Genetic relationship between Treponema pallidum and Treponema pertenue, two noncultivable human pathogens.

Genetic relationships among two strains of Treponema pallidum (Nichols and KKJ) and a strain of T. pertenue were determined by measuring the degree of deoxyribonucleic acid sequence homology. The results in indicated that these three virulent, noncultivable treponemes were genetically indistinguishable. Like T. pallidum (Nichols), T. pertenue (Gauthier) had no detectable deoxyribonucleic acid sequence homology with T. phagedenis (biotype Reiter), T. refringens (biotype Noguchi), or with salmon sperm.     

野化放归丹顶鹤活动节律、家域特征和栖息地选择

了解野放丹顶鹤的运动模式、家域和栖息地选择的时间节律特征对丹顶鹤种群保护和栖息地管理尤为重要。基于GPS-GSM跟踪数据,综合运用3S技术、动态布朗桥模型、栖息地选择指数,研究了盐城海滨湿地野放丹顶鹤在不同生活周期的活动节律、家域的面积和重叠指数,以及栖息地选择。结果表明：(1)丹顶鹤日活动节律具有明显的周期性特征。丹顶鹤活动强度：育成期>越冬期>孵化期>育雏期,孵化期和育雏期日间活动强度平稳,育成期和越冬期呈“双峰”模式。(2)丹顶鹤95%家域面积均值介于(111.18±22.15)hm²—(621.28±105.77)hm²,育成期((621.28±105.77) hm²)>育雏期((226.83±54.86) hm²)>孵化期((112.40±7.72) hm²)>越冬期((111.18±22.15) hm²);核心家域面积均值介于(0.53±0.26)—(45.78±6.66) hm²,育成...     

中国省域旅游业碳中和时空分异与模拟

旅游业碳中和的实现对于旅游业的绿色高质量发展和可持续发展至关重要。基于全国尺度以30个省份为分析单元,在承接团队前期关于旅游业碳达峰研究成果的基础上,借助土地利用数据、碳吸收系数和灰色预测模型分别测算与模拟了近20年和未来40年各省旅游业碳汇,通过旅游业碳中和指数反映旅游业碳排放和旅游业碳汇之间的动态变化,并利用空间自相关探索旅游业碳中和指数的时空差异。结果表明：（1）未来40年,我国省域旅游业碳汇总体呈现出"南北高,中间低"的空间分布特征,大多数省份的旅游业碳汇不断增长。东北部地区和长江流域以南各地区的旅游业碳汇较为富余,华东地区的山东、江苏和上海等省份的旅游业碳汇则相对匮乏。（2）不同情景中,低碳情景下的旅游业碳中和实现情况最好,有云南、四川和青海等7个省份在2060年之前实现了旅游业碳中和,而中等情景和基准情景下均仅有黑龙江和云南2个省份能够如期或提前实现。其中,西部和北部沿边省份的旅游业碳中和实现情况都要优于其它地区。（3）各省旅游业碳中和指数在未来40年的等级分区大致呈现出从Ⅰ级区逐步向Ⅴ级区转变的趋势,我国总体旅游业碳赤字率由2030年的96.67%逐渐降至2060年的76.67%。（4）未来40年,我国省域旅游业碳中和指数在空间上总体处于集聚态势,热点和冷点的空间分布特征较为明显,且演化趋势较为稳定。其中,热点区和次热点区主要分布在西北、西南、华南和东北地区,冷点区和次冷点区集中分布在华北、华中和华东地区。研究有效探讨了旅游业碳中和研究的理论与范式,并为中国旅游业碳中和的实现提供了一定的现实参考。     

