Incidence of HIV in Windhoek, Namibia: demographic and socio-economic associations

Objective

To estimate HIV incidence and prevalence in Windhoek, Namibia and to analyze socio-economic factors related to HIV infection.

Method

In 2006/7, baseline surveys were performed with 1,753 private households living in the greater Windhoek area; follow-up visits took place in 2008 and 2009. Face-to-face socio-economic questionnaires were administrated by trained interviewers; biomedical markers were collected by nurses; GPS codes of household residences were recorded.

Results

The HIV prevalence in the population (aged>12 years) was 11.8% in 2006/7 and 14.6% in 2009. HIV incidence between 2007 and 2009 was 2.4 per 100 person year (95%CI = 1.9–2.9). HIV incidence and prevalence were higher in female populations. HIV incidence appeared non-associated with any socioeconomic factor, indicating universal risk for the population. For women a positive trend was found between low per-capita consumption and HIV acquisition. A HIV knowledge score was strongly associated with HIV incidence for both men and women. High HIV prevalence and incidence was concentrated in the north-western part of the city, an area with lower HIV knowledge, higher HIV risk perception and lower per-capita consumption.

Discussion

The HIV incidence and prevalence figures do not suggest a declining epidemic in Windhoek. Higher vulnerability of women is recorded, most likely related to economic dependency and increasing transactional sex in Namibia. The lack of relation between HIV incidence and socio-economic factors confirms HIV risks for the overall urban community. Appropriate knowledge is strongly associated to lower HIV incidence and prevalence, underscoring the importance of continuous information and education activities for prevention of infection. Geographical areas were identified that would require prioritized HIV campaigning.     

Predicted warming and browning affect timing and magnitude of plankton phenological events in lakes: a mesocosm study

1. Aquatic ecosystems in Northern Europe are expected to face increases in temperature and water colour (TB) in future. While effects of these factors have been studied separately, it is unknown whether and how a combination of them might affect phenological events and trophic interactions. 2. In a mesocosm study, we combined both factors to create conditions expected to arise during the coming century. We focused on quantifying effects on timing and magnitude of plankton spring phenological events and identifying possible mismatches between resources (phytoplankton) and consumers (zooplankton). 3. We found that the increases in TB had important effects on timing and abundance of different plankton groups. While increased temperature led to an earlier peak in phytoplankton and zooplankton and a change in the relative timing of different zooplankton groups, increased water colour reduced chlorophyll‐a concentrations. 4. Increased TB together benefitted cladocerans and calanoid copepods and led to stronger top‐down control of algae by zooplankton. There was no sign of a mismatch between primary producers and grazers as reported from other studies. 5. Our results point towards an earlier onset of plankton spring growth in shallow lakes in future with a stronger top‐down control of phytoplankton by zooplankton grazers.     

Reproductive Biology and Protandrous Hermaphroditism in Acanthopagrus latus

Detailed macroscopic and histological studies of the gonads of a full size and age range of Acanthopagrus latus from each season in Shark Bay, Western Australia, demonstrate that this species is a protandrous hermaphrodite in this large subtropical embayment. Although our scheme for the changes that occur in the ovotestes of A. latus during life is not consistent with some of the conclusions drawn for this species elsewhere, it is similar to that of Pollock (1985 J. Fish. Biol. 26: 301–311) for the congeneric Acanthopagrus australis. The ovotestes of males develop from gonads which contain substantial amounts of both testicular and ovarian tissue. The testicular component of the ovotestes of all males regresses markedly after spawning. During the next spawning season, the ovotestes either become gonads in which the testicular zone again predominates and contains spermatids and spermatozoa (functional males), or gonads in which the ovarian zone now predominates and contains mature oocytes (functional females). Once a fish has become a functional female, it remains a female throughout the rest of its life. In Shark Bay, A. latustypically spawns on a limited number of occasions during a short period in late winter and early spring and has determinate fecundity. The mean potential annual fecundity was ca. 2000000. The total length of 245mm, at which, during the spawning period, 50% of A. latus become identifiable as males, is very similar to the current minimum legal length (MLL) of 250mm, which corresponds to an age of ca. 2.5 years less than that at which 50% of males become females. Thus, although the spawning potential ratio suggests that the present fishing pressure is sustainable, the current MLL should be reviewed if recreational fishing pressure continues to increase.     

