Breeding and management of the common trumpeter (Psophia crepitans)

The breeding biology and management of three wild-caught adult Common trumpeters (one male and two females) was documented at the Woodland Park Zoological Gardens, Seattle, from April, 1984 to August, 1986. A total of 27 eggs were laid, and eight young survived to fledging. Both sexes exhibited crane-like dances during courtship, but the male appeared to perform these behaviors more frequently and with greater intensity than the females. Courtship feeding and allo-preening also occurred. Nests consisted of simple scrapes on the ground, but the birds had no opportunity to rest in trees or other elevated sites. Clutches contained two or three eggs, and the incubation period was aproximately 28 days. Although the breeding pair was generally aggressive toward the second female, all three adults participated in incubation and in caring for the young. Parental behavior consisted of brooding, allopreening, and feeding. The male preened and fed one chick significantly more often than either of the females. Trumpeter chicks were highly precocial, but grew relatively slowly, reaching 50% of adult weight by 45 to 50 days of age. Trumpeters are difficult to maintain and breed in captivity and appear to be susceptible to mycotic diseases, such as aspergillosis. Changes in the social composition of captive groups may result in improved breeding.     

Age dependent changes of a biochemical rhythm--the glycolytic oscillator of the blowfly Phormia terraenovae

1. By monitoring changes of fluorescence of NADH the frequencies, amplitudes and maximum slopes of the glycolytic oscillator of Phormia were analyzed in 5, 9, 15 and 21-day-old male flies. 2. In order to evaluate the possible existence of circadian rhythms within the oscillatory system, all determinations were repeated eight times/day. 3. In addition, the activities of three key enzymes of glycolysis, PFK, GAPDH and PK, which are central to the glycolytic oscillator were measured with respect to age and day time. 4. With increasing age the amplitudes of oscillations increased together with the maximum slopes of the oscillatory waves. The frequency appeared to be independent of age. 5. Variations of enzyme activities over the day indicated an age dependent circadian rhythm which, due to the simultaneous activity changes of the three measured enzymes, was not reflected in the whole oscillatory system. 6. The results suggest that modifications in the allosteric regulation of enzymes are responsible for the age dependent changes of the glycolytic oscillator.     

A novel approach to measuring heat flux in swimming animals

We present a design for long-term or removable attachment of heat flux sensors (HFSs) to stationary or swimming animals in water that enables collection of heat flux data on both captive and free-ranging pinnipeds. HFSs were modified to allow for independent, continuous, and long-term or removable attachment to study animals. The design was tested for effects of HFSs and the attachment mechanism on resultant heat flux. Effects were insulative and consistent across water temperatures and flow speeds, resulting in a correction factor of 3.42. This correction factor was applied to all measurements of heat flux from animal experiments to account for the thermal resistance of HFSs and insulative effects of the attachment mechanism. Heat flux and skin temperature data were collected from two captive Steller sea lions (Eumetopias jubatus) as they swam in a large habitat tank over time periods ranging from approximately 4 to 9 min. Of the 72 HFSs deployed using the attachment mechanism, data were successfully retrieved from 70. The HFS attachment mechanism was also used on two wild free-ranging Weddell seals (Leptonychotes weddellii) off Ross Island, Antarctica, for up to 7 days. Heat flux data were retrieved from all eight sensors deployed. These results, along with those from Steller sea lions, suggest that HFSs can be deployed with success on captive and wild animals using the designed attachment mechanism.     

