Composition,Assembly, and Trafficking of a Wheat Xylan Synthase Complex

Xylans play an important role in plant cell wall integrity and have many industrial applications. Characterization of xylan synthase (XS) complexes responsible for the synthesis of these polymers is currently lacking. We recently purified XS activity from etiolated wheat (Triticum aestivum) seedlings. To further characterize this purified activity, we analyzed its protein composition and assembly. Proteomic analysis identified six main proteins: two glycosyltransferases (GTs) TaGT43-4 and TaGT47-13; two putative mutases (TaGT75-3 and TaGT75-4) and two non-GTs; a germin-like protein (TaGLP); and a vernalization related protein (TaVER2). Coexpression of TaGT43-4, TaGT47-13, TaGT75-3, and TaGT75-4 in Pichia pastoris confirmed that these proteins form a complex. Confocal microscopy showed that all these proteins interact in the endoplasmic reticulum (ER) but the complexes accumulate in Golgi, and TaGT43-4 acts as a scaffold protein that holds the other proteins. Furthermore, ER export of the complexes is dependent of the interaction between TaGT43-4 and TaGT47-13. Immunogold electron microscopy data support the conclusion that complex assembly occurs at specific areas of the ER before export to the Golgi. A di-Arg motif and a long sequence motif within the transmembrane domains were found conserved at the NH₂-terminal ends of TaGT43-4 and homologous proteins from diverse taxa. These conserved motifs may control the forward trafficking of the complexes and their accumulation in the Golgi. Our findings indicate that xylan synthesis in grasses may involve a new regulatory mechanism linking complex assembly with forward trafficking and provide new insights that advance our understanding of xylan biosynthesis and regulation in plants.It is believed that Golgi-localized, multiprotein complexes synthesize plant hemicellulosic polysaccharides, including xylans. Such complexes are not well characterized in plants (Zeng et al., 2010; Atmodjo et al., 2011; Chou et al., 2012), which is in sharp contrast with mammalian and yeast cells (Jungmann and Munro, 1998; McCormick et al., 2000; Giraudo et al., 2001). Xylans are the most abundant plant hemicellulosic polysaccharides on Earth and play an important role in the integrity of cell walls, which is a key factor in plant growth. Any mutations affecting xylan backbone biosynthesis seem to result in abnormal growth of plants due mostly to thinning and weakening of secondary xylem walls, described as the irregular xylem (irx) phenotype. Thus, characterizing the xylan synthase complex (XSC) would have an impact on plant improvement, as well as many industrial applications related to food, feed, and biofuel production (Yang and Wyman, 2004; Faik, 2010). Although the Arabidopsis (Arabidopsis thaliana) irx mutants have revealed the involvement of several glycosyltransferase (GT) gene families in xylan biosynthesis (Brown et al., 2007, 2009; Lee et al., 2007, 2010; Wu et al., 2009, 2010), no XSCs have been purified/isolated from Arabidopsis tissues, and we still do not know whether some of the identified Arabidopsis GTs can assemble into functional XSCs. Furthermore, if GTs do assemble into XSCs, we don’t know the mechanisms by which plant cells control their assembly and cellular trafficking. In contrast to dicots, xylan synthase activity was recently immunopurified from etiolated wheat (Triticum aestivum) microsomes (Zeng et al., 2010). This purified wheat XS activity was shown to catalyze three activities, xylan-glucuronosyltransferase (XGlcAT), xylan-xylosyltransferase (XXylT), and xylan-arabinofuranosyltranferase (XAT), which work synergistically to synthesize xylan-type polymers in vitro (Zeng et al., 2008, 2010). This work focuses on describing protein composition, assembly, and trafficking of this purified wheat XS activity.In all eukaryotes, proteins of the secretory pathway (including GTs) are synthesized in the endoplasmic reticulum (ER) and modified as they go through the Golgi cisternae. Most proteins exit the ER from ER export sites (ERESs; Hanton et al., 2009) and use a signal-based sorting mechanism that allows them to be selectively recruited into vesicles coated by coat protein II complexes (Barlowe, 2003; Beck et al., 2008). For many Golgi-resident type II membrane proteins, di-Arg motifs, such as RR, RXR, and RRR located in their cytosolic NH₂-terminal ends, have been shown to be required for their ER export (Giraudo et al., 2003; Czlapinski and Bertozzi, 2006; Schoberer et al., 2009; Tu and Banfield, 2010). Interestingly, di-Arg motifs located ∼40 amino acids from the membrane on the cytosolic side can also be used to retrieve some type II ER-resident proteins from cis-Golgi (Schutze et al., 1994; Hardt et al., 2003; Boulaflous et al., 2009). In contrast to the signal-based sorting mechanism involved in trafficking between the ER and Golgi, the steady-state localization/retention of proteins (including GTs) in the Golgi is thought to occur through vesicular cycling. Cycling is influenced by various mechanisms, including the length and composition of the transmembrane domain (TMD) of type II GTs (Bretscher and Munro, 1993; Colley, 1997; van Vliet et al., 2003; Sousa et al., 2003; Sharpe et al., 2010), and the oligomerization/aggregation of GTs (kin hypothesis), which suggests that formation of homo- or heterooligomers of GTs in the Golgi may prevent their recruitment into clathrin-coated vesicles (Machamer, 1991; Nilsson et al., 1993; Weisz et al., 1993; Cole et al., 1996). Some Golgi-resident GTs are predicted to have a cleavable NH₂-terminal secretion signal peptide (SP) and would therefore exist as soluble proteins in the Golgi lumen. To maintain their proper Golgi localization, these processed GTs are likely part of multiprotein complexes anchored to integral membrane proteins. The fact that homologs of many of the trafficking proteins from mammalian and yeast cells are found in plants indicates that trafficking machineries of the plant secretory pathway are likely conserved (d’Enfert et al., 1992; Bar-Peled and Raikhel, 1997; Batoko et al., 2000; Pimpl et al., 2000; Phillipson et al., 2001; Hawes et al., 2008).It is becoming increasingly evident that understanding the mechanisms controlling protein-protein interaction, sorting, and trafficking of polysaccharide synthases (including XSCs) will help elucidate how plants regulate cell wall synthesis and deposition during their development. To this end, we believe that the purified wheat XS activity (Zeng et al., 2010) is an excellent model for this type of study. In this work, proteomics was used to determine the protein composition of the purified XS activity. Confocal microscopy and immunogold transmission electron microscopy (TEM) were used to investigate the assembly and trafficking of the complex. Our proteomics data showed that the purified activity contains two GTs, TaGT43-4 and TaGT47-13, two putative mutases, TaGT75-3 and TaGT75-4, and two non-GT proteins: a germin-like protein (TaGLP) belonging to cupin superfamily and a protein specific to monocots annotated as wheat vernalization-related protein 2 (TaVER2). Microscopy analyses revealed that all these proteins interact in the ER, but the assembled complexes accumulate in the Golgi. Export of these complexes from the ER is controlled by the interaction between TaGT43-4 and TaGT47-13. Characterization of the wheat XSC and its trafficking furthers our understanding of xylan biosynthesis in grasses and helps elucidate how polysaccharide synthase complexes are assembled, sorted, and maintained in different compartments of the secretory pathway.     

