Selenium and cellular immunity

Selenium deficiency can lead to impaired immune function and reduced T-cell counts, as well as various specific disorders. Significantly, in ARC and AIDS patients, a progressive decline in plasma Se, paralleling T-cell loss, has been widely documented. Since evidence now suggests that there is an extremely high turnover of CD4+ T-cells in AIDS patients, with billions of new cells lost and replaced daily, any exceptional requirement for Se in lymphocytes could contribute to this progressive Se depletion. Thus, it may be significant that, over-lapping the known genes in the +1 reading frame, the mRNAs of several T-cell associated genes (CD4, CD8, HLA-DR p33) have open reading frames (ORFs) with as many as 10 in-frame UGA codons (CD4, p33), a clustering that is highly improbable by chance alone, and reminiscent of selenoprotein P, the predominant plasma form of Se. The presence of these ORFs, along with potential stem-loop RNA structures displaying consensus selenocysteine insertion sequences, AUG(N)_mAAA(N)_nUGR, suggests that these mRNAs may encode selenoproteins, in addition to the known T-cell glycoproteins. If so, the roles of Se in the immune system may be more diverse than previously suspected.     

Differential Impacts of Copepods and Cladocerans on Lake Seston,and Resulting Effects on Zooplankton Growth

In an enclosure study in Schöhsee, a small mesotrophic lake in Northern Germany, the impact of copepods and daphniids on the seston community was studied. In general, these two guilds differ in their feeding behaviour. Copepods actively select their food, with a preference for larger particles, whereas most cladocerans are unselective filter-feeders. In this study we investigate how the impact of the two different grazers affects zooplankton growth. We combine results obtained in the laboratory with results measured in situ in the enclosures. Copepods and cladocerans were cultured on seston from enclosures that were inhabited by density gradients of copepods or daphniids. We observed that Daphnia grew faster on seston that was pre-handled by copepods than on seston that was pre-handled by daphniids, and that somatic growth decreased with increasing densities of daphniids in the enclosures. In contrast, we observed no differences in development rates for copepods grown on the different media. The population growth rates of Daphnia in the Daphnia treatments were determined in the enclosures. Growth differences in both somatic- and population growth of Daphnia were correlated to food quality aspects of the seston. In the laboratory we found that Daphnia growth was correlated with several fatty acids. The strongest regression was with the concentration of 20:43 (r ²= 0.37). This particular fatty acid also showed the highest correlation with growth after normalisation of the fatty acids to the carbon content of the enclosures (r ²= 0.33). On the other hand, in the enclosure the population growth correlated most to the particulate nitrogen content (r ²= 0.78) and only to the N:C ratio, when normalised to carbon (r ²= 0.51).     

Structure and architecture of the maize genome

Maize (Zea mays or corn) plays many varied and important roles in society. It is not only an important experimental model plant, but also a major livestock feed crop and a significant source of industrial products such as sweeteners and ethanol. In this study we report the systematic analysis of contiguous sequences of the maize genome. We selected 100 random regions averaging 144 kb in size, representing about 0.6% of the genome, and generated a high-quality dataset for sequence analysis. This sampling contains 330 annotated genes, 91% of which are supported by expressed sequence tag data from maize and other cereal species. Genes averaged 4 kb in size with five exons, although the largest was over 59 kb with 31 exons. Gene density varied over a wide range from 0.5 to 10.7 genes per 100 kb and genes did not appear to cluster significantly. The total repetitive element content we observed (66%) was slightly higher than previous whole-genome estimates (58%-63%) and consisted almost exclusively of retroelements. The vast majority of genes can be aligned to at least one sequence read derived from gene-enrichment procedures, but only about 30% are fully covered. Our results indicate that much of the increase in genome size of maize relative to rice (Oryza sativa) and Arabidopsis (Arabidopsis thaliana) is attributable to an increase in number of both repetitive elements and genes.     

Selective mortality of a coral reef damselfish: role of predator–competitor synergisms

Phenotypic variability within cohorts of juvenile organisms can serve as the basis for selective mortality. Previous studies have demonstrated the important role that predators play in this process but not the impact of competitors on selective predation. We use a combination of lab and field studies to evaluate the effect of the presence of adult competitor damselfish (Dascyllus aruanus and Pomacentrus moluccensis; family Pomacentridae) on the selective mortality of newly-arrived (settled) lemon damselfish (P. moluccensis) by resident predator fishes (Pseudochromis fuscus Pseudochromidae and Cheilodipterus quinquelineatus Apogonidae). Lab trials consisted of mesocosm experiments in which the behaviour, mortality, and physiological condition (measured as lipid content) of surviving P. moluccensis settlers from each of three treatments: (1) predators absent, (2) predators present, and (3) predators and competitors present, were compared. The field study involved stocking newly settled P. moluccensis on natural bommies (patch reefs) which had either been subject to a partial removal of resident fish (predators and competitors) or left alone. Results indicated there was very strong condition-based selective mortality in both the lab and field trials. In both cases there was a strong positive relationship between mortality and the lipid content of surviving fish; implying low-condition fish were selectively removed. The mesocosm trials indicated that the strength of mortality as well as condition selectivity was higher when competitors were present than when they were absent. Behavioural observations in the mesocosm study suggest that attention by juvenile P. moluccensis to the movements and occasional chases of the competitors (especially D. aruanus) reduced their vigilance to the predators. These results suggest the important and interactive roles which condition of newly settled reef fish and interspecific competition can play in the outcomes of post-settlement predation. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Beak length analysis of the Southern Ocean squid Psychroteuthis glacialis (Cephalopoda: Psychroteuthidae) and its use for size and biomass estimation

