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601.
Early steps of the hepatitis C virus life cycle 总被引:2,自引:0,他引:2
To replicate its genome, a virus needs to cross the plasma membrane of a host cell and get access to cytosolic and/or nuclear components. For an enveloped virus, this involves binding to the plasma membrane, followed by migration of the virion to a microdomain or an endosomal vesicle where fusion between the virion envelope and a host cell membrane occurs. Increasing evidences indicate that virus entry is a tightly regulated process. Although we are still far from understanding the details of hepatitis C virus (HCV) entry, recent data show that this virus enters into target cells in a slow and complex multistep process involving the presence of several entry factors. Initial attachment of the virion may involve glycosaminoglycans and the low-density lipoprotein receptor, and it is followed by the sequential interaction with the scavenger receptor class B type I, the tetraspanin CD81 and tight junction protein Claudin-1, -6 or -9. Furthermore, the identification of EWI-2wint as a new partner of CD81 which blocks E2–CD81 interaction provides additional evidence of the complexity of the HCV entry process. The current knowledge accumulated on HCV entry is summarized in this review. 相似文献
602.
David Burdick Russell DeOrazio Peter Guzzo Alicia Habershaw Mark Helle Bernard Paul Mark Wolf 《Bioorganic & medicinal chemistry letters》2010,20(4):1424-1426
A novel series of Δ9-tetrahydrocannabinol (Δ9-THC) analogues were synthesized to determine their potential as cannabinoid receptor modulators. Chemistry focused on conversion of the phenol of Δ9-THC to other functionality through palladium catalyzed reactions with an intermediate triflate 2. Two analogues with sub 100 nM affinity for the CB1 and CB2 receptors were identified. 相似文献
603.
Farzin Roohvand Patrick Maillard Jean-Pierre Lavergne Steeve Boulant Marine Walic Ursula Andréo Lucie Goueslain Fran?ois Helle Adeline Mallet John McLauchlan Agata Budkowska 《The Journal of biological chemistry》2009,284(20):13778-13791
Early events leading to the establishment of hepatitis C virus (HCV)
infection are not completely understood. We show that intact and dynamic
microtubules play a key role in the initiation of productive HCV infection.
Microtubules were required for virus entry into cells, as evidenced using
virus pseudotypes presenting HCV envelope proteins on their surface. Studies
carried out using the recent infectious HCV model revealed that microtubules
also play an essential role in early, postfusion steps of the virus cycle.
Moreover, low concentrations of vinblastin and nocodazol,
microtubule-affecting drugs, and paclitaxel, which stabilizes microtubules,
inhibited infection, suggesting that microtubule dynamic instability and/or
treadmilling mechanisms are involved in HCV internalization and early
transport. By protein chip and direct core-dependent pull-down assays,
followed by mass spectrometry, we identified β- and α-tubulin as
cellular partners of the HCV core protein. Surface plasmon resonance analyses
confirmed that core directly binds to tubulin with high affinity via amino
acids 2-117. The interaction of core with tubulin in vitro promoted
its polymerization and enhanced the formation of microtubules. Immune electron
microscopy showed that HCV core associates, at least temporarily, with
microtubules polymerized in its presence. Studies by confocal microscopy
showed a juxtaposition of core with microtubules in HCV-infected cells. In
summary, we report that intact and dynamic microtubules are required for virus
entry into cells and for early postfusion steps of infection. HCV may exploit
a direct interaction of core with tubulin, enhancing microtubule
polymerization, to establish efficient infection and promote virus transport
and/or assembly in infected cells.HCV5 infection is a
major cause of chronic liver disease, which frequently progresses to cirrhosis
and hepatocellular carcinoma. HCV represents a global public health problem,
with 130 million people infected worldwide. There is currently no vaccine
directed against HCV and the available antiviral treatments eliminate the
virus in 40-80% of patients, depending on the virus genotype (for review, see
Ref. 1).HCV has a single-stranded, positive-sense RNA genome of ∼9.6 kilobases
encoding a large polyprotein that is processed by both host and viral
proteases to produce three structural proteins (core protein and the envelope
glycoproteins E1 and E2), p7, and six nonstructural proteins, which are
involved in polyprotein processing and replication of the virus genome (for
review, see Ref. 2).HCV core is a basic protein, synthesized as the most N-terminal component
of the polyprotein, and is followed by the signal sequence of the E1 envelope
glycoprotein (3). The
polypeptide is cleaved by signal peptidase and signal peptide peptidase,
resulting in the release of core from the endoplasmic reticulum membrane and
its trafficking to lipid droplets
(3-5).
