg(2+) and Ca(2+) act in an approximately additive manner at different binding sites to shift the conductance-voltage (G(K)-V) relation, suggesting that these ligands might work through functionally similar but independent mechanisms. However, we find that the mechanism of Mg(2+) action is highly dependent on voltage sensor activation and therefore differs fundamentally from that of Ca(2+). Evidence that Ca(2+) acts independently of voltage sensor activation includes an ability to increase open probability (P(O)) at extreme negative voltages where voltage sensors are in the resting state; 2 microM Ca(2+) increases P(O) more than 15-fold at -120 mV. However 10 mM Mg(2+), which has an effect on the G(K)-V relation similar to 2 microM Ca(2+), has no detectable effect on P(O) when voltage sensors are in the resting state. Gating currents are only slightly altered by Mg(2+) when channels are closed, indicating that Mg(2+) does not act merely to promote voltage sensor activation. Indeed, channel opening is facilitated in a voltage-independent manner by Mg(2+) in a mutant (R210C) whose voltage sensors are constitutively activated. Thus, 10 mM Mg(2+) increases P(O) only when voltage sensors are activated, effectively strengthening the allosteric coupling of voltage sensor activation to channel opening. Increasing Mg(2+) from 10 to 100 mM, to occupy very low affinity binding sites, has additional effects on gating that more closely resemble those of Ca(2+). The effects of Mg(2+) on steady-state activation and I(K) kinetics are discussed in terms of an allosteric gating scheme and the state-dependent interactions between Mg(2+) and voltage sensor that may underlie this mechanism.     

Intersubunit Coupling in the Pore of BK Channels

The structural basis underlying the gating of large conductance Ca²⁺-activated K⁺ (BK) channels remains elusive. We found that substitution of Leu-312 in the S6 transmembrane segment of mSlo1 BK channels with hydrophilic amino acids of smaller side-chain volume favored the open state. The sensitivities of channels to calcium and voltage were modified by some mutations and completely abolished by others. Interpretation of the results in terms of an allosteric model suggests that the calcium-insensitive mutants greatly destabilize the closed relative to the open conformation and may also disrupt the allosteric coupling between Ca²⁺ or voltage sensors and the gate. Some Phe-315 mutations also favor the open state, suggesting that Leu-312 and Phe-315 may interact in the closed state, forming a major energy barrier that the channel has to overcome to open. Homology modeling and molecular dynamic simulations further support that the side chain of Leu-312 can couple strongly with the aromatic ring of Phe-315 in neighboring subunits (L-F coupling) to maintain the channel closed. Additionally, single-channel recordings indicate that the calcium-insensitive mutants, whose kinetics can be approximately characterized by a two-state closed-open (C-O) model, exhibit nearly 100% open probability under physiological conditions without alterations in single-channel conductance. These findings provide a basis for understanding the structure and gating of the BK channel pore.High conductance, “big” K⁺ (BK)⁴ channels encoded by the Slo1 gene are widely expressed in many tissues and respond to both membrane depolarization and submembrane Ca²⁺ concentration ([Ca²⁺]_i) (1–4). Because BK channels have apparently evolved from voltage-dependent K⁺ (K_V) channels, they share many features in common with K_V channels such as a similar K⁺ selectivity filter and conserved ion conduction pore (5). On the other hand, detailed studies indicate that there are significant differences in the permeation and gating properties of K_V and BK channels. First, BK channels have the largest single-channel conductance among K⁺ channels under similar recording conditions (6), partly because of two negatively charged rings at the entrance to the intracellular vestibule of BK channels that are absent from many K_V channels (7). Second, the mouth of the BK pore on the cytoplasmic side appears to be larger than other K⁺ channels because the on-rates for channel block by quaternary ammonium (QA) ions are limited only by diffusion (8), whereas the on-rates for QA block of other K⁺ channels are substantially slower. Additionally, it has been proposed that the pore-lining S6 segment of BK channels may not act as a permeation gate (8) as in Shaker K_V channels (9). Therefore, the BK channel may have an unusual pore, and understanding the structural basis of the above differences could provide important insight into the permeation and gating properties of K⁺ channels.Despite the differences between BK and K_V channels, it is likely that the opening and closing of their pores involve similar conformational changes. Flexing of the inner S6 helix at or near a conserved glycine residue is thought to open the pore, whereas straightening closes it (10, 11). The inner helix of BK channels is potentially more flexible than that of K_V channels because it contains a twin glycine motif (Gly-310–Gly-311). Differences in permeation property, pore geometry, and gating could potentially be accounted for by differences in S6 flexibility as well as the specific side-chain properties and interactions that occur between pore-lining residues. In this study we focused on Leu-312 and Phe-315 because we inferred from sequence analogy with KcsA channels (12) and our previous studies of BK channels (13, 14) that they are two of the five pore-lining residues (the others being Leu-309, Val-319, and Ile-323), and they are near the putative gating hinge. Our results indicate that substitutions of Leu-312 or Phe-315 have profound effects on BK channel gating, consistent with the notion that these residues interact between different subunits to hold the channel closed. The interaction of these residues may also be important for coordinating conformational changes in different subunits to ensure the efficient and cooperative long-range coupling between channel subunits, which is probably a general property of allosterically regulated proteins. Moreover, a surprising loss of Ca²⁺- and voltage sensitivity that accompanies mutations of Leu-312 or Phe-315 raises the possibility that these residues play a broader role in allosteric communication between sensors and gates.     

静磁场对单株人体体表正常菌生长影响的研究

本文通过40mT和120mT两种静磁场作用下表皮葡萄球菌生长过程的研究,发现试验所选强度静磁场加速了表皮葡萄球菌在对数生长期的生长速率,而在进入稳定生长期后其生长速率反而低于对照组,但就整个生长周期而言,静磁场作用下表皮葡萄球菌的总量大于对照组,表明了试验所选静磁场对表皮葡萄球菌生长有一定促进作用.