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941.
Mohd Zeeshan Ansari Jyoti Sharma Rajesh S Gokhale Debasisa Mohanty 《BMC bioinformatics》2008,9(1):454
Background
Secondary metabolites biosynthesized by polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) family of enzymes constitute several classes of therapeutically important natural products like erythromycin, rapamycin, cyclosporine etc. In view of their relevance for natural product based drug discovery, identification of novel secondary metabolite natural products by genome mining has been an area of active research. A number of different tailoring enzymes catalyze a variety of chemical modifications to the polyketide or nonribosomal peptide backbone of these secondary metabolites to enhance their structural diversity. Therefore, development of powerful bioinformatics methods for identification of these tailoring enzymes and assignment of their substrate specificity is crucial for deciphering novel secondary metabolites by genome mining. 相似文献942.
Characteristic features and biotechnological applications of cross-linked enzyme aggregates (CLEAs) 总被引:1,自引:0,他引:1
Sheldon RA 《Applied microbiology and biotechnology》2011,92(3):467-477
Cross-linked enzyme aggregates (CLEAs) have many economic and environmental benefits in the context of industrial biocatalysis.
They are easily prepared from crude enzyme extracts, and the costs of (often expensive) carriers are circumvented. They generally
exhibit improved storage and operational stability towards denaturation by heat, organic solvents, and autoproteolysis and
are stable towards leaching in aqueous media. Furthermore, they have high catalyst productivities (kilograms product per kilogram
biocatalyst) and are easy to recover and recycle. Yet another advantage derives from the possibility to co-immobilize two
or more enzymes to provide CLEAs that are capable of catalyzing multiple biotransformations, independently or in sequence
as catalytic cascade processes. 相似文献
943.
The production of recombinant proteins in plants is an active area of research and many different high-value proteins have
now been produced in plants. Tobacco leaves have many advantages for recombinant protein production particularly since they
allow field production without seeds, flowers or pollen and therefore provide for contained production. Despite these biosafety
advantages recombinant protein accumulation in leaves still needs to be improved. Elastin-like polypeptides are repeats of
the amino acids “VPGXG” that undergo a temperature dependant phase transition and have utility in the purification of recombinant
proteins but can also enhance the accumulation of recombinant proteins they are fused to. We have used a 11.3 kDa elastin-like
polypeptide as a fusion partner for three different target proteins, human interleukin-10, murine interleukin-4 and the native
major ampullate spidroin protein 2 gene from the spider Nephila clavipes. In both transient analyses and stable transformants the concentrations of the fusion proteins were at least an order of
magnitude higher for all of the fusion proteins when compared to the target protein alone. Therefore, fusions with a small
ELP tag can be used to significantly enhance the accumulation of a range of different recombinant proteins in plant leaves.
An erratum to this article can be found at 相似文献
944.
Factors influencing the spatial distribution of forest plant species in hedgerows of North-western Germany 总被引:2,自引:0,他引:2
In North-western Germany woodland fragmentation has caused a decline in many forest plant species. Hedgerows partly offer
a similar environment as forests and have been identified as potential habitats for forest plants in various studies from
North America and Western Europe. The objective of this study was to examine whether this applies also to Central Europe and
which variables affect the spatial distribution and abundance of forest plant species in hedgerows on a local scale. Three
hedgerow networks north of the city of Bremen, Germany, were selected as study areas and divided into totally 515 hedgerow
segments. In each segment we recorded all vascular plants and a large number of explanatory variables relating to structure,
spatial configuration, environment and management. Averaged across species there was a predominant effect of environmental
factors on the occurrence of forest species in the hedgerows, followed by spatial configuration and management. Hedgerow structure
was found to be less important. In general, forest species were favored by low nutrient and light availability as well as
high connectivity with other hedgerows or forest; they avoided hedgerows with a west-easterly orientation and an adjacent
land use in the form of fields or grasslands. Forest species found and not found in hedgerows did not differ in their environmental
preferences or life history traits. The number of threatened forest species in the hedgerows, however, was lower than expected
with respect to their overall proportion to the total number of forest species in the region. 相似文献
945.
João Marcelo Alvarenga Braga 《Kew Bulletin》2008,63(2):309-314
Summary
Calathea dryadica and Calathea reginae are described, circumscribed and illustrated. These new species are probably endemic to the Atlantic Forest of Rio de Janeiro
State in Southeast Brazil and are considered critically endangered because of the restricted geographic area of occurrence,
sometimes enclosed by densely urbanised areas. 相似文献
946.
Hongjian Wan Zhenguo Zhao Ahmed Abbas Malik Chuntao Qian Jinfeng Chen 《BMC plant biology》2010,10(1):186
Background
Due to the variation and mutation of the races of Pseudoperonospora cubensis, downy mildew has in recent years become the most devastating leaf disease of cucumber worldwide. Novel resistance to downy mildew has been identified in the wild Cucumis species, C. hystrix Chakr. After the successful hybridization between C. hystrix and cultivated cucumber (C. sativus L.), an introgression line (IL5211S) was identified as highly resistant to downy mildew. Nucleotide-binding site and leucine-rich repeat (NBS-LRR) genes are the largest class of disease resistance genes cloned from plant with highly conserved domains, which can be used to facilitate the isolation of candidate genes associated with downy mildew resistance in IL5211S. 相似文献947.
