Nest reuse in arctic‐breeding shorebirds: an analysis of potential benefits and factors affecting the occurrence of this rare behavior

During a 13‐yr study near Utqia?vik (formerly Barrow), Alaska, we documented the prevalence of nest reuse in eight arctic‐breeding shorebirds. We evaluated whether nest reuse saved individuals time and energy, enhanced nest survival, or was related to nest density. We documented 208 (6.2%) cases of nest reuse among 3336 nesting attempts. Nest reuse occurred in all years but the first and in all species, with greatest reuse in semipalmated sandpiper (10.9%) and American golden‐plover (10.0%). While most cases of nest reuse occurred with conspecifics, many cases of heterospecific nest reuse were also observed, indicating high niche overlap in nest site preferences among species. We found that individuals reusing old nests may have benefited by nesting earlier, but nest reuse did not generally enhance nest survival. A significant positive relationship was also found between nest reuse and nest density at the community level and for four of the eight species, suggesting high inter‐ or intraspecific competition combined with limited suitable nest sites may force individuals to reuse old nests. Our observations also suggest that upland nesting species may be the most dependent on old nest sites. Preferential development of these sites may therefore have a previously unknown detrimental effect on these species, although further study is needed to better determine the impact of such habitat loss.     

Development of biotin-retinoid conjugates as chemical probes for analysis of retinoid function

Herein, we report the rational design, synthesis and biological evaluation of conjugates consisting of the synthetic retinoid Am580 and biotin connected via a linker moiety. We found that the linking substructure between the retinoid part and the biotin part is critical for retaining the biological activity. Conjugate 4 with a shorter linker showed similar potency to endogenous retinoid ATRA (1) and the parent compound Am580 (2) for neural differentiation of mouse embryotic carcinoma P19 cells, and showed the same pattern of induction of gene expression. It is expected to be useful as a probe for investigations of retinoid function. The design rationale and structure-activity relationship of the linker moiety are expected to be helpful for developing biotin conjugates of other nuclear receptor ligands.     

Community assembly of the native C. elegans microbiome is influenced by time,substrate and individual bacterial taxa

Microbiome communities are complex assemblages of bacteria. The dissection of their assembly dynamics is challenging because it requires repeated sampling of both host and source communities. We used the nematode Caenorhabditis elegans as a model to study these dynamics. We characterized microbiome variation from natural worm populations and their substrates for two consecutive years using 16S rDNA amplicon sequencing. We found conservation in microbiome composition across time at the genus, but not amplicon sequencing variant (ASV) level. Only three ASVs were consistently present across worm samples (Comamonas ASV10859, Pseudomonas ASV7162 and Cellvibrio ASV9073). ASVs were more diverse in worms from different rather than the same substrates, indicating an influence of the source community on microbiome assembly. Surprisingly, almost 50% of worm-associated ASVs were absent in corresponding substrates, potentially due to environmental filtering. Ecological network analysis revealed strong effects of bacteria–bacteria interactions on community composition: While a dominant Erwinia strain correlated with decreased alpha-diversity, predatory bacteria of the Bdellovibrio and like organisms associated with increased alpha-diversity. High alpha-diversity was further linked to high worm population growth, especially on species-poor substrates. Our results highlight that microbiomes are individually shaped and sensitive to dramatic community shifts in response to particular competitive species.     

5-Methoxy-2,2,8-trimethyl-10-senecioyl-2H,6H-benzo(1,2-b; 5,4-b')dipyran-6-one from Spathelia wrightii

From leaflets of Spathelia wrightii a new pyranochromone has been isolated, the spectroscopic properties of which are in accordance with the structure 5-methoxy-2,2,8-trimethyl-10-senecioyl-2H,6H-benzo(1,2-b, 5,4-b')dipyran-6-one (1).     

