Geographical variation and systematics of the tetraploid marsh orchid Dactylorhiza majalis subsp. sphagnicola (Orchidaceae) and closely related taxa

Dactylorhiza majalis subsp. sphagnicola is an allotetraploid marsh orchid derived from parents closely similar to present‐day D. incarnata and the western European form of D. maculata subsp. maculata, suggesting that it has a postglacial origin. It extends from northwestern continental Europe into areas formerly covered by the Weichselian ice sheet in mid‐Scandinavia. Here, we studied the variation at both the plastid and nuclear marker systems to describe the geographical variation in subsp. sphagnicola and its evolutionary history. We investigated whether subsp. sphagnicola is affected by secondary hybridization and gene flow from its parental lineages or from other allotetraploid marsh orchids, and we also compared subsp. sphagnicola with other allotetraploids of similar origins. We analysed 492 plants from 50 populations. Thirty‐seven populations were collected as potential Dactylorhiza majalis subsp. sphagnicola, five as subsp. sesquipedalis (D. elata), one as D. elata subsp. brennensis, one as subsp. calcifugiens, one as subsp. occidentalis and the remaining five as populations with some affinity to subsp. lapponica (including D. traunsteineri). All populations were analysed for plastid haplotypes and nuclear internal transcribed spacer (ITS) allele frequencies, and a subset of 43 populations was analysed for five nuclear microsatellite loci. Dactylorhiza majalis subsp. sphagnicola was dominated by a single plastid haplotype that was also dominant in western European D. maculata subsp. maculata, and most of the alternative haplotypes differed by only one mutation from the dominant one. There was more variation in nuclear microsatellites and ITS, and the variation was geographically structured in these markers. Subspecies occidentalis and calcifugiens shared haplotypes with subsp. sphagnicola, whereas subsp. sesquipedalis and brennensis had other haplotypes. Dactylorhiza majalis subsp. sphagnicola may have a postglacial origin within its present continental distribution. It has incorporated genetic material from D. maculata subsp. maculata by secondary hybridization and introgression, and some northern populations have assimilated strongly divergent haplotypes from the northeastern form of D. maculata subsp. maculata. Subspecies sphagnicola has also evolved morphologically divergent local populations in the north that do not differ from the typical populations in genetic markers. It may form mixed populations with other allotetraploid subspecies of D. majalis and, at least at one site, it has become integrated with subsp. lapponica, demonstrating that independently derived allotetraploids may contribute to a common gene pool. Subspecies calcifugiens seems to be derived from subsp. sphagnicola, and further studies based on a larger sample may confirm that it is better recognized as a variety. The so‐called D. elata subsp. brennensis is of hybrid origin and combines markers from subsp. sesquipedalis with markers from the D. majalis core complex, possibly subsp. majalis. The new combination Dactylorhiza majalis subsp. sesquipedalis (Willd.) H.A.Pedersen & Hedrén comb. nov. is provided. © 2012 The Linnean Society of London, Botanical Journal of the Linnean Society, 2012, 168 , 174–193.     

Changes in the gene expression profiles of the brains of male European eels (Anguilla anguilla) during sexual maturation

Background

The vertebrate brain plays a critical role in the regulation of sexual maturation and reproduction by integrating environmental information with developmental and endocrine status. The European eel Anguilla anguilla is an important species in which to better understand the neuroendocrine factors that control reproduction because it is an endangered species, has a complex life cycle that includes two extreme long distance migrations with both freshwater and seawater stages and because it occupies a key position within the teleost phylogeny. At present, mature eels have never been caught in the wild and little is known about most aspects of reproduction in A. anguilla. The goal of this study was to identify genes that may be involved in sexual maturation in experimentally matured eels. For this, we used microarrays to compare the gene expression profiles of sexually mature to immature males.

Results

Using a false discovery rate of 0.05, a total of 1,497 differentially expressed genes were identified. Of this set, 991 were expressed at higher levels in brains (forebrain and midbrain) of mature males while 506 were expressed at lower levels relative to brains of immature males. The set of up-regulated genes includes genes involved in neuroendocrine processes, cell-cell signaling, neurogenesis and development. Interestingly, while genes involved in immune system function were down-regulated in the brains of mature males, changes in the expression levels of several receptors and channels were observed suggesting that some rewiring is occurring in the brain at sexual maturity.

Conclusions

This study shows that the brains of eels undergo major changes at the molecular level at sexual maturity that may include re-organization at the cellular level. Here, we have defined a set of genes that help to understand the molecular mechanisms controlling reproduction in eels. Some of these genes have previously described functions while many others have roles that have yet to be characterized in a reproductive context. Since most of the genes examined here have orthologs in other vertebrates, the results of this study will contribute to the body of knowledge concerning reproduction in vertebrates as well as to an improved understanding of eel biology.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-799) contains supplementary material, which is available to authorized users.     

