Construction of a Helicobacter pylori-Escherichia coli shuttle vector for gene transfer in Helicobacter pylori.

In this study, a Helicobacter pylori-Escherichia coli shuttle vector was constructed for transferring DNA into H. pylori. The smallest cryptic plasmid (1.2 kb), pHP489, among those harbored by 77 H. pylori isolates was selected as a base replicon for constructing vectors. HindIII-digested pHP489 was ligated with a kanamycin resistance gene [aph(3')-III], which originated from Campylobacter jejuni, to produce the recombinant plasmid pHP489K. pHP489K was efficiently transformed into and stably maintained in H. pylori strains. The shuttle vector pBHP489K (3.6 kb) was constructed by the recombination of pHP489, ColE1, and aph(3')-III sequences. pBHP489K was reciprocally transformed into and maintained in both H. pylori and E. coli. Introduction of the shuttle vector clone DNA (pBHP489K/AB; 6.7 kb), containing the ureA and ureB genes of H. pylori, into urease-negative mutants of H. pylori led to the restoration of their urease activity. The transformants were confirmed to contain the incoming plasmid DNA. pBHP489K satisfied the requirements for an H. pylori-E. coli shuttle vector, implying that it might be a useful vector for investigating pathogenicity and restriction-modification systems of H. pylori.     

Effects of methyl jasmonate (MeJA) on the dark-induced senescence in oat (Avena sativa L.) leaf segments

To investigate the relationship between methyl jasmonate (MeJA) and ethylene in leaf senescence, we studied the effects of MeJA on ethylene production and ethylene biosynthetic enzyme activities in oat(Avena sativa L.) leaf segments incubated in darkness. MeJA promoted dark-induced senescence judged from the contents of chlorophyll and protein, and increased ethylene production 6 times of the control. MeJA also increased the activities of ethylene biosynthetic enzymes, 1-aminocyclopropane carboxylic acid (ACC) synthase and ACC oxidase as compared to control. In MeJA-treated leaf segments, ACC synthase activity reached its maximum level at 24 h of incubation and ACC oxidase activity peaked at 6 h of incubation. Aminoethoxyvinylglycine (AVG) and Co²⁺, inhibitors of ACC synthase and ACC oxidase respectively, reduced MeJA-induced ethylene production. They also delayed leaf senescence that was promoted by the treatment of MeJA. From these results, we can suggest that MeJA increased the activities of ACC synthase and ACC oxidase, these increased activities lead to increase in ethylene production and this increased ethylene production might promote dark-induced leaf senescence.     

Effects of medium components on L-ornithine production byBrevibacterium ketoglutamicum

Effects of yeast extract, and ammonium sulfate were investigated on the production of L-ornithine by an arginine auxotroph.Brevibacterium ketoglutamicum in flask and batch cultures. Yeast extract as an arginine source and ammonium sulfate as an inorganic nitrogen source had significant effects on L-ornithine, production and cell growth. L-ornithine production was repressed by the excessive addition of arginine. Reversion of auxotrophic cells to the wild type was observed when the initial yeast extract concentration was too low. There existed optimum concentrations of yeast extract and ammonium sulfate for L-ornithine production. The effects of yeast extract and ammonium sulfate concentrations on the Leudeking-Piret model parameters were examined to analyze, the relationship between cell growth and L-ornithine production.     

Random sequence analysis of genomic DNA of a hyperthermophile: Aquifex pyrophilus

Aquifex pyrophilus is one of the hyperthermophilic bacteria that can grow at temperatures up to 95°C. To obtain information about its genomic structure, random sequencing was performed on plasmid libraries containing 0.5–2 kb genomic DNA fragments of A. pyrophilus. Comparison of the obtained sequence tags with known proteins revealed that 123 tags showed strong similarity to previously identifed proteins in the PIR or Genebank databases. These included three proteases, two amino acid racemases, and three enzymes utilizing oxygen as substrate. Although the GC ratio of the genome is about 40%, the codon usage of A. pyrophilus showed biased occurrence of G and C at the third position of codons, especially those for amino acids such as asparagine, aspartic acid, cysteine, glutamine, glutamic acid, histidine, lysine, and tyrosine. A higher ratio of positively charged amino acids in A. pyrophilus proteins as compared with proteins from mesophiles suggested that Aquifex proteins might contain increased ion-pair interaction that could help to maintain heat stability. Received: March 1, 1997 / Accepted: May 9, 1997     

Effects of anoxic conditions on the enzymatic conversion of D,L-2-amino-thiazoline-4-carboxylic acid to L-cystine

The effects of anoxic conditions on product inhibition and the stability of L-ATC hydrolase were investigated in the conversion of D,L-2-amino-Δ²-thiazoline-4-carboxylic acid (D,L-ATC) to L-cystine using the cell free extract enzyme of Pseudomonas sp. in the presence of hydroxylamine. At L-cysteine equivalent levels, where one mole of L-cystine was counted as two moles of L-cysteine, L-cystine inhibited the L-ATC hydrolase reaction to a greater extent than L-cysteine. In air, the product occurred predominantly as L-cystine (94.9%), whereas in a nitrogen atmosphere the product occured as a mixture of L-cysteine (39.3%) and L-cystine (40.7%). As a result, less product inhibition took place in nitrogen. The activity of L-ATC hydrolase was almost fully lost after 20 h of incubation by shaking at 30 °C in air, but considerable activity remained under the anoxic conditions of nitrogen. A kinetic analysis of the reactions confirmed that reduced product inhibition and enhanced enzyme stability in nitrogen result in a more efficient enzyme reaction. The inactivation rate constant (k₁) was estimated to be 0.11 h^?1 in nitrogen and 0.22^?1 in air, indicating that the stability of L-ATC hydrolase in nitrogen was greater than in air. The values of the K_p1 and K_p2 constants related to product inhibition were 43.36 mM and 30.48 mM for L-cysteine and L-cystine, respectively, where higher values were an indication of less product inhibition. The value of the rate constant (k₂) for the oxidation of L-cysteine to L-cystine was 0.09 h^?1 in nitrogen and 1.01 h^?1 in air, suggesting that the oxidation of L-cysteine to L-cystine proceeds faster in air than in nitrogen.     