Parts per million mass accuracy on an Orbitrap mass spectrometer via lock mass injection into a C-trap

Mass accuracy is a key parameter of mass spectrometric performance. TOF instruments can reach low parts per million, and FT-ICR instruments are capable of even greater accuracy provided ion numbers are well controlled. Here we demonstrate sub-ppm mass accuracy on a linear ion trap coupled via a radio frequency-only storage trap (C-trap) to the orbitrap mass spectrometer (LTQ Orbitrap). Prior to acquisition of a spectrum, a background ion originating from ambient air is first transferred to the C-trap. Ions forming the MS or MS(n) spectrum are then added to this species, and all ions are injected into the orbitrap for analysis. Real time recalibration on the "lock mass" by corrections of mass shift removes mass error associated with calibration of the mass scale. The remaining mass error is mainly due to imperfect peaks caused by weak signals and is addressed by averaging the mass measurement over the LC peak, weighted by signal intensity. For peptide database searches in proteomics, we introduce a variable mass tolerance and achieve average absolute mass deviations of 0.48 ppm (standard deviation 0.38 ppm) and maximal deviations of less than 2 ppm. For tandem mass spectra we demonstrate similarly high mass accuracy and discuss its impact on database searching. High and routine mass accuracy in a compact instrument will dramatically improve certainty of peptide and small molecule identification.     

A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed

Since its introduction a few years ago, the linear ion trap Orbitrap (LTQ Orbitrap) instrument has become a powerful tool in proteomics research. For high resolution mass spectrometry measurements ions are accumulated in the linear ion trap and passed on to the Orbitrap analyzer. Simultaneously with acquisition of this signal, the major peaks are isolated in turn, fragmented and recorded at high sensitivity in the linear ion trap, combining the strengths of both mass analyzer technologies. Here we describe a next generation LTQ Orbitrap system termed Velos, with significantly increased sensitivity and scan speed. This is achieved by a vacuum interface using a stacked ring radio frequency ion guide with 10-fold higher transfer efficiency in MS/MS mode and 3–5-fold in full scan spectra, by a dual pressure ion trap configuration, and by reduction of overhead times between scans. The first ion trap efficiently captures and fragments ions at relatively high pressure whereas the second ion trap realizes extremely fast scan speeds at reduced pressure. Ion injection times for MS/MS are predicted from full scans instead of performing automatic gain control scans. Together these improvements routinely enable acquisition of up to ten fragmentation spectra per second. Furthermore, an improved higher-energy collisional dissociation cell with increased ion extraction capabilities was implemented. Higher-collision energy dissociation with high mass accuracy Orbitrap readout is as sensitive as ion trap MS/MS scans in the previous generation of the instrument.Proteomics experiments typically involve the analysis of peptide mixtures obtained by the enzymatic digestion of proteomes that can be as complex as complete cell lysates (1, 2). Dynamic range of peptide abundances and the sheer number of peptides encountered in these mixtures require extremely sensitive and fast peptide detection and fragmentation (3). Although a first comprehensively identified and quantified proteome has recently been reported (4), further gains in instrumental performance are clearly needed to reduce overall measurement time, improve sequence coverage of identified proteins, and for the in-depth analysis of mammalian proteomes.Among many different instrumental formats (5), the combination of a linear ion trap (6) with a Fourier transform (FT)1 mass spectrometer has rapidly become a popular technological platform in proteomics because it combines the sensitivity, speed, and robustness of ion traps with the high resolution capabilities of FT instruments. The first implementation of this principle used an ion cyclotron resonance instrument with a 7T magnet as the high resolution device (7). Later, the Orbitrap^TM analyzer developed by Makarov was coupled to the LTQ, combining the linear ion trap with a very small and powerful analyzer (8–11).Here we describe a next generation linear ion trap-Orbitrap instrument with significant improvements in ion source transmission and with a new ion trap configuration. We show that this instrument, termed the LTQ Orbitrap Velos, is capable of much higher scan speeds compared with the current LTQ Orbitrap. Furthermore, we implemented more efficient ion extraction for the higher-energy collisional dissociation (HCD) cell (12). Due to this improvement and the 10-fold higher transmission of ions from atmosphere, high resolution and high mass accuracy MS/MS can now routinely be obtained at very high sensitivity and at scan speeds of up to 5 Hz acquisition rates. A related instrument, the LTQ-Velos, which does not contain the Orbitrap analyzer for high resolution measurements, has been described very recently (13).     