Histological changes in the orbital region of rats after orbital puncture.

To contribute to the assessment of the degree of discomfort in rats after orbital puncture, we have examined the histological changes in the intraorbital tissues caused by this technique of blood sampling. Orbits were studied from rats euthanized either within 1 min, 4 days, 28 days or 56 days after puncture while under diethyl-ether anaesthesia. The techniques of 2 animal technicians were compared, one using a broken haematocrit capillary and the other using an intact Pasteur's pipette. Non-punctured orbits served as controls. Microscopic slides containing the eye in situ at 2 horizontal levels in the orbital region were examined for 37 parameters; the slides were scored blind and in random order. Orbital puncture caused haemorrhages in the puncture track and, depending on the technique used, also in the periosteum. Four days after puncture, inflammatory reactions were present in the puncture track. Depending on the technique of puncture, these reactions were also seen in the eye muscles and periosteum or in the Harderian gland. Within 4 weeks after puncture, the lesions had healed without detectable scars. The different histological effects of the 2 techniques of orbital puncture are discussed in the light of the characteristics of these techniques.     

Comparisons between the biology of two co-occurring species of whiting (Sillaginidae) in a large marine embayment

Synopsis We compare the biology of the tropical species Sillago analis and the temperate species Sillago schomburgkii in Shark Bay, a large subtropical marine embayment on the west coast of Australia. This environment constitutes approximately the southernmost and northernmost limits of the distributions of these two species, respectively. The annuli visible in sectioned otoliths of S. analis and S. schomburgkii form annually. Their numbers were thus used to age the individuals of these two species, which are morphologically very similar and live in the same habitats. Although the growth rates of S. analis and S. schomburgkii are very similar until maturity is attained, they subsequently diverge, with S. schomburgkii investing relatively more energy into somatic growth. The maximum total lengths and ages of both the females (320 mm, 6 years) and males (283 mm, 8 years) of S. analis were not as great as those of the females (383 mm, 9 years) and males (302 mm, 9 years) of S. schomburgkii. In Shark Bay, S. schomburgkii spawns earlier and longer than S. analis, i.e. August–December vs. January–March, which would result in the juveniles of these two species recruiting into nursery areas at different times. In addition, S. schomburgkii spawns earlier and for longer in Shark Bay than in temperate marine waters 800 km further south, presumably reflecting the fact that, in that subtropical embayment, water temperatures over which this species typically spawns are attained earlier and last for longer. However, although environmental conditions in Shark Bay and those temperate marine waters differ markedly, the growth of the corresponding sexes of S. schomburgkii in these two water bodies is similar.     

Selecting representative model micro-organisms

Background

The sexually transmitted disease, gonorrhea, is a serious health problem in developed as well as in developing countries, for which treatment continues to be a challenge. The recent completion of the genome sequence of the causative agent, Neisseria gonorrhoeae, opens up an entirely new set of approaches for studying this organism and the diseases it causes. Here, we describe the initial phases of the construction of an expression-capable clone set representing the protein-coding ORFs of the gonococcal genome using a recombination-based cloning system.

Results

The clone set thus far includes 1672 of the 2250 predicted ORFs of the N. gonorrhoeae genome, of which 1393 (83%) are sequence-validated. Included in this set are 48 of the 61 ORFs of the gonococcal genetic island of strain MS11, not present in the sequenced genome of strain FA1090. L-arabinose-inducible glutathione-S-transferase (GST)-fusions were constructed from random clones and each was shown to express a fusion protein of the predicted size following induction, demonstrating the use of the recombination cloning system. PCR amplicons of each ORF used in the cloning reactions were spotted onto glass slides to produce DNA microarrays representing 2035 genes of the gonococcal genome. Pilot experiments indicate that these arrays are suitable for the analysis of global gene expression in gonococci.

