DDX6 recruits translational silenced human reticulocyte 15-lipoxygenase mRNA to RNP granules

Erythroid precursor cells lose the capacity for mRNA synthesis due to exclusion of the nucleus during maturation. Therefore, the stability and translation of mRNAs that code for specific proteins, which function in late stages of maturation when reticulocytes become erythrocytes, are controlled tightly. Reticulocyte 15-lipoxygenase (r15-LOX) initiates the breakdown of mitochondria in mature reticulocytes. Through the temporal restriction of mRNA translation, the synthesis of r15-LOX is prevented in premature cells. The enzyme is synthesized only in mature reticulocytes, although r15-LOX mRNA is already present in erythroid precursor cells. Translation of r15-LOX mRNA is inhibited by hnRNP K and hnRNP E1, which bind to the differentiation control element (DICE) in its 3' untranslated region (3'UTR). The hnRNP K/E1-DICE complex interferes with the joining of the 60S ribosomal subunit to the 40S subunit at the AUG. We took advantage of the inducible human erythroid K562 cell system that fully recapitulates this process to identify so far unknown factors, which are critical for DICE-dependent translational regulation. Applying RNA chromatography with the DICE as bait combined with hnRNP K immunoprecipitation, we specifically purified the DEAD-box RNA helicase 6 (DDX6) that interacts with hnRNP K and hnRNP E1 in a DICE-dependent manner. Employing RNA interference and fluorescence in situ hybridization, we show that DDX6 colocalizes with endogenous human (h)r15-LOX mRNA to P-body-like RNP granules, from which 60S ribosomal subunits are excluded. Our data suggest that in premature erythroid cells translational silencing of hr15-LOX mRNA is maintained by DDX6 mediated storage in these RNP granules.     

Arginine methylation in subunits of mammalian pre-mRNA cleavage factor I

Mammalian cleavage factor I (CF I_m) is composed of two polypeptides of 25 kDa and either a 59 or 68 kDa subunit (CF I_m25, CF I_m59, CF I_m68). It is part of the cleavage and polyadenylation complex responsible for processing the 3′ ends of messenger RNA precursors. To investigate post-translational modifications in factors of the 3′ processing complex, we systematically searched for enzymes that modify arginines by the addition of methyl groups. Protein arginine methyltransferases (PRMTs) are such enzymes that transfer methyl groups from S-adenosyl methionine to arginine residues within polypeptide chains resulting in mono- or dimethylated arginines. We found that CF I_m68 and the nuclear poly(A) binding protein 1 (PABPN1) were methylated by HeLa cell extracts in vitro. By fractionation of these extracts followed by mass spectral analysis, we could demonstrate that the catalytic subunit PRMT5, together with its cofactor WD45, could symmetrically dimethylate CF I_m68, whereas pICln, the third polypeptide of the complex, was stimulatory. As sites of methylation in CF I_m68 we could exclusively identify arginines in a GGRGRGRF or “GAR” motif that is conserved in vertebrates. Further in vitro assays revealed a second methyltransferase, PRMT1, which modifies CF I_m68 by asymmetric dimethylation of the GAR motif and also weakly methylates the C-termini of both CF I_m59 and CF I_m68. The results suggest that native—as compared with recombinant—protein substrates may contain additional determinants for methylation by specific PRMTs. A possible involvement of CF I_m methylation in the context of RNA export is discussed.     

