Relationships between stream macroinvertebrates and environmental variables at multiple spatial scales

1. Aquatic communities are structured by multiple forces, and identifying the driving factors over multispatial scales is an important research issue. The East Asian monsoon region is globally one of the richest environments in terms of biodiversity, and is undergoing rapid human development, yet the river ecosystems in this region have not been well studied. We applied a hierarchical framework to incorporate regional and local environmental effects on stream macroinvertebrate communities in this region. The knowledge gained is expected to improve the understanding of the importance of spatial scale on regional and local diversity in the East Asian monsoon region. 2. A national data set of benthic macroinvertebrates and environmental variables (geographical, land‐use, hydrological, substratum and physicochemical elements) in Korean rivers was used to determine the habitat preferences of macroinvertebrates. 3. Latitude, proportion of forest coverage, riffle habitat, silt substratum and temperature were the most important determinants for the ordinations of macroinvertebrate communities in each category evaluated by canonical correspondence analysis (CCA). The optimal habitats for stream macroinvertebrates are not the same for all species, and overall community metrics and abundance of sensitive species tended to be lower in open agricultural and urban streams than in forested streams. The sensitivity of mayflies and stoneflies to anthropogenic disturbances implicated them as good indicators to assess the effects of urban and agricultural activities. 4. A partial CCA was used to evaluate the relative importance of macrohabitat and microhabitat variables on community composition at three spatial scales (whole country, the large Han River basin and two small sub‐basins in the lowlands and highlands). The majority of community variation (17–22% for each environmental element) was explained by macrohabitat variables at the regional spatial scale. In contrast, large proportions (15–18%) were explained by microhabitat variables at the local spatial scale. 5. Our findings indicate that the relative importance of habitat scales should be determined by geographical size and that comprehensive understanding of multispatial scale patterns can be important for implementing sound biodiversity conservation programmes.     

基于质谱技术的蛋白质互作研究进展

蛋白质作为生命活动的执行者,其功能往往体现在与其他蛋白质的相互作用中,研究蛋白-蛋白相互作用对于人们深入了解和预防传染病、靶向治疗多基因疾病、阐明蛋白质的分子作用机制及各种复杂的生命现象具有重要意义。目前,有多种技术被用来研究蛋白间的相互作用,研究难点在于实时捕获瞬时或弱蛋白质间的相互作用,质谱技术（mass spectrometry, MS）可在某种程度上解决该难点。由于质谱技术可研究简单的蛋白质复合物再到大规模的蛋白质组实验,基于质谱技术研究蛋白质间相互作用被越来越多地应用于科学研究中。综述了蛋白质间相互作用检测方法的研究进展,重点介绍了氢氘交换质谱法和化学交联质谱法研究蛋白质间相互作用的优缺点及其应用,最后对基于质谱技术研究蛋白质间相互作用进行了总结与展望,以期为深入开展相关研究提供借鉴。     

依赖于微环境的TGFβ信号

转化生长因子β（transforming growth factor β,TGFβ）家族成员是一类分泌的细胞因子,在胚胎发育、免疫调节、伤口修复、细胞增殖和抑制等过程中发挥重要作用。其中,TGFβ1、TGFβ2和TGFβ3在进化上最晚出现,并以潜伏态分泌。有别于家族中的大多数成员,TGFβ1-3的信号具有时空区域性,并依赖于其所处的微环境。阐明依赖于微环境的TGFβ信号的多层次调控机制对于理解TGFβ信号在免疫、癌症等生理、病理条件下的功能,以及开发临床治疗策略具有重要意义。本文从TGFβ前体复合物的结构入手,并从TGFβ的激活,配体-受体识别,跨膜信号传导及转录调控等方面,论述依赖于微环境的TGFβ信号的调控机制,同时讨论肿瘤微环境中多效的TGFβ信号,进而对今后的研究方向进行展望。     

