Evaluation of dynamic behavior forecasting parameters in the process of transition rule induction of unidimensional cellular automata

The simulation of the dynamics of a cellular systems based on cellular automata (CA) can be computationally expensive. This is particularly true when such simulation is part of a procedure of rule induction to find suitable transition rules for the CA. Several efforts have been described in the literature to make this problem more treatable. This work presents a study about the efficiency of dynamic behavior forecasting parameters (DBFPs) used for the induction of transition rules of CA for a specific problem: the classification by the majority rule. A total of 8 DBFPs were analyzed for the 31 best-performing rules found in the literature. Some of these DBFPs were highly correlated each other, meaning they yield the same information. Also, most rules presented values of the DBFPs very close each other. An evolutionary algorithm, based on gene expression programming, was developed for finding transition rules according a given preestablished behavior. The simulation of the dynamic behavior of the CA is not used to evaluate candidate transition rules. Instead, the average values for the DBFPs were used as reference. Experiments were done using the DBFPs separately and together. In both cases, the best induced transition rules were not acceptable solutions for the desired behavior of the CA. We conclude that, although the DBFPs represent interesting aspects of the dynamic behavior of CAs, the transition rule induction process still requires the simulation of the dynamics and cannot rely only on the DBFPs.     

Pasteurella canis infection in a non-human primate black-tailed marmoset (Mico melanurus)—A case report

This study reports the pathological and microbiological findings of pneumonia in a Mico melanurus caused by Pasteurella canis, confirmed for molecular analyses. It demonstrated the importance that wild species represent in the epidemiology of pasteurellosis in anthropic environments, when inserted into urban areas.     

Hypersensitivity of Fagus sylvatica L. against leaf galling insects

Hypersensitivity is known as a localized resistance of plants against pathogens. It also can be detected in response to galling insects, i.e., in the area immediately adjacent to the site of oviposition and attempted penetration by the galling larva. This host response includes morphological and histological changes that cause the death of the attacked tissue. It is observed as a rounded dark brown halo around the gall induction site. We provide the first observation on the occurrence and possible relevance of this induced mechanism by which one of the most common tree species in Germany, Fagus sylvatica L., resists attack by two of its most common galling insects, Mikiola fagi and Hartigiola annulipes (Diptera: Cecidomyiidae). Galls induced by these cecidomyiids were extremely common in the studied area in beech forests around Darmstadt, Germany. The availability of resources (leaves on a stem) was a poor predictor of attack by the galling insects as well as for gall abundance (galls successfully formed). Hypersensitive reaction was the most important factor acting against the galling population studied. More than 77% of the attempts of the insects to induce galls on F. sylvatica resulted in failure and consequently the death of the galling larvae. Therefore, few live galls remained to be found and destroyed by natural enemies. This corroborates the view that in galling insect–host plant system interactions plant-driven factors may play a major role in determining herbivore failure and success, and perhaps the resulting community structure.     

Irradiance-driven 20-hydroxyecdysone production and morphophysiological changes in Pfaffia glomerata plants grown in vitro

Pfaffia glomerata possesses potential pharmacological and medicinal properties, mainly owing to the secondary metabolite 20-hydroxyecdysone (20E). Increasing production of biomass and 20E is important for industrial purposes. This study aimed to evaluate the influence of irradiance on plant morphology and production of 20E in P. glomerata grown in vitro. Nodal segments of accessions 22 and 43 (Ac22 and Ac43) were inoculated in culture medium containing MS salts and vitamins. Cultures were maintained at 25 ± 2 °C under a 16-h photoperiod and subjected to irradiance treatments of 65, 130, and 200 μmol m⁻² s⁻¹ by fluorescent lamps. After 30 days, growth parameters, pigment content, stomatal density, in vitro photosynthesis, metabolites content, and morphoanatomy were assessed. Notably, Ac22 plants exhibited 10-fold higher 20E production when cultivated at 200 μmol m⁻² s⁻¹ than at 65 μmol m⁻² s⁻¹, evidencing the importance of light quantity for the accumulation of this metabolite. 20E production was twice as high in Ac22 as in Ac43 plants although both accessions responded positively to higher irradiance. Growth under 200 μmol m⁻² s⁻¹ stimulated photosynthesis and consequent biomass accumulation, but lowered carotenoids and anthocyanins. Furthermore, increasing irradiance enhanced the number of palisade and spongy parenchyma cells, enhancing the overall growth of P. glomerata.

