Oligonucleotide probes for genus-, species- and subspecies-specific identification of representatives of the genus Proteus

The presence of conserved and variable regions in the 16S ribosomal RNA (rRNA) allows construction of oligonucleotide probes complementary to defined regions of this molecule. In this paper we apply such probes to identify members of Enterobacteriaceae, specifically closely related species of Proteus. Genus- and species-specific detection of Proteus sp. was done by dot-blotting, subspecies identification by Southern hybridization. Synthetic oligodeoxynucleotides, 24 to 29 bases in length, detected less than 10³ bacteria in DNA/RNA dot-blots. Due to the favorable reaction kinetics, hybridization and washing times could be reduced to 15–20 min and 2–3 min, respectively. Sample preparation was critical, especially in the case of sputum specimens which were solubilized prior to RNA extraction. To prevent degradation of rRNA by the endogenous nuclease activity, the material was applied immediately to the filters. Otherwise, up to 1000-fold reduction in the hybridization signal was observed.     

Inosine Mediates the Protective Effect of Adenosine in Rat Astrocyte Cultures Subjected to Combined Glucose-Oxygen Deprivation

Abstract: Preliminary evidence suggests adenosine, a neuromodulator, has neuroprotective properties during cerebral ischemia. It is unclear, however, if adenosine has glioprotective effects. We studied the effect of adenosine on cellular injury in astroglial cultures subjected to combined glucose-oxygen deprivation. Adenosine (100–1,000 µ M ) dramatically reduced astroglial injury, whereas the adenosine agonists 2-chloroadenosine (10 n M –100 µ M ), N ⁶-cyclopentyladenosine (1 n M –10 µ M ), 5'- N -ethylcarboxamidoadenosine (10 n M –100 µ M ), and N ⁶-2-(4-aminophenyl)ethyladenosine (10 n M –100 µ M ) had no effect. Furthermore, the adenosine antagonists 8-cyclopentyl-1,3-dipropylxanthine (1 n M –1 µ M ), xanthine amine congener (10 n M –10 µ M ), and 8-( p -sulfophenyl)-theophylline (10–300 µ M ) failed to reverse the protective effect of 200 µ M adenosine. Next, adenosine degradation products were studied. Inosine proved to be glioprotective at concentrations nearly identical to those of adenosine, but hypoxanthine and ribose had no effect. The protective effect of 200 µ M inosine was not reversed by 8-( p -sulfophenyl)theophylline (10–300 µ M ). Adenosine deaminase (1 unit/ml) had no effect on protection produced by adenosine, whereas erythro -9-(2-hydroxy-3-nonyl)adenine hydrochloride (10 µ M ) reversed the protective effect of adenosine. Dipyridamole (4 µ M ) inhibited the protective effect of both adenosine and inosine. We conclude that adenosine dramatically decreases astroglial injury during combined glucose-oxygen deprivation and that this protective effect appears to be mediated by inosine.     

The performance of fungal xylan-degrading enzyme preparations in elemental chlorine-free bleaching for Eucalyptus pulp

Cellulase-free xylan-degrading enzyme preparations from Acrophialophora nainiana, Humicola grisea var. thermoidea and two Trichoderma harzianum strains were used as bleaching agents for Eucalyptus kraft pulp, prior to a chlorine dioxide and alkaline bleaching sequence. In comparison to the control sequence (performed without xylanase pretreatment), the sequence incorporating enzyme treatment was more effective. Removal of residual lignin was indicated by a reduction in kappa number. Overall, enzyme preparations from T. harzianum were marginally more effective in reducing pulp viscosity and chlorine chemical consumption and improving the brightness of the kraft pulp. However, the highest reduction in pulp viscosity was mediated by the xylanase preparation from A. nainiana. Xylanase pretreatment compares very favorably with that of chemical pulping. Journal of Industrial Microbiology & Biotechnology (2002) 28, 204–206 DOI: 10.1038/sj/jim/7000227 Received 27 April 2001/ Accepted in revised form 03 November 2001     

Development of models for specific crop calendar events

In order to test growth prediction and yield prediction equations on historical weather data for areas where planting dates were not published, or for areas where dates of planting will not be as readily accessible as weather data, there is a need for a model to predict the date of planting. Such a model was developed by regressing reported percentages of the wheat crop planted on various weather variables and their transformations. The model for predicting percentage of wheat acreage planted in North Dakota was tested on data not used in formulating the coefficients of the model. Although the predictions may have errors of several days the model is considered to be an improvement over a system utilizing a constant year-to-year average planting date.The research was supported by funds supplied by the National Aeronautics and Space Administration under contract No. NAS 9-14006.Presented at the Seventh International Biometeorological Congress, 17–23 August 1975, College Park, Maryland, USA.     