邻体竞争对城市森林微景观中针叶树视觉形态性状的影响

树木视觉形态性状是城市绿地微景观美学质量的重要影响因素之一,树木视觉形态性状的变化与其周围邻体木的竞争作用息息相关,但邻体竞争对树木视觉性状的作用机制尚不明确。研究于2022年8-10月对北京市城市公园中常见的针叶树种白皮松、侧柏、油松、圆柏展开调查,从树冠形态、干冠协调、树干形态3个方面构建了9个树木视觉形态性状指标,采用3个不同的竞争指标分析邻体竞争对针叶树种视觉形态性状的影响。结果表明,针叶树的树冠形态对邻体竞争的响应比较敏感,竞争中的白皮松、侧柏、油松、圆柏偏冠指数与孤立木相比分别提高了16.95%、28.95%、22.76%、17.67%;树冠缺失率分别提高了3.92%、6.09%、4.87%、4.95%。与孤立木相比,部分针叶树种高径比、分枝角变异度在多侧竞争环境中显著提高,而树冠舒展度则显著降低。邻体竞争强度越大,针叶树树冠的偏移与缺失程度越大。当针叶树受到强烈的侧方竞争时,对象木树冠和树干的径向生长显著受阻,表现为树冠舒展度大幅度下降、高径比显著提高,使树冠向细高方向发展。当针叶树上方的生长空间被占据时,其轴向生长同样受到严重阻碍,树木的冠径比和高径比维持较稳定状态。总体而言,四种针叶树种在视觉形态上对竞争胁迫的响应具有一定差异性,其中油松最为敏感,圆柏次之。综上,在城市森林微景观中,邻体竞争会导致针叶树种的树冠及树形发生明显变化,这种变化主要受综合资源竞争的影响,与其周围潜在生长空间的大小及对称性有关。在城市森林景观营建时,建议将针叶树栽植在对称的竞争环境中,但是其邻体木不宜过高,通过四周邻体木的适度竞争,能够促进针叶树的轴向生长,同时降低树冠偏移或变形的风险,提高其视觉美学效果。     

Long noncoding RNA lncMREF promotes myogenic differentiation and muscle regeneration by interacting with the Smarca5/p300 complex

Long noncoding RNAs (lncRNAs) play important roles in the spatial and temporal regulation of muscle development and regeneration. Nevertheless, the determination of their biological functions and mechanisms underlying muscle regeneration remains challenging. Here, we identified a lncRNA named lncMREF (lncRNA muscle regeneration enhancement factor) as a conserved positive regulator of muscle regeneration among mice, pigs and humans. Functional studies demonstrated that lncMREF, which is mainly expressed in differentiated muscle satellite cells, promotes myogenic differentiation and muscle regeneration. Mechanistically, lncMREF interacts with Smarca5 to promote chromatin accessibility when muscle satellite cells are activated and start to differentiate, thereby facilitating genomic binding of p300/CBP/H3K27ac to upregulate the expression of myogenic regulators, such as MyoD and cell differentiation. Our results unravel a novel temporal-specific epigenetic regulation during muscle regeneration and reveal that lncMREF/Smarca5-mediated epigenetic programming is responsible for muscle cell differentiation, which provides new insights into the regulatory mechanism of muscle regeneration.     

A backbone‐dependent rotamer library with high (ϕ, ψ) coverage using metadynamics simulations

Backbone‐dependent rotamer libraries are commonly used to assign the side chain dihedral angles of amino acids when modeling protein structures. Most rotamer libraries are created by curating protein crystal structure data and using various methods to extrapolate the existing data to cover all possible backbone conformations. However, these rotamer libraries may not be suitable for modeling the structures of cyclic peptides and other constrained peptides because these molecules frequently sample backbone conformations rarely seen in the crystal structures of linear proteins. To provide backbone‐dependent side chain information beyond the α‐helix, β‐sheet, and PPII regions, we used explicit‐solvent metadynamics simulations of model dipeptides to create a new rotamer library that has high coverage in the (ϕ, ψ) space. Furthermore, this approach can be applied to build high‐coverage rotamer libraries for noncanonical amino acids. The resulting Metadynamics of Dipeptides for Rotamer Distribution (MEDFORD) rotamer library predicts the side chain conformations of high‐resolution protein crystal structures with similar accuracy (~80%) to a state‐of‐the‐art rotamer library. Our ability to test the accuracy of MEDFORD at predicting the side chain dihedral angles of amino acids in noncanonical backbone conformation is restricted by the limited structural data available for cyclic peptides. For the cyclic peptide data that are currently available, MEDFORD and the state‐of‐the‐art rotamer library perform comparably. However, the two rotamer libraries indeed make different rotamer predictions in noncanonical (ϕ, ψ) regions. For noncanonical amino acids, the MEDFORD rotamer library predicts the χ ₁ values with approximately 75% accuracy.     