1,4,9,10-Anthradiquinone as precursor for antitumor compounds

1,4,9,10-Anthradiquinone 5 was reacted with enamines 6 in the Nenitzescu reaction to yield unexpected 3,3a,6,12-tetrahydro-3a,7-dihydroxy-2-methyl-6,12-dioxo-naphtho[2,3-d]indol-1-carboxylates 8A. However, anthracycline-like naphtho-condensed 5-hydroxyindoles were not obtained from this diquinone. It yielded similar reaction products of the Nenitzescu reaction like other quinones activated by two electron-withdrawing groups. Furthermore, these new compounds 8A were found to constitute precursors for the synthesis of azonines. The conversion to dibenzoazonines 13 occurred in an unusual and up to now unknown way consisting of isomerization, ring opening, and re-closure. 2-Chloro-anthradiquinone 19 reacted with enamines 6 as vinylogeous acid chloride to pyrroloanthraquinone 20. No substitution of chlorine was observed. Naphtho-condensed indoles 26 were obtained by the reactions of unsubstituted 1,4-anthraquinone 25 with enamines 6 via the normal Nenitzescu route. Indoles 26 were converted to Mannich bases, reacting further to dimers by the Diels-Alder reaction of intermediate o-quinone methides. Most of the synthesized heterocycles were evaluated for their anticancer properties in the NCI's human-disease oriented in vitro anticancer screen. Particularly, carbinolamines 8A exhibited inhibitory activity of tumor cell growth and thus they constitute a new class of lead structures for anticancer drug design.     

Secreted Fungal Effector Lipase Releases Free Fatty Acids to Inhibit Innate Immunity-Related Callose Formation during Wheat Head Infection