Mature core protein forms the viral nucleocapsid
(6) and consists of two
domains, D1 and D2. D1 lies at the protein N terminus, is composed of about
117 amino acids (aa), and is involved in RNA binding
(7). D2 is relatively
hydrophobic, has a length of about 55 aa, and targets HCV core to lipid
droplets (8).Microtubules (MTs) are ubiquitous cytoskeleton components that play a key
role in various cellular processes relating to cell shape and division,
motility, and intracellular trafficking
(9). MTs are dynamic, polarized
polymers composed of α/β-tubulin heterodimers that undergo
alternate phases of growth and shrinkage, dependent on so-called
“dynamic instability”
(10). Active transport by MTs
is bidirectional and involves both plus and minus end-directed motors: kinesin
and dynein (11,
12).Another mechanism of cytosolic transport on MTs, called
“treadmilling”
(13,
14) involves polymerization at
the plus end and depolymerization at the minus end after severing of MTs by
cellular katenin (15).MTs have important functions in the life cycle of most viruses
(13,
16,
17). Cytoplasmic transport on
MTs provides viruses with the means to reach sites of replication or enables
progeny virus to leave the infected cell. Some viruses, such as Ebola virus
(18) or reovirus
(19), are transported on MTs
within membranous compartments, whereas other viruses like herpes simplex
virus type 1 (20), murine
polyoma virus (21), human
cytomegalovirus (22), or
adenovirus (23) interact with
MT motors or MT-associated proteins to allow their transport along
microtubules.Previous studies have established that the cell cytoskeleton is involved in
HCV replication, since HCV replication complexes are subjected to
intracellular transport and their formation is closely linked to the dynamic
organization of endoplasmic reticulum, actin filaments, and the microtubule
network
(24-26).
In addition, intact microtubules are essential for viral morphogenesis and the
secretion of progeny virus from infected cells
(27). The role of microtubules
in HCV cell entry and the initiation of productive HCV infection has not yet
been addressed.In this study, we provide evidence that the MT network plays a key role in
HCV cell entry and postfusion steps of the virus cycle that lead to the
establishment of productive HCV infection. The initial steps of the viral
cycle are sensitive to MT-affecting drugs that inhibit MT formation or
depolymerize or stabilize microtubules. We also show a unique property of the
HCV core protein, its capacity to directly bind to tubulin and to enhance MT
polymerization in vitro. Our findings suggest that HCV could exploit
the MT network by polymerization-related mechanisms to productively infect its
target cell. Thus, microtubules may provide a novel target for therapeutic
interventions against HCV infection. 相似文献
604.
Tim A. Bruckner Samuli Helle Elisabeth Bolund Virpi Lummaa 《Proceedings. Biological sciences / The Royal Society》2015,282(1799)
Theoretical and empirical literature asserts that the sex ratio (i.e. M/F) at birth gauges the strength of selection in utero and cohort quality of males that survive to birth. We report the first individual-level test in humans, using detailed life-history data, of the ‘culled cohort’ hypothesis that males born to low annual sex ratio cohorts show lower than expected infant mortality and greater than expected lifetime reproductive success. We applied time-series and structural equation methods to a unique multigenerational dataset of a natural fertility population in nineteenth century Finland. We find that, consistent with culled cohorts, a 1 s.d. decline in the annual cohort sex ratio precedes an 8% decrease in the risk of male infant mortality. Males born to lower cohort sex ratios also successfully raised 4% more offspring to reproductive age than did males born to higher cohort sex ratios. The offspring result, however, falls just outside conventional levels of statistical significance. In historical Finland, the cohort sex ratio gauges selection against males in utero and predicts male infant mortality. The reproductive success findings, however, provide weak support for an evolutionarily adaptive explanation of male culling in utero. 相似文献
605.