FXR激动剂GW4064对裸鼠肝癌细胞移植瘤增殖及血管生成的影响

目的:探讨研究法尼酯x受体(FXR)激动剂GW4064对裸鼠肝癌细胞移植瘤增殖及血管生成的影响。方法:选取人肝癌细胞系Hep G2进行体外培养,将细胞悬液接种于BALB/c裸鼠皮下。裸鼠成瘤后,随机分为两组,分别腹腔注射DMSO和GW4064。一周后,处死动物取肿瘤组织,通过免疫组织化学法检测肿瘤组织中Ki-67和CD31的表达,同时计数肿瘤组织中的微血管密度(CD31-MVD);Western blot法检测其FXR和白介素-8(IL-8)的蛋白表达。结果:与对照组相比,FXR激动剂GW4064处理组的肿瘤组织中FXR的蛋白表达量明显增高,微血管密度CD31-MVD值显著降低,同时Ki-67、IL-8及CD31的表达水平均显著降低。结论:FXR激动剂GW4064能显著增加FXR的表达,抑制裸鼠肝癌细胞移植瘤的增殖及新生血管的形成。     

Synthesis,characterization and kinetics of formation of silver nanoparticles by reduction with adrenaline in the micellar media

The present paper describes about the easy, simple and convenient procedure for the synthesis of silver nanoparticles (Ag-NPs) in aqueous solutions by the reduction of silver nitrate with adrenaline. The surfactant molecules of cetyltrimethylammonium bromide (CTABr) and sodium dodecyl ate (SDS) behaved differently during the reduction of Ag⁺ ions by adrenaline. The obtained data suggest that the variation of [CTABr] gave a maxima-like curve for rate constant versus [CTABr], while, the values of rate constant decreased with the increase in [SDS]. The addition of surfactant molecules stabilized the Ag-NPs. The UV–Visible spectra were analyzed to deduce the particle size. The calculated sizes of the nanoparticles were further compared by the TEM images. The XRD spectrum confirmed the crystalline nature of silver nanoparticles having the face-centered cubic crystal structure. The edge length of unit cell was found 4.076 Å. The kinetics of formation of Ag-NPs was performed at different concentrations of adrenaline, AgNO₃, NaOH and [surfactant]. The values of rate constant were independent on [adrenaline] and [AgNO₃]. The increase in [NaOH] increased the rate of agglomeration of silver particles to form Ag-NPs. A linear relationship was obtained for the plot of rate constant versus [NaOH].     

黑线姬鼠种群结构与携带汉坦病毒相关性

汉坦病毒(Hantavirus,HV)是肾综合症出血热(Hemorrhagic fever with renal syndrome,HFRS)的主要病原体之一,HV的主要宿主动物为黑线姬鼠(Apodemus agrarius).针对西安市HFRS的持续高发病率,2010年7月-9月对西安市HFRS 疫区捕获的110只黑线姬鼠(阳性62只)进行年龄、性别鉴定.通过病毒RNA提取分析,发现黑线姬鼠雌雄个体携带病毒无显著差异,但是不同年龄段黑线姬鼠携带汉坦病毒却具有显著差异,年龄结构与病毒携带具有极显著的相关性.     

快速从医院废水中大规模分离铜绿假单胞杆菌噬菌体

目的:从医院废水中快速分离多株不同的铜绿假单胞杆菌噬菌体,研究其生物学特性,为建立铜绿假单胞杆菌噬菌体库做准备。方法:利用噬菌斑法从未经处理的医院污水中分离和鉴定铜绿假单胞杆菌噬菌体,根据感染谱的不同确定它们为不同的铜绿假单胞杆菌噬菌体;重点研究其中一株宿主谱较广的噬菌体的生物学特性,采用负染法电镜观察噬菌体的形态和大小,提取该噬菌体的基因组并进行酶切电泳分析,测定噬菌体感染复数并观察其一步生长曲线。结果:通过噬菌斑法分离出90株铜绿假单胞杆菌噬菌体。电镜观察显示,噬菌体Pa27P1头部呈立体对称,有一长尾;酶切结果显示,噬菌体Pa27P1的基因组为双链DNA;生长曲线表明噬菌体Pa27P1感染宿主菌的潜伏期为25 min,爆发时间为25 min,裂解量为514。结论:90株铜绿假单胞杆菌噬菌体中有5株具有较广的噬菌谱,其组合能裂解所有18株铜绿假单胞杆菌,为深入研究铜绿假单胞杆菌噬菌体的生物学特性及其功能提供了依据。     