A detailed analysis of beak length to body size and mass measurements was carried out for the glacial squid Psychroteuthis glacialis, which is an endemic cephalopod species in the Southern Ocean. Beak lengths (lower rostral length) were measured from 211 specimens which had been sampled in the Atlantic sector of the Southern Ocean. The basic idea was to find some calibration model in order to inter- or extrapolate missing mantle length and/or wet body mass data by means of beak lengths. The relationships between beak length and mantle length/wet body mass bear essential information for future use in biomass estimates in Southern Ocean top predators, since beaks of P. glacialis occur frequently in the stomach contents of Antarctic seabirds, seals and toothed whales. Therefore, lower rostral lengths were plotted against both mantle length and wet body mass to determine the relationship between these variables. The relationships had limited scatter and very high coefficients of determination, showing that lower rostral length is a good predictor of the squid's mantle length and wet mass. A non-linear 3rd order polynomial regression of lower rostral length against mantle length was identified as the best fitted calibration model, explaining 93% (R ²) of the associated variance. The relationship between lower rostral length and wet body mass was empirically well fitted through regressing ln-transformed values of lower rostral length against wet body mass, explaining 95% (R ²) of the associated variance. The present investigation provides measurements for a wide size range of P. glacialis individuals compared to earlier studies, which were limited on very small data sets. Accepted: 23 August 1999     

Differential effect of three-repeat and four-repeat tau on mitochondrial axonal transport

Tau protein is present in six different splice forms in the human brain and interacts with microtubules via either 3 or 4 microtubule binding repeats. An increased ratio of 3 repeat to 4 repeat isoforms is associated with neurodegeneration in inherited forms of frontotemporal dementia. Tau over-expression diminishes axonal transport in several systems, but differential effects of 3 repeat and 4 repeat isoforms have not been studied. We examined the effects of tau on mitochondrial transport and found that both 3 repeat and 4 repeat tau change normal mitochondrial distribution within the cell body and reduce mitochondrial localization to axons; 4 repeat tau has a greater effect than 3 repeat tau. Further, we observed that the 3 repeat and 4 repeat tau cause different alterations in retrograde and anterograde transport dynamics with 3 repeat tau having a slightly stronger effect on axon transport dynamics. Our results indicate that tau-induced changes in axonal transport may be an underlying theme in neurodegenerative diseases associated with isoform specific changes in tau's interaction with microtubules.     

Investigating the Signature of Aquatic Resource Use within Pleistocene Hominin Dietary Adaptations

There is general agreement that the diet of early hominins underwent dramatic changes shortly after the appearance of stone tools in the archaeological record. It is often assumed that this change is associated with dietary expansion to incorporate large mammal resources. Although other aspects of the hominin diet, such as aquatic or vegetal resources, are assumed to be a part of hominin subsistence, identifying evidence of these adaptations has proved difficult. Here we present a series of analyses that provide methodological support for the inclusion of aquatic resources in hominin dietary reconstructions. We suggest that bone surface modifications in aquatic species are morphologically distinguishable from bone surface modifications on terrestrial taxa. We relate these findings to differences that we document in the surface mechanical properties of the two types of bone, as reflected by significant differences in bone surface microhardness values between aquatic and terrestrial species. We hypothesize that the characteristics of bone surface modifications on aquatic taxa inhibit the ability of zooarchaeologists to consistently diagnose them correctly. Contingently, this difficulty influences correspondence levels between zooarchaeologists, and may therefore result in misinterpretation of the taphonomic history of early Pleistocene aquatic faunal assemblages. A blind test using aquatic specimens and a select group of 9 experienced zooarchaeologists as participants was designed to test this hypothesis. Investigation of 4 different possible explanations for blind test results suggest the dominant factors explaining patterning relate to (1) the specific methodologies employed to diagnose modifications on aquatic specimens and (2) the relative experience of participants with modifications on aquatic bone surfaces. Consequently we argue that an important component of early hominin diets may have hitherto been overlooked as a result of (a) the paucity of referential frameworks within which to identify such a component and (b) the inability of applied identification methodologies to consistently do so.