Graphical abstract

     

Metabolic engineering of Pseudomonas putida for production of vanillylamine from lignin-derived substrates

Whole-cell bioconversion of technical lignins using Pseudomonas putida strains overexpressing amine transaminases (ATAs) has the potential to become an eco-efficient route to produce phenolic amines. Here, a novel cell growth-based screening method to evaluate the in vivo activity of recombinant ATAs towards vanillylamine in P. putida KT2440 was developed. It allowed the identification of the native enzyme Pp-SpuC-II and ATA from Chromobacterium violaceum (Cv-ATA) as highly active towards vanillylamine in vivo. Overexpression of Pp-SpuC-II and Cv-ATA in the strain GN442ΔPP_2426, previously engineered for reduced vanillin assimilation, resulted in 94- and 92-fold increased specific transaminase activity, respectively. Whole-cell bioconversion of vanillin yielded 0.70 ± 0.20 mM and 0.92 ± 0.30 mM vanillylamine, for Pp-SpuC-II and Cv-ATA, respectively. Still, amine production was limited by a substantial re-assimilation of the product and formation of the by-products vanillic acid and vanillyl alcohol. Concomitant overexpression of Cv-ATA and alanine dehydrogenase from Bacillus subtilis increased the production of vanillylamine with ammonium as the only nitrogen source and a reduction in the amount of amine product re-assimilation. Identification and deletion of additional native genes encoding oxidoreductases acting on vanillin are crucial engineering targets for further improvement.     

Critical applications of Mucor circinelloides within a biorefinery context

The establishment of an efficient and feasible biorefinery model depends on, among other factors, particularly the selection of the most appropriate microorganism. Mucor circinelloides is a dimorphic fungus species able to produce a wide variety of hydrolytic enzymes, lipids prone to biodiesel production, carotenoids, ethanol, and biomass with significant nutritional value. M. circinelloides also has been selected as a model species for genetic modification by being the first filamentous oleaginous species to have its genome fully characterized, as well as being a species characterized as a potential bioremediation agent. Considering the potential of replacing several nonrenewable feedstocks is widely dependent on fossil fuels, the exploitation of microbial processes and products is a desirable solution for promoting a green and sustainable future. Here, we introduce and thoroughly describe the recent and critical applications of this remarkable fungus within the context of developing a fungal-based biorefinery.     

The oldest archosauromorph from South America: postcranial remains from the Guadalupian (mid-Permian) Rio do Rasto Formation (Paraná Basin), southern Brazil

In this contribution, we report a distal portion of a left humerus that likely belongs to an indeterminate basal archosauromorph from the Guadalupian (mid-Permian) Rio do Rastro Formation (Paraná Basin) of southern Brazil. A precise taxonomy of the fragmented and isolated humerus UFRGS-PV-0546-P is not warranted at generic nor familiar level but, likely, this specimen belongs to an Archosauromorpha due to the lack of both the entepicondylar and the ectepicondylar foramina. The narrow distal end of the humerus, the rounded radial and ulnar condyles, and the moderately developed supinator process with a shallow ectepicondylar groove (not notched) are features reminiscent of tanystropheids rather than that of other archosauromorphs. This material likely represents the first and oldest Permian archosauromorph from South America and indicates the presence of this lineage before the P/T boundary.     

Perceptions and Attitudes of Urucum Settlement Residents about Local Wildlife

This study aimed to evaluate perceptions and attitudes of local people about wild fauna and was carried out in the Urucum settlement, in the Brazilian Pantanal. We sought to: (1) identify which species of wild animals were most frequently chosen by residents of the Urucum settlement based on their familiarity; (2) identify the values associated with this fauna and the implications for conservation; and (3) test the effect of gender, age, and level of education of the residents on their attitudes. We used a structured questionnaire with open and closed questions to interview the residents. Distributions of responses about perceptions were analyzed using the chi-square test, and differences between the values associated with each species were analyzed using the Kruskal-Wallis test. The effect of gender, age, and level of education on attitudes toward the most chosen species was tested using generalized linear models (GLM). Among 61 residents interviewed, we found that the nine-banded armadillo (Dasypus novemcinctus), toucan (Ramphastos toco), monk parakeet (Myiopsitta monachus), rhea (Rhea Americana), and rattlesnake (Crotalus durissus) were the most frequently chosen species. These species were followed by tropical freshwater fish (a fish of the genus Astyanax sp.) and the blue morpho butterfly (Morpho sp.), both chosen with equal frequency. Most perceptions and attitudes were positive apart from those for the rattlesnake. Attitudes toward the rattlesnake were associated with the age of respondents, and the most common value associated with conserving the selected animals was “Anthropocentric.” As demonstrated by other studies, contact with environmental education activities could help to promote tolerance to rattlesnakes. Likewise, this tool can also broaden our understanding of the ecological importance of wild species, facilitating their conservation.