Contrasting levels of genetic diversity between the historically rare orchid Cypripedium japonicum and the historically common orchid Cypripedium macranthos in South Korea

Many terrestrial orchids are historically rare and occur in small, spatially isolated populations. Theory predicts that such species will harbour low levels of genetic variation within populations and will exhibit a high degree of population genetic divergence, primarily as a result of genetic drift. If the origin of the present‐day populations is relatively recent from the same genetically depauperate source population, a complete lack of genetic differentiation between conspecific populations is expected. If a terrestrial orchid was historically common with moderate or high levels of genetic diversity, but has experienced more recent anthropogenic disturbance as a result of over‐collection, it would still exhibit initial levels of genetic variation within populations and a low degree of genetic divergence between populations. To test these predictions, we examined the genetic diversity in six populations (N = 131) of the historically and currently rare Cypripedium japonicum and in four populations (N = 94) of the historically common but now rare C. macranthos from South Korea. Fourteen putative allozyme loci resolved from eight enzyme systems revealed no variation either within or among populations of C. japonicum, which supports the first prediction. In contrast, populations of C. macranthos harboured high levels of genetic variation (mean percentage of polymorphic loci %P = 46.7; mean expected heterozygosity H_e = 0.185) and exhibited a low degree of population genetic divergence (G_ST = 0.059), supporting the second prediction. The lack of genetic variation both within and among conspecific populations of C. japonicum may suggest that populations originated from the same genetically depauperate ancestral population. The high levels of genetic diversity maintained in populations of C. macranthos suggest that the collection‐mediated decrease in the number of individuals is still too recent for long‐term effects on genetic variation. Based on current demographic and genetic data, in situ and ex situ conservation strategies should be provided to preserve genetic variation and to ensure the long‐term survival of the two species in the Korean Peninsula. © 2009 The Linnean Society of London, Botanical Journal of the Linnean Society, 2009, 160 , 119–129.     

增殖细胞核抗原基因表达量与中肋骨条藻生长的关系

对中国近海常见的赤潮藻-中肋骨条藻（Skeletonema costatum）生长相关的分子标记进行了研究,通过RT-PCR和RACE技术获得了其PCNA基因的部分序列,首次克隆测序得到了714bp的中肋骨条藻细胞色素b（Cytochrome b,Cyt b）基因序列。根据得到的PCNA与Cyt b基因序列,分别建立了检测中肋骨条藻PCNA与Cyt b基因的实时荧光定量PCR的标准曲线,并通过对已知浓度样品的检测证明了所建立标准曲线的准确性。以上述建立的方法为基础,研究了中肋骨条藻生长率与增殖细胞核抗原基因表达量之间的关系。结果发现,平均单细胞中PCNA表达量在培养的不同阶段变化很大,且变化趋势与生长率表现出良好的一致性,说明PCNA表达量与细胞分裂密切相关,体现了其作为细胞增殖指标的潜能;而Cyt b基因表达稳定,表达量变化很小,说明Cyt b基因是一个潜在的良好的内参基因。基于此,提出以PCNA为目的基因、Cyt b为内参基因,将PCNA基因的相对表达量（REQ）作为中肋骨条藻生长率的一个指标,并建立了实验室条件下PCNA相对表达量与中肋骨条藻生长率之间的关系式。     

rhSCF在大肠埃希菌中的高效表达及纯化

干细胞因子（SCF）是一种重要的造血生长因子,它在自体造血干细胞动员、肿瘤放疗化疗的辅助治疗以及其它血液病的治疗上具有良好的应用前景。为了制备高纯度、活性的重组人SCF,将人工合成的SCF的cDNA序列,克隆入原核表达载体pET43．1a中,转化大肠埃希菌BL21（DE3）,获得了高效表达菌株。SCF通过诱导表达形成包涵体,包涵体经洗涤、变性和初步纯化后,进行直接稀释复性,复性液经离子交换层析、分子筛层析等分离除去共价二聚体和异构体,获得纯度大于95％的重组人SCF样品,生物学比活性在7．0×10^5U／mg以上。结果表明：建立了有效的rhSCF制备工艺,且产物具有较高的纯度和生物学活性。