The Genomic Basis of Rapid Adaptation to Antibiotic Combination Therapy in Pseudomonas aeruginosa

Combination therapy is a common antibiotic treatment strategy that aims at minimizing the risk of resistance evolution in several infectious diseases. Nonetheless, evidence supporting its efficacy against the nosocomial opportunistic pathogen Pseudomonas aeruginosa remains elusive. Identification of the possible evolutionary paths to resistance in multidrug environments can help to explain treatment outcome. For this purpose, we here performed whole-genome sequencing of 127 previously evolved populations of P. aeruginosa adapted to sublethal doses of distinct antibiotic combinations and corresponding single-drug treatments, and experimentally characterized several of the identified variants. We found that alterations in the regulation of efflux pumps are the most favored mechanism of resistance, regardless of the environment. Unexpectedly, we repeatedly identified intergenic variants in the adapted populations, often with no additional mutations and usually associated with genes involved in efflux pump expression, possibly indicating a regulatory function of the intergenic regions. The experimental analysis of these variants demonstrated that the intergenic changes caused similar increases in resistance against single and multidrug treatments as those seen for efflux regulatory gene mutants. Surprisingly, we could find no substantial fitness costs for a majority of these variants, most likely enhancing their competitiveness toward sensitive cells, even in antibiotic-free environments. We conclude that the regulation of efflux is a central target of antibiotic-mediated selection in P. aeruginosa and that, importantly, changes in intergenic regions may represent a usually neglected alternative process underlying bacterial resistance evolution, which clearly deserves further attention in the future.     

Development and altered gravity dependent changes in glucose-6-phosphate dehydrogenase activity in the brain of the cichlid fish Oreochromis Mossambicus

Glucose-6-phosphate dehydrogenase activity was studied in the brain of the cichlid fish Oreochromis mossambicus during early ontogenetic development. In general a slight but continuous decrease in enzyme activity was found (9.5 ± 0.5 nmol substrate cleaved per mg protein and per min at developmental stage 13 {=1 day post hatch at 28°C} to a value of 7.9±0.6 in adult brain). In order to investigate the possible influence of altered gravity during early ontogenetic brain development, fish larvae were exposed to an increased acceleration of three times earth gravity (3 g) or to functional weightlessness in a fast-rotating clinostat for 7 days. A significant increase of brain G6PDH activity of approx. 15% was found after exposure to hyper gravity, whereas a significant decrease of the enzyme activity, 10%, was detected following functional weightlessness in respect to the corresponding 1 g controls.

Analyses concerning the regain of normal control enzyme activity of the larvae revealed dramatic fluctuations within the first 5 h after exposure to an increased acceleration of 3 g. Thereafter, between day 1 and day 3 after exposure, brain glucose-6-phosphate dehydrogenase decreased slowly. At day 3 after exposure no further differences of the hyper-g larvae compared to the controls were found. Only slight changes in total brain glucose-6-phosphate dehydrogenase activity occur during ontogenetic development of cichlid fish. This suggests that a more or less constant enzyme activity is important during brain development, but is reacting very sensitively to changes in the environmental factor gravity.     

Neotropical Monogenoidea. 49. Four new species of the Diplectanidae (Dactylogyrinea) from the gills of some pachyurines (Teleostei: Sciaenidae) from the Rio Tocantins and Rio Doce Basins, with the proposal of Anoplectanum n. g. and Spinomatrix n. g.

Four new species of the Diplectanidae from the gills of freshwater sciaenid species (Pachyurinae) in Brazil are described and two new genera, Anoplectanum n. g. and Spinomatrix n. g., are proposed. These are: Diplectanum copiosum n. sp. from Pachyurus junki and Petilipinnis grunniens; Anoplectanum haptorodynatum n. g., n. sp. from Pachyurus junki and Petilipinnis grunniens, and A. microsoma n. g., n. sp. from Petilipinnis grunniens, all in the Tocantins Basin; and Spinomatrix penteormos n. g., n. sp. from Pachyurus adspersus in the Rio Doce Basin. Anoplectanum is proposed to accommodate diplectanids lacking squamodiscs and having a superficial root of the ventral anchor as long or longer than the deep root. Spinomatrix is proposed for species having a haptoral and peduncular armature composed of spines, hooks, anchors, squamodiscs and armed muscular pads.