Conclusion

This archived set of Gateway^® entry clones will facilitate high-throughput genomic and proteomic studies of gonococcal genes using a variety of expression and analysis systems. In addition, the DNA arrays produced will allow us to generate gene expression profiles of gonococci grown in a wide variety of conditions. Together, the resources produced in this work will facilitate experiments to dissect the molecular mechanisms of gonococcal pathogenesis on a global scale, and ultimately lead to the determination of the functions of unknown genes in the genome.     

A mutation in aspergillus nidulans that blocks the transition from interphase to prophase

In order to develop a method for obtaining mitotic synchrony in aspergillus nidulans, we have characterized previously isolated heat-sensitive nim mutations that block the nuclear division cycle in interphase at restrictive temperature. After 3.5 h at restrictive temperature the mitotic index of a strain carrying one of these mutations, nimA5, was 0, but when this strain was subsequently shifted from restrictive to permissive temperature the mitotic index increased rapidly, reaching a maximum of 78 percent after 7.5 min. When this strain was examined electron-microscopically, mitotic spindles were absent at restrictive temperature. From these data we conclude that at restrictive temperature nimA5 blocks the nuclear division cycle at a point immediately preceding the initiation of chromosomal condensation and mitotic microtubule assembly, and upon shifting to permissive control over the initiation of microtubule assembly and chromosomal condensation in vivo through a simple temperature shift and, consequently, nimA5 should be a powerful tool for studying these processes. Electron-microscopic examination of spindles of material synchronized in this manner reveals that spindle formation, although very rapid, is gradual in the sense that spindle microtubule numbers increase as spindle formation proceeds.     

Implications of the divergent use of a suite of estuaries by two exploited marine fish species

Biological characteristics of the marine species King George whiting Sillaginodes punctatus and Australian herring Arripis georgianus in three seasonally open estuaries (Broke, Irwin and Wilson Inlets), one permanently open estuary (Oyster Harbour) and one normally closed estuary (Wellstead Estuary) on the south coast of Western Australia have been determined and compared. Sillaginodes punctatus enters the seasonally and permanently open estuaries early in life and reaches total lengths (L(T)) >280 mm at which it can be legally retained and thus contributes to commercial and recreational fisheries in these systems. This sillaginid almost invariably emigrates from these estuaries before reaching its typical size at maturity (L(T50)) and does not return after spawning in marine waters. In contrast, virtually all female A. georgianus (≥ 98%) in the three seasonally open estuaries and the majority in the normally closed (89·5%) and permanently open estuaries (83%) exceeded the L(T50) of this species at maturity, reflecting the fact that the nursery areas of this species are predominantly located much further to the east. Although adult females of A. georgianus in seasonally open and normally closed estuaries had developed mature ovaries by autumn, at which time they were prevented from migrating to the sea by closure of the estuary mouths, this species did not spawn in those estuaries. The oocytes in their ovaries were undergoing extensive atresia, a process that had been incipient prior to oocyte maturation. As the adult females of A. georgianus in the permanently open Oyster Harbour at this time all possessed resting gonads, i.e. their oocytes were all previtellogenic, the adults that were present in that estuary earlier and were destined to spawn in autumn must have emigrated from that permanently open estuary to their marine spawning areas prior to the onset of gonadal recrudescence. The body masses at length of A. georgianus, which were almost invariably higher in summer and autumn than in winter and spring, were greater in the very productive environments of the seasonally open and normally closed estuaries than in the less productive and essentially marine environment of Oyster Harbour and coastal marine waters. In general, the same pattern of differences between water bodies was exhibited by the growth of A. georgianus and by the more restricted data for body mass at L(T) and growth of S. punctatus. Despite an increase in anthropogenic activities in Wilson Inlet over the last two decades, the growth of both species was very similar to that recorded 20 years earlier. The fisheries implications of the results for the two species are discussed.