Comparative genome scan detects host‐related divergent selection in the grasshopper Hesperotettix viridis

In this study, we used a comparative genome scan to examine patterns of population differentiation with respect to host plant use in Hesperotettix viridis, a Nearctic oligophagous grasshopper locally specialized on various Asteraceae including Solidago, Gutierrezia, and Ericameria. We identified amplified fragment length polymorphism (AFLP) loci with significantly elevated F_ST (outlier loci) in multiple different‐host and same‐host comparisons of populations while controlling for geographic distance. By comparing the number and identities of outlier loci in different‐host vs. same‐host comparisons, we found evidence of host plant‐related divergent selection for some population comparisons (Solidago‐ vs. Gutierrezia‐feeders), while other comparisons (Ericameria‐ vs. Gutierrezia‐feeders) failed to demonstrate a strong role for host association in population differentiation. In comparisons of Solidago‐ vs. Gutierrezia‐feeding populations, a relatively high number of outlier loci observed repeatedly in different‐host comparisons (35% of all outliers and 2.7% of all 625 AFLP loci) indicated a significant role for host‐related selection in contributing to overall genomic differentiation in this grasshopper. Mitochondrial DNA sequence data revealed a star‐shaped phylogeny with no host‐ or geography‐related structure, low nucleotide diversity, and high haplotype diversity, suggesting a recent population expansion. mtDNA data do not suggest a long period of isolation in separate glacial refugia but are instead more compatible with a single glacial refugium and more recent divergence in host use. Our study adds to research documenting heterogeneity in differentiation across the genome as a consequence of divergent natural selection, a phenomenon that may occur as part of the process of ecological speciation.     

A clonal selection based timecourse model for antibody responses to killed vaccine, with applications to foot and mouth disease.

Published models for the timecourse of the immune response are reviewed for their applicability to data from animals that have been injected with killed vaccine. Simple models are required so that statistical fitting procedures become straightforward. A class of models that incorporates the concept of clonal selection has been found useful. Immune memory is described in terms of persistence of mean antibody affinity when the overall concentration of antibody has declined towards background. The model is demonstrated on multipoint affinity distributions and initial negative exponential densities, from which conditions for boundedness can be developed. Predictions are made that are consistent with experiments on the evolution of immunoassay data using foot and mouth disease vaccine.     

Synthesis of Two Natural Salmon Calcitonins

The structure of calcitonin isolated from salmon¹ (SCT 1) has been recently established² and confirmed by synthesis⁸. It possesses an exceptionally high level of activity, exhibiting about 20–50 times the hypocalcaemic potency of any other calcitonin isolated from mammalian species.     

Hatching of the winter eggs of the fruit-tree red spider mite (Panonychus ulmi (Koch))

Observations on the hatching of winter eggs of Panonychus ulmi (Koch) from apple orchards in England over the 5 years 1962-6 are described. Differences of 2–3 weeks between orchards in the date at which 50% hatch was reached were quite common and this was out of step with petal fall in the majority of orchards. There was a continuous range between early and late hatching populations and a tendency for the populations to hatch in the same order every year. In 1966 populations on Cox's Orange Pippin hatched earlier than those on Worcester Pearmain but the difference was unlikely to be of practical importance. Neither recording accumulated day degrees for populations hatched out-of-doors nor hatching in an incubator after chilling was considered to give a sufficiently reliable forecast of 50% hatch but observations in 1966 suggested that this might be predicted from the total eggs hatched in an incubator expressed as a percentage of total healthy eggs.     

Monograph of the genus Brighamia (Lobeliaceae).Hawaiian Plant Studies 29

The Hawaiian genus Brighamia (Lobeliaceae) was published in 1868 as monotypic, and it long remained so, even though it occurs on four islandS. It is a spectacular herb with a simple, thickened, fleshy, stem 1–5 m tall, with the leaves terminal and crowded, and subtended by them are the fragrant, salver-shaped flowers 12–15 cm in length. Further explorations have revealed new localities, mostly on the cliff faces of the windward sides of the islands. The present investigation has revealed significant differential characters in the calyx lobes, the flower colour, the hairiness of the filament tube and the anther connective, and the nature of the seed testa. Hence, the following new taxa are described: B.citrina var. napaliensis, B.rockii and B.rockii forma longiloba and B.remyi.     

An indirect sandwich enzyme labelled immunosorbent assay for the detection of foot and mouth disease virus immunizing antigen in tissue culture harvests

The optimum conditions for an indirect sandwich enzyme-linked immunosorbent assay for foot and mouth disease virus 140S antigen assay are described. Factors which could contribute to the variation in the test were investigated and a calibration coefficient for the conversion of ELISA values to antigen concentration in micrograms of 140S antigen per millilitre was calculated. Antigen mass in nine tissue culture harvests was estimated and these correlated well with estimates made by sucrose density gradients (r = 0.95).