Last exit before the brink: Conservation genomics of the Cambodian population of the critically endangered southern river terrapin

The southern river terrapin, Batagur affinis is one of the world's 25 most endangered freshwater turtle species. The major portion of the global population is currently found in peninsular Malaysia, with the only remnant Indochinese population in southern Cambodia. For more than a decade, wild nests in this remnant Cambodian population have been fenced and hatchlings reared in captivity. Here we amplified 10 microsatellite markers from all 136 captive individuals, obtained 2,658 presumably unlinked and neutral single nucleotide polymorphisms from 72 samples with ddRAD‐seq, and amplified 784 bp of mtDNA from 50 samples. Our results reveal that the last Indochinese population comprised only four kinship groups as of 2012, with all offspring sired from <10 individuals in the wild. We demonstrate an obvious decrease in genetic contributions of breeders in the wild from 2006–2012 and identify high‐value breeders instrumental for ex‐situ management of the contemporary genetic stock of the species.     

Ophthalmodynamometry for ICP prediction and pilot test on Mt. Everest

Background  

A recent development in non-invasive techniques to predict intracranial pressure (ICP) termed venous ophthalmodynamometry (vODM) has made measurements in absolute units possible. However, there has been little progress to show utility in the clinic or field. One important application would be to predict changes in actual ICP during adaptive responses to physiologic stress such as hypoxia. A causal relationship between raised intracranial pressure and acute mountain sickness (AMS) is suspected. Several MRI studies report that modest physiologic increases in cerebral volume, from swelling, normally accompany subacute ascent to simulated high altitudes.     

Observations of hypomelanosis in the nurse shark Ginglymostoma cirratum

Hypomelanosis refers to a suite of skin pigment abnormalities, including albinism, leucism and piebaldism. While documented across many vertebrate species, examples of hypomelanosis are rarely seen in chondrichthyans, with little insight into the potential effects on survival. Here, we report the first observation of abnormal skin pigmentation indicative of piebaldism in the Atlantic nurse shark Ginglymostoma cirratum, representing only the second reported case of skin aberrations for this species. This extremely rare observation is discussed in the broader context of fitness variation and long-term survival.     

Spatial variance of mobile aquatic organisms: capelin and cod in Newfoundland coastal waters

Spatial variance in the distribution of aquatic mobile organisms differs from that of passive tracers such as phytoplankton or water temperature. On average, spatial variance of phytoplankton scales with sample unit as $L^2$ or equivalently with frequency as $f^{-2}$. Limited evidence suggests that spatial variance in the distribution of mobile organisms is concentrated at relatively small scales, with little increase over larger scales: spatial variance scales as $f^{-1}$ or less. We investigated whether spatial variance in distributions of a mobile predator, Atlantic cod (Gadus morhua), and a schooling prey, capelin (Mallotus villosus), also scale with frequency as $f^{-1}$. Acoustic surveys showed that at short time scales spatial variance in cod and capelin densities, as measured by spectral density, peaked at various scales ranging from 20 m to 10 km. At longer time scales, spatial variance of cod scaled as $f^{-1.08}$ at resolutions finer than 90 m, while scaling as $f^{-0.18}$ at coarser scales. Spatial variance of capelin scaled as $f^{-1.1}$ at resolutions finer than 400 m, while scaling as $f^{-0.21}$ at coarser scales. Spatial variance plots of krill and marine birds showed similar transitions from shallow to steep scaling. Shoaling, schooling and the aggregative response by predators to concentrations of prey were three processes hypothesized to influence spatial variance in distributions of mobile organisms. Numerical experiments showed that shoaling injects variance at large to intermediate scales, resulting in scalings flatter than $f^{-1}$. Additional experiments showed that schooling produces a transition from shallow to steep scaling as frequency increases. Spatial variance patterns in cod density were not due to aggregative responses by the predator to concentrations of capelin: there was no association, on average, at resolution scales from 20 m to 10 km. Exponent values for aquatic or terrestrial mobile organisms are predicted to be approximately two at the scale of an individual organism, 0.2 at scales that contain aggregations, and two at scales larger than that of populations. These findings suggest that relations between mobile organisms and large scale habitat variables will be difficult to detect, that stratified survey designs used to estimate commercial population sizes will be inefficient, and that rates of interaction between predator and prey will be underestimated if local observations are averaged over the spatial scale of the population.