Crystal structure of agkisacucetin, a Gpib-binding snake C-type lectin that inhibits platelet adhesion and aggregation

Agkisacucetin is a snake C‐type lectin isolated from the venom of Agkistrodon acutus (A. acutus). It binds specifically to the platelet glycoprotein (GP) Ib and prevents the von Willebrand factor (VWF) accessing it. We determined the crystal structure of agkisacucetin to 1.9Å resolution. The structure of agkisacucetin has an (αβ) fold similar to another GPIb‐binding protein, flavocetin‐A, but lacks the C‐terminal cysteine in the β‐subunit, does not form (βα)₄ tetramers, and does not cluster GPIbs, like flavocetin‐A. Proteins 2012;. © 2012 Wiley Periodicals, Inc.     

菊三七属植物化学成分及药理作用的研究进展

菊科菊三七属植物中含有生物碱类、黄酮类、香豆素类、三萜类、甾体类及其皂苷、倍半萜类、酚酸类、脑苷脂类等化学成分,具有良好的止血、降血糖、降血压、抗肿瘤、抗炎、抗凝血等药理活性。可见,该属植物化学成分丰富,药理活性多样,极具药用及食用保健价值。本文就近年来菊三七属植物的化学成分和药理作用研究进展作一综述。     

海洋生态系统服务的来源与实现

从海洋生态系统的组分、生态过程及生物多样性等3个方面,分析了海洋生态系统能够产生和支持的生态系统服务。按照相似的作用和性质,海洋生态系统服务可以归纳为15种类型。尽管对海洋生态系统的许多生态过程及生物种类还不了解,但本文试图在这些服务与其来源之间建立起对应关系,以掌握这些服务的实现过程。每种生态系统服务都来源于生态系统的组分。并通过一定生态过程得以实现。所以,当海洋生态系统的组分或过程受损时,海洋生态系统服务将减弱或丧失．并因此而影响人类对这些服务的享用。理解和掌握海洋生态系统服务的来源及实现过程,不仅可以更好地认识海洋生态系统的重要性,还可以为受损生态系统修复提供科学基础,从而更好地管理和维护海洋生态系统的服务,实现社会的可持续发展。     

Structure of lpg0406, a carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response from Legionella pneumophila

Lpg0406, a hypothetical protein from Legionella pneumophila, belongs to carboxymuconolactone decarboxylase (CMD) family. We determined the crystal structure of lpg0406 both in its apo and reduced form. The structures reveal that lpg0406 forms a hexamer and have disulfide exchange properties. The protein has an all‐helical fold with a conserved thioredoxin‐like active site CXXC motif and a proton relay system similar to that of alkylhydroperoxidase from Mycobacterium tuberculosis (MtAhpD), suggesting that lpg0406 might function as an enzyme with peroxidase activity and involved in antioxidant defense. A comparison of the size and the surface topology of the putative substrate‐binding region between lpg0406 and MtAhpD indicates that the two enzymes accommodate the different substrate preferences. The structural findings will enhance understanding of the CMD family protein structure and its various functions.     

Temperature Sensitivity of Soil Organic Carbon Mineralization along an Elevation Gradient in the Wuyi Mountains,China

Soil organic carbon (SOC) actively participates in the global carbon (C) cycle. Despite much research, however, our understanding of the temperature sensitivity of soil organic carbon (SOC) mineralization is still very limited. To investigate the responses of SOC mineralization to temperature, we sampled surface soils (0–10 cm) from evergreen broad-leaf forest (EBF), coniferous forest (CF), sub-alpine dwarf forest (SDF), and alpine meadow (AM) along an elevational gradient in the Wuyi Mountains, China. The soil samples were incubated at 5, 15, 25, and 35°C with constant soil moisture for 360 days. The temperature sensitivity of SOC mineralization (Q₁₀) was calculated by comparing the time needed to mineralize the same amount of C at any two adjacent incubation temperatures. Results showed that the rates of SOC mineralization and the cumulative SOC mineralized during the entire incubation significantly increased with increasing incubation temperatures across the four sites. With the increasing extent of SOC being mineralized (increasing incubation time), the Q₁₀ values increased. Moreover, we found that both the elevational gradient and incubation temperature intervals significantly impacted Q₁₀ values. Q₁₀ values of the labile and recalcitrant organic C linearly increased with elevation. For the 5–15, 15–25, and 25–35°C intervals, surprisingly, the overall Q₁₀ values for the labile C did not decrease as the recalcitrant C did. Generally, our results suggest that subtropical forest soils may release more carbon than expected in a warmer climate.     

