The ecological characteristics of idiosyncratic and nested diatoms

Nestedness represents the degree to which species assemblages are proper subsets of larger assemblages. Highly nested assemblages are characterized by a high number of species conforming to nested subset pattern and a low number of species which depart from nested pattern, that is, idiosyncratic species. The main aims of this paper were to (i) examine whether local stream habitat factors and spatial variables govern the number of nested stream diatom species at sites, (ii) to examine whether nested and idiosyncratic species differ in ecological characteristics, and (iii) to study if these distinctions have implications for turnover in stream diatom communities. Stream diatom communities showed a highly significant nested pattern, with observed matrix temperature of 28.4 degrees C. However, number of idiosyncratic species was high, constituting 44% of total species number of the survey. The number of nested species at sites was not related to any of the measured habitat factors or geographical location of the sampling sites. Idiosyncratic species were significantly (ANOVA: P=0.002) more widely distributed than nested species. Partial mantel tests showed that idiosyncratic species exhibited faster turnover along geographical and environmental distance than nested species. These data showed that although the degree of nestedness was highly significant, stream diatom communities were nevertheless characterized by a number of idiosyncratic species departing from the nested subset pattern. It seems that the compositional turnover is faster in communities that are dominated by idiosyncratic species suggesting that turnover diversity in diatoms may be governed more by the distribution of idiosyncratic species.     

Perlecan is recruited by dystroglycan to nodes of Ranvier and binds the clustering molecule gliomedin

Fast neural conduction requires accumulation of Na⁺ channels at nodes of Ranvier. Dedicated adhesion molecules on myelinating cells and axons govern node organization. Among those, specific laminins and dystroglycan complexes contribute to Na⁺ channel clustering at peripheral nodes by unknown mechanisms. We show that in addition to facing the basal lamina, dystroglycan is found near the nodal matrix around axons, binds matrix components, and participates in initial events of nodogenesis. We identify the dystroglycan-ligand perlecan as a novel nodal component and show that dystroglycan is required for the selective accumulation of perlecan at nodes. Perlecan binds the clustering molecule gliomedin and enhances clustering of node of Ranvier components. These data show that proteoglycans have specific roles in peripheral nodes and indicate that peripheral and central axons use similar strategies but different molecules to form nodes of Ranvier. Further, our data indicate that dystroglycan binds free matrix that is not organized in a basal lamina.     

Deletion of the Laminin α4 Chain Leads to Impaired Microvessel Maturation

The laminin alpha4 chain, a component of laminin-8 and -9, is expressed in basement membranes, such as those beneath endothelia, the perineurium of peripheral nerves, and around developing muscle fibers. Laminin alpha4-null mice presented with hemorrhages during the embryonic and neonatal period and had extensive bleeding and deterioration of microvessel growth in experimental angiogenesis, as well as mild locomotion defects. Histological examination of newborn mice revealed delayed deposition of type IV collagen and nidogen into capillary basement membranes, and electron microscopy showed discontinuities in the lamina densa. The results demonstrate a central role for the laminin alpha4 chain in microvessel growth and, in the absence of other laminin alpha chains, in the composition of endothelial basement membranes.     

Vascular endothelial growth factor (VEGF)/VEGF-C mosaic molecules reveal specificity determinants and feature novel receptor binding patterns

Vascular endothelial growth factors (VEGFs) and their receptors play key roles in angiogenesis and lymphangiogenesis. VEGF activates VEGF receptor-1 (VEGFR-1) and VEGFR-2, whereas VEGF-C activates VEGFR-2 and VEGFR-3. We have created a library of VEGF/VEGF-C mosaic molecules that contains factors with novel receptor binding profiles, notably proteins binding to all three VEGF receptors ("super-VEGFs"). The analyzed super-VEGFs show both angiogenic and lymphangiogenic effects in vivo, although weaker than the parental molecules. The composition of the VEGFR-3 binding molecules and scanning mutagenesis revealed determinants of receptor binding and specificity. VEGFR-2 and VEGFR-3 showed striking differences in their requirements for VEGF-C binding; extracellular domain 2 of VEGFR-2 was sufficient, whereas in VEGFR-3, both domains 1 and 2 were necessary.     