The deposition of the (1,3)-β-glucan cell wall polymer callose at sites of attempted penetration is a common plant defense response to intruding pathogens and part of the plant’s innate immunity. Infection of the Fusarium graminearum disruption mutant Δfgl1, which lacks the effector lipase FGL1, is restricted to inoculated wheat (Triticum aestivum) spikelets, whereas the wild-type strain colonized the whole wheat spike. Our studies here were aimed at analyzing the role of FGL1 in establishing full F. graminearum virulence. Confocal laser-scanning microscopy revealed that the Δfgl1 mutant strongly induced the deposition of spot-like callose patches in vascular bundles of directly inoculated spikelets, while these callose deposits were not observed in infections by the wild type. Elevated concentrations of the polyunsaturated free fatty acids (FFAs) linoleic and α-linolenic acid, which we detected in F. graminearum wild type-infected wheat spike tissue compared with Δfgl1-infected tissue, provided clear evidence for a suggested function of FGL1 in suppressing callose biosynthesis. These FFAs not only inhibited plant callose biosynthesis in vitro and in planta but also partially restored virulence to the Δfgl1 mutant when applied during infection of wheat spikelets. Additional FFA analysis confirmed that the purified effector lipase FGL1 was sufficient to release linoleic and α-linolenic acids from wheat spike tissue. We concluded that these two FFAs have a major function in the suppression of the innate immunity-related callose biosynthesis and, hence, the progress of F. graminearum wheat infection.The molecular and physiological regulation of the biosynthesis of callose, which is a (1,3)-β-glucan polymer with some (1,6)-branches (Aspinall and Kessler, 1957), and its importance for plant development as well as plant defense are still under examination. Regarding the involvement of callose in plant defense responses, particular attention has been focused on the formation of cell wall thickenings in plants, so-called papillae, at sites of microbial attack. They were already described 150 years ago (deBary, 1863) and reported to commonly contain callose (Mangin, 1895). Since then, examinations have identified callose as the most abundant chemical constituent in papillae, which may also include proteins (e.g. peroxidases and antimicrobial thionins), phenolics, and other constituents (Aist and Williams, 1971; Sherwood and Vance, 1976; Mims et al., 2000). Papillae have been regarded as an early defense reaction that may not completely stop the pathogen; rather, they have been considered to act as a physical barrier to slow pathogen invasion (Stone and Clarke, 1992; Voigt and Somerville, 2009) and to contribute to the plant’s innate immunity (Jones and Dangl, 2006; Schwessinger and Ronald, 2012). The host plant can gain time to initiate defense reactions that require gene activation and expression, such as the hypersensitive reactions, phytoalexin production, and pathogenesis-related protein synthesis (Lamb and Dixon, 1997; Brown et al., 1998). However, our recent study revealed that callose can also act as a barrier that completely prevents fungal penetration. The overexpression of POWDERY MILDEW RESISTANT4 (PMR4), a gene encoding a stress-induced callose synthase, resulted in early elevated callose deposition at sites of attempted powdery mildew penetration in Arabidopsis (Arabidopsis thaliana; Ellinger et al., 2013). Interestingly, the pmr4 deletion mutant also showed an increased resistance to powdery mildew that, however, was induced at later stages of powdery mildew infection because an initial fungal penetration still occurred. In fact, the absence of the functional callose synthase PMR4 in the pmr4 mutant resulted in papillae that were free from callose but also induced a hyperactivation of the salicylic acid defense pathway, which was shown to be the basis of resistance in double mutant and microarray analyses (Jacobs et al., 2003; Nishimura et al., 2003). The callose synthase gene PMR4 from Arabidopsis belongs to the GLUCAN SYNTHASE-LIKE (GSL) family, genes that have been identified in higher plants including wheat (Triticum aestivum; Cui et al., 2001; Doblin et al., 2001; Hong et al., 2001; Østergaard et al., 2002; Voigt et al., 2006). The predicted function of these genes as callose synthases is generally supported by homology with the yeast FK506 SENSITIVITY (FKS) genes, which are believed to be subunits of (1,3)-β-glucan synthase complexes (Douglas et al., 1994; Dijkgraaf et al., 2002). Additionally, the predicted proteins encoded by the GSL genes correlate with the approximately 200-kD catalytic subunit of putative callose synthases. Li et al. (2003) showed that the amino acid sequence predicted from a GSL gene in barley (Hordeum vulgare; HvGSL1) correlates with the amino acid sequence of an active (1,3)-β-glucan synthase fraction.In this study, we aimed to examine the involvement of callose synthesis and callose deposition in plant defense against intruding fungal pathogens in the pathosystem wheat-Fusarium graminearum. We focused on the ability of wheat to inhibit a further spread of fungal pathogens after an initial, successful infection. This resistance to fungal spread within the host has been referred to as type II resistance and is part of a widely accepted two-component system of resistance, which includes type I resistance operating against initial infection (Schroeder and Christensen, 1963). For our analyses, we used the direct interaction between wheat as host and F. graminearum as a pathogen. On the one hand, Fusarium head blight (FHB) of wheat, caused by F. graminearum, is one of the most destructive crop diseases worldwide (McMullen et al., 1997; del Blanco et al., 2003; Madgwick et al., 2011) and classifies this fungus as a top 10 plant pathogen based on its importance in science and agriculture (Dean et al., 2012). On the other hand, only a limited number of wheat cultivars were identified that revealed FHB resistance. However, these cultivars did not qualify for commercial cultivation or breeding approaches due to inappropriate agronomic traits (Buerstmayr et al., 2009). Further elucidation of the mechanisms of spreading resistance could support the generation of FHB-resistant wheat cultivars.In this regard, we demonstrated that the secreted lipase FGL1 of F. graminearum is a virulence factor required for wheat infection (Voigt et al., 2005). A strong resistance to fungal spread was observed in a susceptible wheat cultivar after infection with the lipase-deficient F. graminearum strain Δfgl1. Light microscopy indicated barrier formation in the transition zone of rachilla and rachis of directly inoculated spikelets. In contrast, neither spreading resistance nor barrier formation was observed during F. graminearum wild type infection. An active role of lipases in establishing full virulence was also recently proposed for the plant pathogen Fusarium oxysporum f. sp. lycopersici, where reduced lipolytic activity due to the deletion of lipase regulatory genes resulted in reduced colonization of tomato (Solanum lycopersicum) plants (Bravo-Ruiz et al., 2013). Because the expression of the lipase-encoding gene LIP1 was induced in the biotrophic fungus Blumeria graminis during early stages of infection (Feng et al., 2009) and disruption of the putative secreted lipase gene lipA resulted in reduced virulence of the bacterial plant pathogen Xanthomonas campestris (Tamir-Ariel et al., 2012), a general importance of extracellular lipolytic activity during plant colonization is indicated.We evaluated a possible role of callose in plant defense by infecting wheat spikes with the virulent fungal pathogen F. graminearum wild type, the virulence-deficient F. graminearum deletion mutant Δfgl1, and the barley leaf pathogen Pyrenophora teres, the latter intended to induce strong plant defense responses as known from incompatible, nonhost interactions. The formation of callose plugs within the vascular bundles of inoculated spikelets and the callose synthase activity of infected spikelet tissue correlated directly with increased plant resistance. Subsequent analyses of free fatty acid (FFA) concentrations revealed that those polyunsaturated FFAs were enriched during wheat infection with the F. graminearum wild-type strain that could inhibit callose synthase activity in vitro as well as in planta and partially restored the virulence of the lipase-deficient F. graminearum strain Δfgl1. On the basis of these results, we propose a model for FHB where defense-related callose synthase is inhibited by specific FFAs whose accumulation is caused by the fungus during fungal infection; this inhibition is required for full infection of the wheat head.     