High-Frequency Stimulation of Nucleus Accumbens Changes in Dopaminergic Reward Circuit

Deep brain stimulation (DBS) of the nucleus accumbens (NAc) is a potential remedial therapy for drug craving and relapse, but the mechanism is poorly understood. We investigated changes in neurotransmitter levels during high frequency stimulation (HFS) of the unilateral NAc on morphine-induced rats. Sixty adult Wistar rats were randomized into five groups: the control group (administration of saline), the morphine-only group (systematic administration of morphine without electrode implantation), the morphine-sham-stimulation group (systematic administration of morphine with electrode implantation but not given stimulation), the morphine-stimulation group (systematic administration of morphine with electrode implantation and stimulation) and the saline-stimulation group (administration of saline with electrode implantation and stimulation). The stimulation electrode was stereotaxically implanted into the core of unilateral NAc and microdialysis probes were unilaterally lowered into the ipsilateral ventral tegmental area (VTA), NAc, and ventral pallidum (VP). Samples from microdialysis probes in the ipsilateral VTA, NAc, and VP were analyzed for glutamate (Glu) and γ-aminobutyric acid (GABA) by high-performance liquid chromatography (HPLC). The levels of Glu were increased in the ipsilateral NAc and VP of morphine-only group versus control group, whereas Glu levels were not significantly changed in the ipsilateral VTA. Furthermore, the levels of GABA decreased significantly in the ipsilateral NAc, VP, and VTA of morphine-only group when compared with control group. The profiles of increased Glu and reduced GABA in morphine-induced rats suggest that the presence of increased excitatory neurotransmission in these brain regions. The concentrations of the Glu significantly decreased while the levels of GABA increased in ipsilateral VTA, NAc, and VP in the morphine-stimulation group compared with the morphine-only group. No significant changes were seen in the morphine-sham stimulation group compared with the morphine-only group. These findings indicated that unilateral NAc stimulation inhibits the morphine-induced rats associated hyperactivation of excitatory neurotransmission in the mesocorticolimbic reward circuit.     

Structural basis of pre-mRNA recognition by the human cleavage factor Im complex

The cleavage factor I(m) (CF I(m)), consists of a 25 kDa subunit (CF I(m)25) and one of three larger subunits (CF I(m)59, CF I(m)68, CF I(m)72), and is an essential protein complex for pre-mRNA 3'-end cleavage and polyadenylation. It recognizes the upstream sequence of the poly(A) site in a sequence-dependent manner. Here we report the crystal structure of human CF I(m), comprising CF I(m)25 and the RNA recognition motif domain of CF I(m)68 (CF I(m)68RRM), and the crystal structure of the CF I(m)-RNA complex. These structures show that two CF I(m)68RRM molecules bind to the CF I(m)25 dimer via a novel RRM-protein interaction mode forming a heterotetramer. The RNA-bound structure shows that two UGUAA RNA sequences, with anti-parallel orientation, bind to one CF I(m)25-CF I(m)68RRM heterotetramer, providing structural basis for the mechanism by which CF I(m) binds two UGUAA elements within one molecule of pre-mRNA simultaneously. Point mutation and kinetic analyses demonstrate that CF I(m)68RRM can bind the immediately flanking upstream region of the UGUAA element, and CF I(m)68RRM binding significantly increases the RNA-binding affinity of the complex, suggesting that CF I(m)68 makes an essential contribution to pre-mRNA binding.     