Comparative Study of 14C-Labeled Purified Protein Derivative from Various Mycobacteria: I. Preparation of 14C-Labeled Purified Protein Derivative Antigens and Their Adsorption to Glass

Biologically active (14)C-labeled purified protein derivative ((14)C-PPD) has been prepared from the culture filtrates of seven species of mycobacteria, namely Mycobacterium tuberculosis Johnston strain (PPD), M. bovis BCG (PPD-BCG), M. avium (PPD-A), M. kansasii (PPD-Y), M. intracellulare (PPD-B), M. scrofulaceum (PPD-G), and M. fortuitum (PPD-F). These mycobacteria were grown in a culture medium containing a mixture of (14)C-labeled amino acids. The yield and specific radioactivity of the PPD, of the nucleic acid, of the bacterial cells, and of the CO(2) developed during growth have been determined for each of the seven species of mycobacteria. Although the yields of (14)C-PPD antigens differed greatly for the different species of mycobacteria tested, their specific radioactivities were similar. The (14)C-PPD antigens have been used as a means to measure their adsorption to glass. When glass ampoules containing dilute solutions (0.001 mg of PPD per ml) of these PPD antigens (PPD, PPD-BCG, PPD-A, PPD-Y, PPD-G, PPD-B, and PPD-F) were stored for 12 months at 5 C, it was found that they all adsorbed equally well to glass surfaces. In fact, regardless of the origin of the PPD, a loss due to adsorption of about 90% occurred during the first month of storage, and thereafter the PPD content remained practically constant for the rest of the duration of the storage period. The addition of 0.0005% Tween 80 to the PPD solutions effectively reduced the adsorption to glass of most PPD antigens. However, adsorption of PPD-BCG was not quite so effectively prevented, even when the Tween 80 concentration was increased from 0.0005 to 0.0005%.     

Mechanism of 3-Methylanthranilic Acid Derepression of the Tryptophan Operon in Escherichia coli

3-Methylanthranilic acid (3MA) inhibits growth and causes derepression of the tryptophan biosynthetic enzymes in wild-type strains of Escherichia coli. Previous reports attributed this effect to an inhibition of the conversion of 1-(o-carboxyphenylamino)-1-deoxyribulose 5-phosphate to indole-3-glycerol phosphate and a consequent reduction in the concentration of endogenous tryptophan. Our studies have shown that 3MA-resistant mutants linked to the tryptophan operon have a feedback-resistant anthranilate synthetase; mutants with an altered indole-3-glycerol phosphate synthetase were not found. 3MA or 7-methylindole can be metabolized to 7-methyltryptophan, and 3MA, 7-methylindole, and 7-methyltryptophan lead to derepression of the tryptophan operon. Furthermore, 3MA-resistant mutants are also resistant to 7-methylindole derepression. These results strongly suggest that the primary cause of derepression by 3MA is through its conversion to 7-methyltryptophan, which can inhibit anthranilate synthetase, thereby decreasing the concentration of endogenous tryptophan. Unlike 5- or 6-methyltryptophan, 7-methyltryptophan does not appear to function as an active corepressor.     