Optimization of operating variables for polyphenol extraction from lipid-extracted microalgae using acid-catalyzed hot-water extraction

Microalgae are a promising source of lipids for biodiesel production, which has the potential to replace fossil fuels without affecting the supply of foods and crop products. From the production of biodiesel, a solid waste known as lipid-extracted microalgae (LEM) is generated as a byproduct, and it is considered a rich source of antioxidant compounds, mainly polyphenols. In this study, optimization of the process variables of acid-catalyzed hot-water extraction was performed at low temperature in order to increase the production of polyphenols from LEM (Tetraselmis KCTC 12236BP). A statistically based method was used to optimize key variables, including extraction temperature, time, and sulfuric acid concentration. The results indicated that all process variables had significant effects on the extraction of polyphenols (p < 0.05). For instance, polyphenol levels increased in accordance with the increase of the three variables. The most economical optimal conditions were 100°C, 46.8 min, and 0.32 N H₂SO₄, under which polyphenol yield was 8.04 mg gallic acid equivalent (GAE)/g dry matter (DM), 5.2-fold higher than that from hot-water extraction without optimization.     

D-Galactose as an autoinducer 2 inhibitor to control the biofilm formation of periodontopathogens

Autoinducer 2 (AI-2) is a quorum sensing molecule to which bacteria respond to regulate various phenotypes, including virulence and biofilm formation. AI-2 plays an important role in the formation of a subgingival biofilm composed mostly of Gram-negative anaerobes, by which periodontitis is initiated. The aim of this study was to evaluate D-galactose as an inhibitor of AI-2 activity and thus of the biofilm formation of periodontopathogens. In a search for an AI-2 receptor of Fusobacterium nucleatum, D-galactose binding protein (Gbp, Gene ID FN1165) showed high sequence similarity with the ribose binding protein (RbsB), a known AI-2 receptor of Aggregatibacter actinomycetemcomitans. D-Galactose was evaluated for its inhibitory effect on the AI-2 activity of Vibrio harveyi BB152 and F. nucleatum, the major coaggregation bridge organism, which connects early colonizing commensals and late pathogenic colonizers in dental biofilms. The inhibitory effect of D-galactose on the biofilm formation of periodontopathogens was assessed by crystal violet staining and confocal laser scanning microscopy in the absence or presence of AI-2 and secreted molecules of F. nucleatum. D-Galactose significantly inhibited the AI-2 activity of V. harveyi and F. nucleatum. In addition, D-galactose markedly inhibited the biofilm formation of F. nucleatum, Porphyromonas gingivalis, and Tannerella forsythia induced by the AI-2 of F. nucleatum without affecting bacterial growth. Our results demonstrate that the Gbp may function as an AI-2 receptor and that galactose may be used for prevention of the biofilm formation of periodontopathogens by targeting AI-2 activity.     

Ontogeny of the Furongian (late Cambrian) trilobite Proceratopyge cf. P. Lata Whitehouse from northern Victoria Land,Antarctica, and the evolution of metamorphosis in trilobites

There were multiple origins of metamorphosis‐undergoing protaspides in trilobite evolution: within the superfamilies Remopleuridioidea, Trinucleoidea, and within the Order Asaphida. Recent studies have revealed that the protaspides of the Cambrian representatives of the Remopleuridioidea and the Trinucleoidea did not undergo metamorphosis. However, ontogeny of the Cambrian members of the Order Asaphida has remained unknown. This study documents the ontogeny of the Furongian asaphoidean ceratopygid trilobite, Proceratopyge cf. P. lata Whitehouse, from northern Victoria Land, Antarctica. Two stages for the protaspid phase, five developmental stages for the post‐protaspid cranidia, and ten stages for the post‐protaspid pygidia have been identified. Interestingly, the protaspis directly developed into a meraspis without metamorphosis. A new cladistic analysis resulted in a single most parsimonious tree, according to which the presence of the bulbous commutavi protaspis turns out to be a synapomorphy for Asaphidae + Cyclopygoidea, not a synapomorphy for the Order Asaphida as previously suggested. In addition, it is inferred that there was convergent evolution of indirectly‐developing commutavi protaspides during the Furongian and Early Ordovician. Metamorphosis‐entailing planktonic larvae evolved in many different metazoan lineages near the Cambrian–Ordovician transition, due to the escalating ecological pressure of the Great Ordovician Biodiversification Event. Since the bulbous commutavi protaspid morphology is thought to be an adaptation for a planktonic life mode, the convergent evolution of the indirect development in the three trilobite lineages at this period might have been a result of adaptation to the early phase of the Great Ordovician Biodiversification Event.