Analysis of binding properties and specificity through identification of the interface forming residues (IFR) for serine proteases <Emphasis Type="Italic">in silico</Emphasis> docked to different inhibitors

Background  

Enzymes belonging to the same super family of proteins in general operate on variety of substrates and are inhibited by wide selection of inhibitors. In this work our main objective was to expand the scope of studies that consider only the catalytic and binding pocket amino acids while analyzing enzyme specificity and instead, include a wider category which we have named the Interface Forming Residues (IFR). We were motivated to identify those amino acids with decreased accessibility to solvent after docking of different types of inhibitors to sub classes of serine proteases and then create a table (matrix) of all amino acid positions at the interface as well as their respective occupancies. Our goal is to establish a platform for analysis of the relationship between IFR characteristics and binding properties/specificity for bi-molecular complexes.     

Accumulation and dissemination of prion protein in experimental sheep scrapie in the natural host

Background  

Since 1954, there have been in excess of 800 cases of rabies as a result of European Bat Lyssaviruses types 1 and 2 (EBLV-1, EBLV-2) infection, mainly in Serotine and Myotis bats respectively. These viruses have rarely been reported to infect humans and terrestrial mammals, as the only exceptions are sheep in Denmark, a stone marten in Germany and a cat in France. The purpose of this study was to investigate the susceptibility of foxes to EBLVs using silver foxes (Vulpes vulpes) as a model.     

Contact relations and guidance of primordial germ cells on their migratory route in embryos of Xenopus laevis

This paper describes the relationship between primordial germ cells (p.g.cs) and the substrate over which they migrate in early embryos of the anuran amphibian Xenopus laevis. P.g.cs migrate from the embryonic gut to the dorsal body wall along the dorsal mesentery at the earliest swimming stage. Our earlier papers have described the way in which p.g.cs move in vitro. In this work we have studied the shape and cytoarchitecture of both p.g.cs and the coelomic epithelial cells (c.e.cs) over which they migrate. We have concentrated on three aspects of the morphology of these cells: first the shapes of the c.e.cs and the way that they affect the shapes of the p.g.cs; secondly the presence of adhesion plaques between the two types of cell; and thirdly the arrangement of cytoskeleton elements. The results show that c.e.cs in the dorsal mesentery are orientated cranio-caudally while those on the dorsal body wall and at the junction with the mesentery are arranged transversely, at 90 degrees to the cranio-caudal plane. P.g.cs are found in both elongated and rounded state. Where elongated, they are always in the same plane as the c.e.cs with which they are associated. The implications of this are discussed. Adhesion plaques between p.g.cs and c.e.cs are shown both by disaggregation studies and transmission electron microscope studies. Plaques are associated with the well defined microfilamentous cytoskeleton of c.e.cs, but only with a sparse array of filaments in p.g.cs. The only parts of p.g.cs where filaments are regularly found are their filopodia, which are generally seen on elongated p.g.cs in longitudinal section. We suggest on the basis of this work that p.g.cs have a dispersed cytoskeleton except during filopod extension, that they move by forming direct adhesion plaques with c.e.cs, and that c.e.cs provide a firm orientated support and possible guide to p.g.c. movement.     

Fatty acid correlates of temperament in adolescent boys with attention deficit hyperactivity disorder

Atypical fatty acid metabolism has been reported in attention deficit hyperactivity disorder (ADHD), however, its relationship with temperament in this population is unclear. The current study investigated the association between blood levels of fatty acids implicated in brain structure and function (omega-3, omega-6, omega-9) and personality traits of stability (neuroticism, conscientiousness and agreeableness) and plasticity (extraversion and openness). Twenty right-handed adolescent boys with ADHD completed a self-report NEO-FFI personality questionnaire, and had fatty acid content assessed from red blood using gas chromatography. Pearson's correlations showed no significant associations between omega-3 levels and personality. After correction for multiple comparisons, Adrenic Acid (C22:4n6) was inversely associated with stability. Oleic acid (C18:1n9) was positively associated with plasticity. Results are in line with a role of fatty acids in brain function. They suggest that those fatty acids that are involved in myelination (Adrenic, Oleic) have the strongest associations with temperament in adolescents with ADHD.