Community regulation by herbivore parasitism and density: Trait-mediated indirect interactions in the intertidal

The abundant herbivorous mud-snail Hydrobia ulvae is an ecosystem engineer in soft-bottom intertidal habitats due to its grazing and bioturbation activity. However, mud snails are commonly infected by trematodes that reduce their overall activity, which in turn may affect their impact on the surrounding benthic community. To test this hypothesis, we performed field experiments manipulating both the abundance of uninfected snails (0, 7500 and 15.000 ind. m^- 2) and the level of snail parasitism (0, 33 and 100% trematode prevalence) on a Danish mud-flat. The results showed that increasing snail abundance and parasitism generally had opposite effects on the community of microphytobenthos and zoobenthos. Increasing snail density increased the chlorophyll-a concentration in the substrate (enhancement), whereas increasing parasitism decreased it. In accordance, the benthic primary producers were generally less nutrient limited at high snail density and mostly so at high levels of snail parasitism. Moreover, epipsammic diatoms were favoured over epipelic diatoms at increasing snail density, whereas the opposite was evident at increasing snail parasitism. At the community level, increasing snail density increased evenness among epipelic diatoms, whereas increasing snail parasitism decreased evenness and species diversity. Probably through the action of trophic cascades and varying levels of disturbance, the zoobenthic community was influenced by experimental treatments as well. The indirect effects of snail parasitism influenced significantly the abundance of more faunal species (seven) than did snail density (two). At the community level, increasing snail density decreased evenness and lowest species richness coincided with intermediate snail density. In contrast, increasing snail parasitism resulted in increasing evenness and peaking species richness at intermediate level of parasitism. Together, the results show that parasites solely through their impact on the behaviour of a single community member can be significant indirect determinants of community organisation and function.     

A killer appetite: metabolic consequences of carnivory in marine mammals

Among terrestrial mammals, the morphology of the gastrointestinal tract reflects the metabolic demands of the animal and individual requirements for processing, distributing, and absorbing nutrients. To determine if gastrointestinal tract morphology is similarly correlated with metabolic requirements in marine mammals, we examined the relationship between basal metabolic rate (BMR) and small intestinal length in pinnipeds and cetaceans. Oxygen consumption was measured for resting bottlenose dolphins and Weddell seals, and the results combined with data for four additional species of carnivorous marine mammal. Data for small intestinal length were obtained from previously published reports. Similar analyses were conducted for five species of carnivorous terrestrial mammal, for which BMR and intestinal length were known. The results indicate that the BMRs of Weddell seals and dolphins resting on the water surface are 1.6 and 2.3 times the predicted levels for similarly sized domestic terrestrial mammals, respectively. Small intestinal lengths for carnivorous marine mammals depend on body size and are comparatively longer than those of terrestrial carnivores. The relationship between basal metabolic rate (kcal day(-1)) and small intestinal length (m) for both marine and terrestrial carnivores was, BMR=142.5 intestinal length(1.20) (r(2)=0.83). We suggest that elevated metabolic rates among marine mammal carnivores are associated with comparatively large alimentary tracts that are presumably required for supporting the energetic demands of an aquatic lifestyle and for feeding on vertebrate and invertebrate prey.     

Evolutionary psychology of spatial representations in the hominidae

Comparatively little is known about the inherited primate background underlying human cognition, the human cognitive "wild-type." Yet it is possible to trace the evolution of human cognitive abilities and tendencies by contrasting the skills of our nearest cousins, not just chimpanzees, but all the extant great apes, thus showing what we are likely to have inherited from the common ancestor. By looking at human infants early in cognitive development, we can also obtain insights into native cognitive biases in our species. Here, we focus on spatial memory, a central cognitive domain. We show, first, that all nonhuman great apes and 1-year-old human infants exhibit a preference for place over feature strategies for spatial memory. This suggests the common ancestor of all great apes had the same preference. We then examine 3-year-old human children and find that this preference reverses. Thus, the continuity between our species and the other great apes is masked early in human ontogeny. These findings, based on both phylogenetic and ontogenetic contrasts, open up the prospect of a systematic evolutionary psychology resting upon the cladistics of cognitive preferences.     

Calf thymus high mobility group proteins are nonenzymatically glycated but not significantly glycosylated

Over the past decade, there have been many reports suggesting the presence of complex carbohydrates on nuclear and cytoplasmic proteins in mammalian cells. Some of the most often cited of these reports deal with the glycosylation of the high mobility group (HMG) proteins. These are relatively abundant chromosomal proteins that are known to be associated with nucleosomes and actively transcribed regions of chromatin. The original report describing HMG protein glycosylation presented several lines of evidence suggesting that these proteins are glycosylated, including carbohydrate compositional analysis and periodic-acid Schiff staining. We have attempted to repeat these observations with more highly purified protein than was utilized in the original study. Using carbohydrate compositional analysis performed by high pH anion exchange chromatography coupled to pulsed-amperometric detection, we saw no evidence for significant glycosylation of these proteins. In addition, we found no evidence for the presence of O- GlcNAc, a well known form of nuclear glycosylation. The HMG proteins did react with periodate, suggesting the presence of a modification containing cis-diols on the protein. Several tryptic peptides isolated from HMG 14 and 17 which retained the periodate reactivity had in common lysine residues, suggesting a potential modification of the straightepsilon-amino groups of lysines such as nonenzymatic glycation. Western blot analysis of the HMG proteins using anti-advanced glycation endproducts (AGE) antibodies confirmed the presence of glycation products on the HMG proteins.