杜仲细胞悬浮培养产黄酮及其动力学研究

本文应用正交设计对杜仲细胞悬浮培养的基本培养基和植物生长物质浓度进行了筛选,并对影响杜仲细胞悬浮培养和总黄酮含量的不同因素进行了考察。结果表明,B5培养基+0.5mg/L NAA+0.6mg/L 6-BA、蔗糖30g/L、初始pH 5.0-5.5、接种量20g(FW)/L以及摇床转速110r/min为杜仲细胞悬浮培养的适宜条件。通过对杜仲悬浮细胞生长和代谢动力学的分析表明：杜仲细胞悬浮培养生长符合Logistic生长模型,最大比生长速率( m)为0.417d-1;细胞基于蔗糖的真正比生长得率(YG)与维持系数(m)分别为0.619g/g和0.0206g/(g·d-1);黄酮合成属部分生长耦联型,可用Luedeking-Piret模型进行描述。研究结果为杜仲细胞大规模悬浮培养生产天然活性成分奠定了基础。     

Noggin and bFGF cooperate to maintain the pluripotency of human embryonic stem cells in the absence of feeder layers

Human embryonic stem (hES) cells are typically maintained on mouse embryonic fibroblast (MEF) feeders or with MEF-conditioned medium. However, these xenosupport systems greatly limit the therapeutic applications of hES cells because of the risk of cross-transfer of animal pathogens. Here we showed that the bone morphogenetic protein antagonist noggin is critical in preventing differentiation of hES cells in culture. Furthermore, we found that the combination of noggin and basic fibroblast growth factor (bFGF) was sufficient to maintain the prolonged growth of hES cells while retaining all hES cell features. Since both noggin and bFGF are expressed in MEF, our findings suggest that they may be important factors secreted by MEF for maintaining undifferentiated pluripotent hES cells. Our data provide new insight into the mechanism how hES cell self-renewal is regulated. The newly developed feeder-free culture system will provide a more reliable alternative for future therapeutic applications of hES cells.     

ROCK1 induces ERK nuclear translocation in PDGF-BB-stimulated migration of rat vascular smooth muscle cells

It has been known that Rho-associated protein kinase (ROCK) signaling regulates the migration of vascular smooth muscle cells (VSMCs). However, the isoform-specific roles of ROCK and its underlying mechanism in VSMC migration are not well understood. The current study thus aimed to investigate the roles of ROCK1/2 and their relationship to the MAPK signaling pathway in platelet-derived growth factor (PDGF)-induced rat aorta VSMC migration by manipulating ROCK gene expression. The results revealed that ROCK1 small interfering ribonucleic acid (siRNA) rather than ROCK2 siRNA decreased PDGF-BB-generated VSMC migration, and upregulation of ROCK1 expression via transfection of constructed pEGFP-C1/ROCK1 plasmid further increased the migration of PDGF-BB-treated VSMCs. In PDGF-treated VSMCs, ROCK1 siRNA did not affect the phosphorylation levels of ERK and p38 in the cytoplasm, but decreased the level of ERK phosphorylation in the nucleus. These findings demonstrate that activated ROCK1 can promote VSMC migration through facilitating phosphorylation and nuclear translocation of ERK protein.