Siv Nam Khang Hoff Helle T. Baalsrud Ave Tooming‐Klunderud Morten Skage Todd Richmond Gregor Obernosterer Reza Shirzadi Ole Kristian Trresen Kjetill S. Jakobsen Sissel Jentoft 《Molecular ecology resources》2019,19(1):245-259
Combining high‐throughput sequencing with targeted sequence capture has become an attractive tool to study specific genomic regions of interest. Most studies have so far focused on the exome using short‐read technology. These approaches are not designed to capture intergenic regions needed to reconstruct genomic organization, including regulatory regions and gene synteny. Here, we demonstrate the power of combining targeted sequence capture with long‐read sequencing technology for comparative genomic analyses of the haemoglobin (Hb) gene clusters across eight species separated by up to 70 million years. Guided by the reference genome assembly of the Atlantic cod (Gadus morhua) together with genome information from draft assemblies of selected codfishes, we designed probes covering the two Hb gene clusters. Use of custom‐made barcodes combined with PacBio RSII sequencing led to highly continuous assemblies of the LA (~100 kb) and MN (~200 kb) clusters, which include syntenic regions of coding and intergenic sequences. Our results revealed an overall conserved genomic organization of the Hb genes within this lineage, yet with several, lineage‐specific gene duplications. Moreover, for some of the species examined, we identified amino acid substitutions at two sites in the Hbb1 gene as well as length polymorphisms in its regulatory region, which has previously been linked to temperature adaptation in Atlantic cod populations. This study highlights the use of targeted long‐read capture as a versatile approach for comparative genomic studies by generation of a cross‐species genomic resource elucidating the evolutionary history of the Hb gene family across the highly divergent group of codfishes. 相似文献
606.
Qing Zhang Helle H. Petersen Henrik Ostergaard Wolfram Ruf Arthur J. Olson 《Proteins》2009,77(3):559-569
Signaling of the tissue factor‐FVIIa complex regulates angiogenesis, tumor growth, and inflammation. TF‐FVIIa triggers cell signaling events by cleavage of protease activated receptor (PAR2) at the Arg36‐Ser37 scissile bond. The recognition of PAR2 by the FVIIa protease domain is poorly understood. We perform molecular modeling and dynamics simulations to derive the PAR2‐FVIIa interactions. Docking of the PAR2 Arg36‐Ser37 scissile bond to the S1 site and subsequent molecular dynamics leads to interactions of the PAR2 ectodomain with P and P′ sites of the FVIIa catalytic cleft as well as to electrostatic interactions between a stably folded region of PAR2 and a cluster of basic residues remote from the catalytic cleft of FVIIa. To address the functional significance of this interaction for PAR2 cleavage, we employed two antibodies with epitopes previously mapped to this cluster of basic residues. Although these antibodies do not block the catalytic cleft, both antibodies completely abrogated PAR2 activation by TF‐FVIIa. Our simulations indicate a conformation of the PAR2 ectodomain that limits the cleavage site to no more than 33 Å from its membrane proximal residue. Since the active site of FVIIa in the TF‐FVIIa complex is ~75 Å above the membrane, cleavage of the folded conformation of PAR2 would require tilting of the TF‐FVIIa complex toward the membrane, indicating that additional cellular factors may be required to properly align the scissile bond of PAR2 with TF‐FVIIa. Proteins 2009. © 2009 Wiley‐Liss, Inc. 相似文献
607.
Human twinning rates are considered to either reflect the direct fitness effects of twinning in variable environments, or to be a maladaptive by-product of selection for other maternal reproductive traits (e.g., polyovulation). We used historical data (1710-1890) of Sami populations from Northern Scandinavia to contrast these alternative hypotheses. We found that women who produced twins started their reproduction younger, ceased it later, had higher lifetime fecundity, raised more offspring to adulthood, and had higher fitness (individual lambda) than mothers of singletons in all populations studied. For example, an average of 1.2 offspring survived to adulthood from a twin delivery, irrespective of its sex ratio, whereas only 0.8 offspring survived to adulthood from a singleton delivery. Only if mothers started reproduction at very late age (> 37 yr), or had a very long reproductive life span (> 20 yr), was it more beneficial to produce only singletons. These findings suggest that twin deliveries among Sami could not be explained as a maladaptive by-product of selection for other maternal reproductive traits. In contrast, our results suggest that twinning was under natural selection, although the strength of selection was likely to have been context dependent. 相似文献
608.
