Replication of kinetoplast DNA maxicircles

The kinetoplast DNA of Crithidia fasciculata is a massive network composed of thousands of topologically interlocked circles. Most of these circles are minicircles (2.5 kb), and about 50 are maxicircles (37 kb). Previous studies showed that minicircles replicate, after release from the network, via Cairns (theta) intermediates. Here we show that maxicircles replicate, while attached to the network, by an entirely different mechanism involving rolling circle intermediates. After the network-bound maxicircle has finished replication, the branch of the rolling circle is apparently cleaved off to form a linear free maxicircle. A restriction map of the linearized free maxicircles shows that these molecules have unique termini, one of which presumably corresponds to the replication origin.     

Scale dependent effects of predatory fish on stream benthos

In open predation experiments the effects of predators on prey densities can be influenced by predator consumption and by prey movements in to and out of experimental arenas. A published model predicts that the predator effects observed in such experiments are scale dependent over the scale range where there is a transition from movement control (of prey densities) to consumption control. The scale dependence follows from the assumption that per capita rate of emigration out of an experimental arena decreases with increasing arena size.
To test this model the effects of a small benthic fish ( Cottus gobio ) on densities of stream invertebrates was investigated in instream channels of different length (0.5, 2 and 8 m). The effect of fish predation was scale dependent for four prey taxa. For three of these taxa predator effects increased with experimental scale, which is in agreement with model predictions. However, this proved to be a case of "making the right prediction for the wrong reason" as the basic assumption of scale dependent emigration rate was not upheld. By analyzing the behaviour of the model, parameterized with emigration and consumption rates observed in the experimental channels, it was found that observed scale effects occurred because prey emigration in response to the predator treatment was modified by the experimental scale. Further analysis of the parameterized model suggested that the densities of most prey taxa were controlled by prey movements and not by consumption by the sculpins.     

The Impacts of Introduced Poeciliid Fish and Odonata on the Endemic Megalagrion (Odonata) Damselflies of Oahu Island, Hawaii

Since the beginning of this century there have been substantial declines in the distribution and abundance of native Megalagrion damselflies on the Hawaiian Island of Oahu. Native damselflies have also vanished from most low elevation areas on other Hawaiian Islands, although historically, lotic and wetland dwelling damselfly species were once common throughout the archipelago. It is hypothesized that poeciliid fish introduced for biological control have caused the decline of four stream-breeding damselfly species on Oahu, and the extinction or near-extinction of two other species in Hawaii. This study documents the presence of remnant Megalagrion populations in Oahu streams, wetlands and estuaries, and records the elevational distributions of introduced fish in each waterbody surveyed. The distributions of introduced Odonata are also recorded, because the seven species of damselflies and dragonflies introduced to Oahu since 1936 present another potential threat to native Hawaiian damselflies. Native damselfly and introduced poeciliid fish distributions were mutually exclusive on Oahu, and it is concluded that this is probably due to predation by the introduced fish. By contrast, even the rarest native Megalagrion damselflies were found in areas containing introduced damselflies and dragonflies.     

Prevalence of three mutations in the Gs alpha gene among 24 families with pseudohypoparathyroidism type Ia.

Pseudohypoparathyroidism type Ia (PHP-Ia), an inherited multi-hormone resistance syndrome, is associated with deficient cellular activity of the alpha-subunit of the guanine nucleotide-binding protein (Gs alpha) that stimulates adenylyl cyclase. We determined prevalence of three recently described mutations in exons 1 and 10 of the Gs alpha gene among 24 unrelated patients with PHP-Ia. Restriction analysis was used to detect two mutations that produce unique RFLPs, and allele-specific oligonucleotide hybridization was used to detect the other mutation. As none of these mutations were not found, genomic DNA was analyzed with denaturing gradient gel electrophoresis to screen for other mutations in exon 10. Mutations of the initiation codon and exon 10 in the Gs alpha gene thus rarely (< or = 4% each) cause PHP-Ia and the Gs alpha gene mutations causing PHP-Ia are heterogeneous and unique to each pedigree.     

Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data

Background  

In practice many biological time series measurements, including gene microarrays, are conducted at time points that seem to be interesting in the biologist's opinion and not necessarily at fixed time intervals. In many circumstances we are interested in finding targets that are expressed periodically. To tackle the problems of uneven sampling and unknown type of noise in periodicity detection, we propose to use robust regression.     

Uptake and distribution of radioiodine, and the effect of ambient nitrate, in some fish species

125I uptake by the thyroid was most pronounced in the smelt (Osmerus eperlanus), perch (Perca fluviatilis), rainbow trout (Salmo gairdneri), roach (Rutilus rutilus) and bleak (Alburnus alburnus). Unlike other tissues, only the muscle in the species studied no relative accumulation of 125I as compared to the ambient water. The Crusian carp (Cyprinus carassius) indicated the lowest levels of accumulation of 125I among the species tested. Thyroid radioiodine concentration was independent of the length of the fish in the rainbow trout and perch. In the rainbow trout, however, the liver and muscle radioiodine concentrations decreased significantly with increasing length of the fish. Exposure of rainbow trout to water containing supranormal concentration of nitrate (1500 micrograms/l) resulted in lowered 125I uptake. The same phenomenon was observed for the perch and Crusian carp, with low nitrate concentrations, while with higher nitrate concentrations, the uptake levels were again increased. Thyroid function, as judged from the conversion ratio and T/S ratio, was not affected by nitrate.     

Effects of hydropower-induced flow perturbations on mayfly (Ephemeroptera) richness and abundance in north Swedish river rapids

Mayfly species richness and abundance were investigated at 52 Swedish river rapids. These were either unregulated, or regulated with or without reduced discharge. Sites impacted by regulation had lower mayfly richness and abundances than unregulated reference sites. The relative importance of reduced discharge, daily fluctuations in flow, flow constancy, and the distance to nearest rapid (as a measure of isolation) was evaluated in multiple regression analyses. These indicated negative effects of diel fluctuations on both abundance and richness, whereas flow constancy was favourable for richness. Neither the distance to nearest rapid nor reduced flow were significantly related to mayfly richness and abundance. In total, 26 mayfly species were recorded. Only Baetis rhodani was found at all sites, but another five species were present at more than 40 sites. The strongest effects were found for species within the Heptageniidae. Nineteen of 20 mayfly species present in both the regulated (with unreduced flow) and unregulated reference rapids were on average more common in the unregulated ones. Mayfly assemblage structure was primarily influenced by regional factors and nutrient status, although daily fluctuations in flow together with rapids dimensions also had a significant influence. No rare species appears to be threatened by hydropower regulation though it is conceivable that depressed abundances in regulated rivers indirectly influence predators and periphyton.