Beneath the surface: Profiling blubber depth in pinnipeds with infrared imaging

Infrared thermography (IRT) was assessed as a non-invasive tool to evaluate body condition in juvenile female harbor seals (Phoca vitulina), (n=6) and adult female Steller sea lions (Eumetopias jubatus), (n=2). Surface temperature determined by IRT and blubber depth assessed with portable imaging ultrasound were monitored concurrently at eight body sites over the course of a year in long-term captive individuals under controlled conditions. Site-specific differences in surface temperature were noted between winter and summer in both species. Overall, surface temperature was slightly higher and more variable in harbor seals (9.8±0.6 °C) than Steller sea lions (9.1±0.5 °C). Limited site-specific relationships were found between surface temperature and blubber thickness, however, insulation level alone explained a very small portion of the variance. Therefore, while validated IRT data collection can potentially provide valuable information on the health, condition and metabolic state of an animal, it cannot provide a generalized proxy for blubber depth.     

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer

Mass spectrometry-based proteomics has greatly benefitted from enormous advances in high resolution instrumentation in recent years. In particular, the combination of a linear ion trap with the Orbitrap analyzer has proven to be a popular instrument configuration. Complementing this hybrid trap-trap instrument, as well as the standalone Orbitrap analyzer termed Exactive, we here present coupling of a quadrupole mass filter to an Orbitrap analyzer. This "Q Exactive" instrument features high ion currents because of an S-lens, and fast high-energy collision-induced dissociation peptide fragmentation because of parallel filling and detection modes. The image current from the detector is processed by an "enhanced Fourier Transformation" algorithm, doubling mass spectrometric resolution. Together with almost instantaneous isolation and fragmentation, the instrument achieves overall cycle times of 1 s for a top 10 higher energy collisional dissociation method. More than 2500 proteins can be identified in standard 90-min gradients of tryptic digests of mammalian cell lysate- a significant improvement over previous Orbitrap mass spectrometers. Furthermore, the quadrupole Orbitrap analyzer combination enables multiplexed operation at the MS and tandem MS levels. This is demonstrated in a multiplexed single ion monitoring mode, in which the quadrupole rapidly switches among different narrow mass ranges that are analyzed in a single composite MS spectrum. Similarly, the quadrupole allows fragmentation of different precursor masses in rapid succession, followed by joint analysis of the higher energy collisional dissociation fragment ions in the Orbitrap analyzer. High performance in a robust benchtop format together with the ability to perform complex multiplexed scan modes make the Q Exactive an exciting new instrument for the proteomics and general analytical communities.     

Aerobic dive limit does not decline in an aging pinniped

Apneustic hunters such as diving mammals exploit body oxygen stores while submerged; therefore, any decline in oxygen handling at advanced life stages could critically impair foraging ability. We calculated the aerobic dive limit (cADL = 17.9 ± 4.4 min SD) from blood and muscle oxygen stores and published metabolic rates of Weddell seals within (9-16 years, n = 24) and beyond peak-reproductive age (17-27 years, n = 26), to investigate (1) senescent constraints in apneustic hunting, and (2) whether mass or age primarily determines oxygen stores and ADL in older seals. We compared cADL with behavioral ADL from 5,275 free-ranging dives (bADL = 24.0 ± 5.3 min, n = 18 females). We observed no changes in Weddell seal oxygen stores, its determinants, or in ADLs late in life. Oxygen stores were better predicted by mass than age, consistent with published findings for young adults. Hematological panels (n = 6) were consistent across mass and age, though hematocrit (females > males, 6% elevation) and mean corpuscular hemoglobin content (females < males, 8% reduction) varied by sex. Whole blood viscosity was decreased with increasing mass in females and was higher than in males overall (+18%). This was largely due to elevated hematocrit in females, although plasma viscosity also varied under some conditions. Females had higher blood volume and elevated blood oxygen stores (vol% body mass), which did not translate into significantly higher cADL (18.1 vs. 17.1 min for males). Neither cADL nor bADL were mass- or age-dependent.