Endothelium-independent vasoconstrictor responses in isolated segments of human internal thoracic artery (ITA) and saphenous vein (SV) were used as a bioassay system for the vasoinhibitory activity of bovine chromogranin A (CGA). Preincubation with vasostatin (0.8 micrograms/ml), containing the N-terminal domain of CGA, (CGA1-76, CGA1-113 and CGA1-143ff), inhibited the contractile responses evoked by 80 mM K+, 2.6 microM noradrenaline (NA), or 65 nM endothelin-1 (ET-1) in Ca(2+)-free solution in SV but not in ITA. The results demonstrate a vasoinhibitory activity in vasostatin and show that there is a marked difference between the arterial and venous segments in the Ca2+ independent component of the inhibitory response. A vascular role for the N-terminal domain of CGA is indicated, presumably by inhibiting Ca2+ release from intracellular stores in the human vein but not the artery. 相似文献
609.
The chloroplast Albino3 (Alb3) protein is a chloroplast homolog of the mitochondrial Oxa1p and YidC proteins of Escherichia coli, which are essential components for integrating membrane proteins. In vitro studies in vascular plants have revealed that Alb3 is required for the integration of the light-harvesting complex protein into the thylakoid membrane. Here, we show that the gene affected in the ac29 mutant of Chlamydomonas reinhardtii is Alb3.1. The availability of the ac29 mutant has allowed us to examine the function of Alb3.1 in vivo. The loss of Alb3.1 has two major effects. First, the amount of light-harvesting complex from photosystem II (LHCII) and photosystem I (LHCI) is reduced >10-fold, and total chlorophyll represents only 30% of wild-type levels. Second, the amount of photosystem II is diminished 2-fold in light-grown cells and nearly 10-fold in dark-grown cells. The accumulation of photosystem I, the cytochrome b(6)f complex, and ATP synthase is not affected in the ac29 mutant. Mild solubilization of thylakoid membranes reveals that Alb3 forms two distinct complexes, a lower molecular mass complex of a size similar to LHC and a high molecular mass complex. A homolog of Alb3.1, Alb3.2, is present in Chlamydomonas, with 37% sequence identity and 57% sequence similarity. Based on the phenotype of ac29, these two genes appear to have mostly nonredundant functions. 相似文献
610.
Hansen M Wind T Blouse GE Christensen A Petersen HH Kjelgaard S Mathiasen L Holtet TL Andreasen PA 《The Journal of biological chemistry》2005,280(46):38424-38437
To find new principles for inhibiting serine proteases, we screened phage-displayed random peptide repertoires with urokinase-type plasminogen activator (uPA) as the target. The most frequent of the isolated phage clones contained the disulfide bridge-constrained sequence CSWRGLENHRMC, which we designated upain-1. When expressed recombinantly with a protein fusion partner, upain-1 inhibited the enzymatic activity of uPA competitively with a temperature and pH-dependent K(i), which at 25 degrees C and pH 7.4 was approximately 500 nm. At the same conditions, the equilibrium dissociation constant K(D), monitored by displacement of p-aminobenzamidine from the specificity pocket of uPA, was approximately 400 nm. By an inhibitory screen against other serine proteases, including trypsin, upain-1 was found to be highly selective for uPA. The cyclical structure of upain-1 was indispensable for uPA binding. Alanine-scanning mutagenesis identified Arg(4) of upain-1 as the P(1) residue and indicated an extended binding interaction including the specificity pocket and the 37-, 60-, and 97-loops of uPA and the P(1), P(2), P(3)', P(4)', and the P(5)' residues of upain-1. Substitution with alanine of the P(2) residue, Trp(3), converted upain-1 into a distinct, although poor, uPA substrate. Upain-1 represents a new type of uPA inhibitor that achieves selectivity by targeting uPA-specific surface loops. Most likely, the inhibitory activity depends on its cyclical structure and the unusual P(2) residue preventing the scissile bond from assuming a tetrahedral geometry and thus from undergoing hydrolysis. Peptide-derived inhibitors such as upain-1 may provide novel mechanistic information about enzyme-inhibitor interactions and alternative methodologies for designing effective protease inhibitors. 相似文献