Analysis of bymovirus resistance genes on proximal barley chromosome 4HL provides the basis for precision breeding for BaMMV/BaYMV resistance

Key message

Unlocking allelic diversity of the bymovirus resistance gene rym11 located on proximal barley chromosome 4HL and diagnostic markers provides the basis for precision breeding for BaMMV/BaYMV resistance.

Abstract

The recessive resistance gene rym11 on barley chromosome 4HL confers broad-spectrum and complete resistance to all virulent European isolates of Barley mild mosaic virus and Barley yellow mosaic virus (BaMMV/BaYMV). As previously reported, rym11-based resistance is conferred by a series of alleles of naturally occurring deletions in the gene HvPDIL5-1, encoding a protein disulfide isomerase-like protein. Here, a novel resistance-conferring allele of rym11 is reported that, in contrast to previously identified resistance-conferring variants of the gene HvPDIL5-1, carries a single non-synonymous amino acid substitution. Allelism was confirmed by crossing to genotypes carrying previously known rym11 alleles. Crossing rym11 genotypes with a cultivar carrying the recessive resistance gene rym1, which was reported to reside on the same chromosome arm 4HL like rym11, revealed allelism of both loci. This allelic state was confirmed by re-sequencing HvPDIL5-1 in the rym1 genotype, detecting the haplotype of the rym11-d allele. Diagnostic PCR-based markers were established to differentiate all seven resistance-conferring alleles of the rym11 locus providing precise tools for marker-assisted selection (MAS) of rym11 in barley breeding.     

Müller glial cell-provided cellular light guidance through the vital guinea-pig retina

In vertebrate eyes, images are projected onto an inverted retina where light passes all retinal layers on its way to the photoreceptor cells. Light scattering within this tissue should impair vision. We show that radial glial (Müller) cells in the living retina minimize intraretinal light scatter and conserve the diameter of a beam that hits a single Müller cell endfoot. Thus, light arrives at individual photoreceptors with high intensity. This leads to an optimized signal/noise ratio, which increases visual sensitivity and contrast. Moreover, we show that the ratio between Müller cells and cones-responsible for acute vision-is roughly 1. This suggests that high spatiotemporal resolution may be achieved by each cone receiving its part of the image via its individual Müller cell-light guide.     

Identification of key amino acid residues that determine the ability of high risk HPV16-E7 to dysregulate major histocompatibility complex class I expression

High risk human Papillomavirus (HPV) types are the major causative agents of cervical cancer. Reduced expression of major histocompatibility complex class I (MHC I) on HPV-infected cells might be responsible for insufficient T cell response and contribute to HPV-associated malignancy. The viral gene product required for subversion of MHC I synthesis is the E7 oncoprotein. Although it has been suggested that high and low risk HPVs diverge in their ability to dysregulate MHC I expression, it is not known what sequence determinants of HPV-E7 are responsible for this important functional difference. To investigate this, we analyzed the capability to affect MHC I of a set of chimeric E7 variants containing sequence elements from either high risk HPV16 or low risk HPV11. HPV16-E7, but not HPV11-E7, causes significant diminution of mRNA synthesis and surface presentation of MHC I, which depend on histone deacetylase activity. Our experiments demonstrate that the C-terminal region within the zinc finger domain of HPV-E7 is responsible for the contrasting effects of HPV11- and HPV16-E7 on MHC I. By using different loss- and gain-of-function mutants of HPV11- and HPV16-E7, we identify for the first time a residue variation at position 88 that is highly critical for HPV16-E7-mediated suppression of MHC I. Furthermore, our studies suggest that residues at position 78, 80, and 88 build a minimal functional unit within HPV16-E7 required for binding and histone deacetylase recruitment to the MHC I promoter. Taken together, our data provide new insights into how high risk HPV16-E7 dysregulates MHC I for immune evasion.     