土壤线虫群落对闽北森林植被恢复的响应

为了考察地上植物群落的演替与土壤线虫群落的相互关系, 作者对闽北退化常绿阔叶林不同恢复阶段的土壤线虫群落进行了为期一年的定位研究。研究表明, 线虫群落对植被不同恢复阶段有不同的响应, 各恢复阶段线虫数量差异显著(P<0.01), 从大到小依次为: 荒地(Wj)、天然阔叶林(Cc)、针阔混交林(Clc )、针叶林(Pm); 土壤线虫数量的季节波动明显, 属数与个体密度均体现为春季＞冬季＞秋季＞夏季, 而夏季极显著少于其他季节(P<0.01); 土壤线虫群落DG指数与丰富度指数从大到小依次为天然阔叶林、荒地、针阔混交林和针叶林。而多样性顺序却表现为: 荒地>天然阔叶林>针阔混交林>针叶林; 不同恢复阶段土壤根系生物量、土壤理化特征存在明显的空间变异, 并且线虫数量与根系生物量、土壤含水率、土壤孔隙度、土壤有机质、全氮以及速效磷具有显著正相关关系。因此, 植被恢复过程中土壤线虫群落结构分异及其动态是一个重要的生态响应过程, 能为进一步研究土壤生物在植被演替中的地位和作用以及土壤生物多样性保护提供基础数据。     

蚯蚓对土壤微生物残留物的影响研究评述与展望

蚯蚓如何影响土壤有机碳的固持是土壤生态学的关键科学问题之一。蚯蚓能同时促进土壤有机碳分解和稳定,这种两面作用带来的不确定性被研究者称为"蚯蚓困境"。研究证据和新兴的"土壤微生物碳泵"概念模型表明土壤微生物残留物是土壤有机质的主要贡献者。为系统了解蚯蚓对土壤微生物残留物的影响与可能的机制,研究分析和总结了已有的国内外蚯蚓与微生物残留物（氨基糖）的相关研究成果,表明：（1）过往的研究忽略了蚯蚓对微生物残留物的影响,导致这一方向的研究严重滞后;（2）蚯蚓对土壤微生物残留物影响的方向和大小仍有很大的不确定性,可供量化分析其驱动机制的研究还很缺乏。研究尝试将蚯蚓整合到"土壤微生物碳泵"概念框架中,分析蚯蚓影响土壤微生物残留物3个方面的可能机制,即：（1）改变土壤微生物量、群落结构,（2）改变微生物生理特性,（3）改变土壤团聚体结构等,影响土壤有机碳的积累。同时,本文提出了未来相关研究的6个重点方向,包括：（1）蚯蚓对微生物的选择性取食,（2）肠道介导的微生物"涨落"现象,（3）蚯蚓对矿质结合有机物的"破坏"与"重组",（4）蚯蚓引起的"激发"和"续埋"效应,（5）多生态型相互作用,（6）全球变化背景下的蚯蚓生态学等,以期为进一步揭示蚯蚓-微生物相互作用影响土壤有机碳累积与稳定性的机制提供参考。     

神经节苷脂GM1对帕金森模型小鼠黑质细胞凋亡及Bcl-2和Bax表达的影响

目的观察神经节苷脂GM1对帕金森模型小鼠黑质细胞凋亡及Bcl-2和Bax表达的影响,探讨其预防帕金森病的机制。方法成年C57-BL雄性小鼠分为正常对照组、模型组和神经节苷脂GMI治疗组。应用TUNEL法和免疫荧光组织化学染色技术观察各组小鼠黑质神经元凋亡及Bcl-2和Bax表达情况。结果TUNEL、Bcl-2和Bax阳性神经元主要位于黑质致密部。模型组黑质神经元凋亡数明显多于正常对照组,神经节苷脂GM1组黑质神经元凋亡数明显少于模型组。在模型组Bcl-2阳性神经元和Bax阳性神经元的数量均较正常对照组明显增多;在神经节苷脂GM1组Bcl-2阳性神经元的数量较模型组明显增多,但Bax阳性神经元的数量较模型组明显减少。结论神经节苷脂GM1可能通过增强黑质神经元内Bcl-2基因表达及抑制Bax基因表达的途径抑制黑质神经元的凋亡。