Carabid beetles (Coleoptera: Carabidae) at forest-farmland edges in southern Finland

We studied carabid beetle abundance at eight forest-farmland edges using pitfall traps across 60-m gradients (30 m into the forest, 30 m into the adjacent farmland) in southern Finland in May–August 2001. Carabid assemblages changed gradually across the studied gradients, the most drastic changes occurring right at the edge (5 m). Forest-associated carabids were often caught in farmland habitat within 20–30 m from the edges, and open-habitat carabids were also caught in the forest patches. However, these two groups responded to the edge in slightly different ways. Forest carabids were abundant all across the gradient from forest interior to the edge ( 80 m 9), while open-habitat carabids showed a drastic abundance decrease toward the forest, 5–10 m before the edge the abundance-change slope across the edge: gradient was steeper for open-habitat than for forest carabids. Wing-dimorphic and long-winged carabids increased more steeply from forest to farmland, compared to short-winged carabids. Moreover, carabids associated with dry and moist habitat showed indications of stronger response to the edge than did eurytopic species. The pair-wise comparisons between predatory/mixed-diet carabids and seed-eaters, spring and autumn breeders, and day- and night-active species did not indicate edge-response differences.     

The roles of environment and space in shaping stream diatom communities

Diatoms are widely used in stream quality assessment due to their response to the local environment. Diatoms are also influenced by many large-scale processes and so the diatom communities of boreal streams incorporate a strong spatial component at a regional level. What is not properly known yet is whether the variation in diatom communities between regions is larger than the variation in measured environmental variables. We studied the roles of environment and space in accounting for variability in stream diatom communities across four regions in Finland. According to canonical correspondence analysis, geographical coordinates, nutrient concentrations (total N and P), and water conductivity were the most important factors affecting variation in diatom community composition. Of physical factors, depth and current velocity were also significant. According to Mantel tests, both environmental and geographical distances were related to dissimilarity in diatom community composition. Analysis of Similarities indicated that the regional differences in diatom community composition were larger than the regional differences in environmental variables. We also found many indicator species confined to certain regions. Our results suggest that the four study regions differ in their diatom species composition more than in their environmental features and that diatoms are structured not only by the local environment but also by large-scale processes, possibly related to history, climate and dispersal. These results imply that, while diatom species composition reflects well the environmental differences between regions, future bioassessments would benefit from regional stratification. Otherwise, relationships with environmental variables may be masked by trans-regional differences in species pools caused by the large-scale processes.     

AMP-activated protein kinase: a potential player in Alzheimer's disease

AMP-activated protein kinase (AMPK) stimulates energy production via glucose and lipid metabolism, whereas it inhibits energy consuming functions, such as protein and cholesterol synthesis. Increased cytoplasmic AMP and Ca(2+) levels are the major activators of neuronal AMPK signaling. Interestingly, Alzheimer's disease (AD) is associated with several abnormalities in neuronal energy metabolism, for example, decline in glucose uptake, mitochondrial dysfunctions and defects in cholesterol metabolism, and in addition, with problems in maintaining Ca(2+) homeostasis. Epidemiological studies have also revealed that many metabolic and cardiovascular diseases are risk factors for cognitive impairment and sporadic AD. Emerging studies indicate that AMPK signaling can regulate tau protein phosphorylation and amyloidogenesis, the major hallmarks of AD. AMPK is also a potent activator of autophagic degradation which seems to be suppressed in AD. All these observations imply that AMPK is involved in the pathogenesis of AD. However, the responses of AMPK activation are dependent on stimulation and the extent of activating stress. Evidently, AMPK signaling can repress and delay the appearance of AD pathology but later on, with increasing neuronal stress, it can trigger detrimental effects that augment AD pathogenesis. We will outline the potential role of AMPK function in respect to various aspects affecting AD pathogenesis.