Evidence for plasmid-associated crystal toxin production in Bacillus thuringiensis subsp. israelensis

Three crystalliferous (Cry⁺) strains of Bacillus thuringiensis subsp. israelensis (serotype 14) that produce parasporal protein crystals toxic to dipteran larvae and several acrystalliferous (Cry^?) mutants, either induced or spontaneously derived from a single Cry⁺ parent, were examined for the presence of covalently closed circular (CCC) DNA in attempts to correlate toxin production with the presence of a specific plasmid. The plasmid profiles of both Cry⁺ and Cry^? variants were analyzed by both a cleared lysate- and a modified Eckhardt lysateelectrophoresis technique. All of the Cry^? mutants derived from the Cry⁺ parental strain had lost a 4.0- to 4.4-megadalton (Mdal) plasmid. Bioassay data confirmed loss of toxin production by the Cry^? variants. All three Cry⁺ strains, including the parent of the Cry^? strains, contained CCC plasmids DNAs of the following approximate molecular weights: 4.0 to 4.4, 5.2 to 6.0, and 11.4 to 13.0 Mdal. One Cry⁺ strain contained an additional CCC plasmid of 6.7 to 7.2 Mdal. The plasmid patterns for several Cry^? derivatives differed in other respects from the pattern for their parent strain. The various Cry⁺ and Cry^? strains could be distinguished either by phenotypical differences in antibiotic sensitivity, crystal production, and toxicity, or by differences in their plasmid profiles.     

Differential, multihormonal regulation of the mouse major urinary protein gene family in the liver.

The hormonal requirements for the regulation of the major urinary protein (MUP) mRNA levels in mouse liver have been examined. Previous experiments have shown that administration of testosterone to female or castrated male mice increases MUP mRNA levels approximately fivefold to normal male levels. We have found that thyroxine and the peptide hormone, growth hormone, each had a pronounced effect on MUP mRNA levels. MUP mRNA was reduced 150-fold in growth-hormone-deficient mutant mice (little). The administration of growth hormone and thyroxine induced MUP mRNA approximately 150-fold, and when administered together, they induced MUP mRNA approximately 1,000-fold. testosterone administration. When administered separately to these mice, growth hormone and thyroxine induced with MUP mRNA approximately 150-fold, and when administered together, they induced MUP mRNA approximately 1,000-fold. Testicular feminized mice, which lack a functional major testosterone receptor protein, can also be induced to male levels by treatment with both growth hormone and thyroxine. In addition, we present evidence which indicates that growth hormone, thyroxine, and testosterone differentially regulate the levels of distinct MUP mRNA species.     

Regulation phenomena in methanol consuming yeasts: An experiment with model discrimination

Assimilation as well as dissimilation of methanol in yeasts takes place through its oxidative intermediate formaldehyde which is several times more toxic to the growth of microorganisms than methanol itself. Still, the role of formaldehyde, produced during methanol assimilation, upon growth of yeasts is not clear. In the present paper, an attempt has been made to throw some light upon this aspect. Starting with a basic frame work for methanol uptake by yeasts, several models were developed assuming different modes of regulation of key enzymes by methanol and/or formaldehyde. The main feature of the basic framework consists in consideration of two routes for oxidation of formaldehyde to CO₂, one associated and the other not associated with production of energy. Further, the rate of energy production form the energy-associated oxidation of formaldehyde is assumed to be controlled by the rate of energy consumption by anabolic reactions. The models were discriminated by subjecting these to biological constraints. As a result, the successful model suggests that in spite of higher inherent toxicity of formaldehyde, methanol exerts the controlling influence upon growth under normal conditions.     

Functional homology between the 30S ribosomal protein S7 from E. coli K12 and S7 from E. coli MRE600

Summary It is known that the 30S protein S7 from E. coli strain MRE600 is chemically different from the S7 from E. coli strain K12 (Q13). We have reconstituted 30S subunits using S7 from MRE600 and all other molecular components from K12 and compared the functional activity of the reconstituted particles with those of the particles reconstituted using the S7 from K12. Both reconstituted particles showed the same activity in several functions tested. Since the presence of S7 is essential for the reconstitution of active 30S subunits, we conclude that the S7 from strain K12 is functionally equivalent to the S7 from strain MRE600.This is paper No. 1612 of the Laboratory of Genetics and paper XVIII in the series, Structure and Function of Bacterial Ribosomes. Papers XVI and XVII in this series are Fahnestock, Held, and Nomura (1972) and Fahnestock, Erdmann, and Nomura (1973), respectively.