Junying Liu 《Journal of applied phycology》2016,28(1):25-33
Large improvements in biomass and lipid production are required to make massive scale algal biodiesel production an economic reality. The application of the biodiversity strategy to enhance algal biomass as biofuel feedstock is little. The algal diversity was manipulated in this study to investigate the effects of a combination of biodiversity complementarity and a new medium consisting of seawater and agricultural fertilizer on lipid productivity. The algae diverse community includes two strains of Dunaliella salina (Dunaliella salina 19/30 and 19/18) and three species of Nannochloropsis (Nannochloropsis oculata, Nannochloropsis salina, and Nannochloropsis gaditana). The results showed that the most diverse community (5 species) produced an average of sixfold more biomass in the new medium than did the standard f/2 culture medium. The most diverse polyculture had the highest growth rate (1.01 day?1), biomass (1.2 g L?1), and lipid productivity (0.31 g L?1 day?1). The assessment of algal polycultures relative to monocultures is particularly interesting and novel for this biofuel field, and the observations that these polycultures resulted in significant lipid productivity improvements are very useful addition to the biofuel research. The possible mechanism (resource diversity) to explain the synergy in mixed cultures warrants further investigation. 相似文献
948.
949.
Sher Hayat Khan Deming Zhao Syed Zahid Ali Shah Mohammad Farooque Hassan Ting Zhu Zhiqi Song Xiangmei Zhou Lifeng Yang 《Cellular and molecular neurobiology》2017,37(4):717-728
Transmissible spongiform encephalopathies (TSEs) are caused by the accumulation of the abnormal prion protein scrapie (PrPSc). Prion protein aggregation, misfolding, and cytotoxicity in the brain are the major causes of neuronal dysfunction and ultimate neurodegeneration in all TSEs. Parkin, an E3 ubiquitin ligase, has been studied extensively in all major protein misfolding aggregating diseases, especially Parkinson’s disease and Alzheimer’s disease, but the role of parkin in TSEs remains unknown. Here we investigated the role of parkin in a prion disease cell model in which neuroblastoma2a (N2a) cells were treated with prion peptide PrP106–126. We observed a gradual decrease in the soluble parkin level upon treatment with PrP106–126 in a time-dependent manner. Furthermore, endogenous parkin colocalized with FITC-tagged prion fragment106–126. Overexpression of parkin in N2a cells via transfection repressed apoptosis by enhancing autophagy. Parkin-overexpressing cells also showed reductions in apoptotic BAX translocation to the mitochondria and cytochrome c release to the cytosol, which ultimately inhibited activation of proapoptotic caspases. Taken together, our findings reveal a parkin-mediated cytoprotective mechanism against PrP106–126 toxicity, which is a novel potential therapeutic target for treating prion diseases. 相似文献
950.
Deciduous forests may respond differently from coniferous forests to the anthropogenic deposition of nitrogen (N). Since fungi,
especially ectomycorrhizal (EM) fungi, are known to be negatively affected by N deposition, the effects of N deposition on
the soil microbial community, total fungal biomass and mycelial growth of EM fungi were studied in oak-dominated deciduous
forests along a nitrogen deposition gradient in southern Sweden. In-growth mesh bags were used to estimate the production
of mycelia by EM fungi in 19 oak stands in the N deposition gradient, and the results were compared with nitrate leaching
data obtained previously. Soil samples from 154 oak forest sites were analysed regarding the content of phospholipid fatty
acids (PLFAs). Thirty PLFAs associated with microbes were analysed and the PLFA 18:2ω6,9 was used as an indicator to estimate
the total fungal biomass. Higher N deposition (20 kg N ha−1 y−1 compared with 10 kg N ha−1 y−1) tended to reduce EM mycelial growth. The total soil fungal biomass was not affected by N deposition or soil pH, while the
PLFA 16:1ω5, a biomarker for arbuscular mycorrhizal (AM) fungi, was negatively affected by N deposition, but also positively
correlated to soil pH. Other PLFAs positively affected by soil pH were, e.g., i14:0, a15:0, 16:1ω9, a17:0 and 18:1ω7, while
some were negatively affected by pH, such as i15:0, 16:1ω7t, 10Me17:0 and cy19:0. In addition, N deposition had an effect
on the PLFAs 16:1ω7c and 16:1ω9 (negatively) and cy19:0 (positively). The production of EM mycelia is probably more sensitive
to N deposition than total fungal biomass according to the fungal biomarker PLFA 18:2ω6,9. Low amounts of EM mycelia covaried
with increased nitrate leaching, suggesting that EM mycelia possibly play an important role in forest soil N retention at
increased N input. 相似文献