Pyramiding of <Emphasis Type="Italic">Ryd2</Emphasis> and <Emphasis Type="Italic">Ryd3</Emphasis> conferring tolerance to a German isolate of <Emphasis Type="Italic">Barley yellow dwarf virus</Emphasis>-PAV (BYDV-PAV-ASL-1) leads to quantitative resistance against this isolate

Barley yellow dwarf virus (BYDV) is an economically important pathogen of barley, which may become even more important due to global warming. In barley, several loci conferring tolerance to BYDV-PAV-ASL-1 are known, e.g. Ryd2, Ryd3 and a quantitative trait locus (QTL) on chromosome 2H. The aim of the present study was to get information whether the level of tolerance against this isolate of BYDV in barley can be improved by combining these loci. Therefore, a winter and a spring barley population of doubled haploid (DH) lines were genotyped by molecular markers for the presence of the susceptibility or the resistance encoding allele at respective loci (Ryd2, Ryd3, QTL on chromosome 2H) and were tested for their level of BYDV-tolerance after inoculation with viruliferous (BYDV-PAV-ASL-1) aphids in field trials. In DH-lines carrying the combination Ryd2 and Ryd3, a significant reduction of the virus titre was detected as compared to lines carrying only one of these genes. Furthermore, spring barley DH-lines with this allele combination also showed a significantly higher relative grain yield as compared to lines carrying only Ryd2 or Ryd3. The QTL on chromosome 2H had only a small effect on the level of tolerance in those lines carrying only Ryd2, or Ryd3 or a combination of both, but the effect in comparison to lines carrying no tolerance allele was significant. Overall, these results show that the combination of Ryd2 and Ryd3 leads to quantitative resistance against BYDV-PAV instead of tolerance.     

Neurologic and ocular phenotype in Pitt–Hopkins syndrome and a zebrafish model

In this study, we performed an in-depth analysis of the neurologic and ophthalmologic phenotype in a patient with Pitt–Hopkins syndrome (PTHS), a disorder characterized by severe mental and motor retardation, carrying a uniallelic TCF4 deletion, and studied a zebrafish model. The PTHS-patient was characterized by high-resolution magnetic resonance imaging (MRI) with diffusion tensor imaging to analyze the brain structurally, spectral-domain optical coherence tomography to visualize the retinal layers, and electroretinography to evaluate retinal function. A zebrafish model was generated by knockdown of tcf4-function by injection of morpholino antisense oligos into zebrafish embryos and the morphant phenotype was characterized for expression of neural differentiation genes neurog1, ascl1b, pax6a, zic1, atoh1a, atoh2b. Data from PTHS-patient and zebrafish morphants were compared. While a cerebral MRI-scan showed markedly delayed myelination and ventriculomegaly in the 1-year-old PTHS-patient, no structural cerebral anomalies including no white matter tract alterations were detected at 9 years of age. Structural ocular examinations showed highly myopic eyes and an increase in ocular length, while retinal layers were normal. Knockdown of tcf4-function in zebrafish embryos resulted in a developmental delay or defects in terminal differentiation of brain and eyes, small eyes with a relative increase in ocular length and an enlargement of the hindbrain ventricle. In summary, tcf4-knockdown in zebrafish embryos does not seem to affect early neural patterning and regionalization of the forebrain, but may be involved in later aspects of neurogenesis and differentiation. We provide evidence for a role of TCF4/E2-2 in ocular growth control in PTHS-patients and the zebrafish model.