Atherocalcin, a gamma-carboxyglutamic acid containing protein from atherosclerotic plaque.

The specialized calcium binding amino acid, γ-carboxyglutamic acid (Gla) is quantitated in developing atherosclerotic plaque relative to progression of the disease, and a Gla-containing protein isolated from calcified atherosclerotic plaque is partially characterized. Low levels of Gla are found in fatty streak and fibrous plaque lesions, and a marked increase in Gla content occurs in calcified plaque. A unique Gla-containing protein is purified from 0.5M EDTA (pH 8.0) extracts of calcified plaque, named atherocalcin. The protein containing 19 Gla residues/1000 amino acids is 80,000 molecular weight, with a pI of 4.16 – 4.3 and is uniquely different from other known Gla-containing proteins. The implications of this work for the further understanding of the pathogenesis and therapy of atherosclerosis are discussed.     

Lysyl oxidase dependent synthesis of a collagen cross-link containing histidine

To date, collagen appears unique among proteins in that it contains histidine in certain of its cross-links. Synthesis of histidine containing collagen cross-links was studied in vitro with lathyritic L-¹⁴C histidine or L-¹⁴C lysine labelled bone collagen fibrils and purified lysyl oxidase. Synthesis of the tetrafunctional cross-link, dehydrohistidinohydroxymerodesmosine occurred with lysyl oxidase and was inhibited by β-aminopropionitrile. Synthesis began after a lag period of sixteen hours and then proceeded linearly for four days. These data indicate that enzyme dependent synthesis of dehydrohistidinohydroxymerodesmosine occurs in vitro in a biochemically defined system. Biosynthesis in vivo might occur under similar conditions.     

A 25,000 molecular weight protein constituent of human amyloid fibrils related to amyloid protein AA

Amyloid fibrils from a patient with diffuse amyloid disease are dissociated in 6 m guanidine hydrochloride and fractionated by gel chromatography. Two major components are separated on Sepharose 6B. Both proteins are characterized by chromatography, immunodiffusion, discontinuous gel electrophoresis, amino acid tryptic peptide mapping and amino acid sequence analysis. The smaller of the two components is typical of the known protein AA by size (8400 daltons), amino acid composition and a 30-residue N-terminal sequence. The larger of the components (25,000 daltons) undergoes electrophoresis as a single band and appears unaffected by thiol reduction. It differs from protein AA in amino acid content and by its tryptic peptide map, although it contains an N-terminal amino acid sequence identical to protein AA when carried to 20 residues. Treatment of this larger component by mild acid hydrolysis results in the release of the 8400-dalton protein AA. Fractionation after guanidine hydrochloride treatment of this particular amyloid fibril preparation is compared to the fractionation of a typical secondary amyloid preparation that contains only protein AA as the major component. The origin and relationship of the 8,400- and 25,000-dalton protein components is discussed.     

铜绿假单胞菌生防菌株抑菌代谢产物及其生防应用研究进展

微生物次生代谢产物的研究对开发微生物源农药具有重要意义。近年来一系列根际来源的铜绿假单胞菌被分离和鉴定,因其产生抑菌次生代谢产物,具有很好的生物防治效果。本文将系统综述铜绿假单胞菌生防菌株的种类及其抑菌代谢产物的多样性,并进一步介绍铜绿假单胞菌生防菌株的抑菌代谢产物合成机制及其遗传改造,简要讨论铜绿假单胞菌生防菌株抑菌代谢产物在生物防治上的应用和前景。     

Sialoglycan-binding patterns of bacterial AB5 toxin B subunits correlate with host range and toxicity,indicating evolution independent of A subunits

Many pathogenic bacteria secrete AB₅ toxins that can be virulence factors. Cytotoxic A subunits are delivered to the cytosol following B subunit binding to specific host cell surface glycans. Some B subunits are not associated with A subunits, for example, YpeB of Yersinia pestis, the etiologic agent of plague. Plague cannot be eradicated because of Y. pestis'' adaptability to numerous hosts. We previously showed selective binding of other B₅ pentamers to a sialoglycan microarray, with sialic acid (Sia) preferences corresponding to those prominently expressed by various hosts, for example, N-acetylneuraminic acid (Neu5Ac; prominent in humans) or N-glycolylneuraminic acid (Neu5Gc; prominent in ruminant mammals and rodents). Here, we report that A subunit phylogeny evolved independently of B subunits and suggest a future B subunit nomenclature based on bacterial species names. We also found via phylogenetic analysis of B subunits, which bind Sias, that homologous molecules show poor correlation with species phylogeny. These data indicate ongoing lateral gene transfers between species, including mixing of A and B subunits. Consistent with much broader host range of Y. pestis, we show that YpeB recognizes all mammalian Sia types, except for 4-O-acetylated ones. Notably, YpeB alone causes dose-dependent cytotoxicity, which is abolished by a mutation (Y77F) eliminating Sia recognition, suggesting that cell proliferation and death are promoted via lectin-like crosslinking of cell surface sialoglycoconjugates. These findings help explain the host range of Y. pestis and could be important for pathogenesis. Overall, our data indicate ongoing rapid evolution of both host Sias and pathogen toxin-binding properties.     

Inhibitory role of TRIP-Br1 oncoprotein in anticancer drug-mediated programmed cell death via mitophagy activation

Chemotherapy has been widely used as a clinical treatment for cancer over the years. However, its effectiveness is limited because of resistance of cancer cells to programmed cell death (PCD) after treatment with anticancer drugs. To elucidate the resistance mechanism, we initially focused on cancer cell-specific mitophagy, an autophagic degradation of damaged mitochondria. This is because mitophagy has been reported to provide cancer cells with high resistance to anticancer drugs. Our data showed that TRIP-Br1 oncoprotein level was greatly increased in the mitochondria of breast cancer cells after treatment with various anticancer drugs including staurosporine (STS), the main focus of this study. STS treatment increased cellular ROS generation in cancer cells, which triggered mitochondrial translocation of TRIP-Br1 from the cytosol via dephosphorylation of TRIP-Br1 by protein phosphatase 2A (PP2A). Up-regulated mitochondrial TRIP-Br1 suppressed cellular ROS levels. In addition, TRIP-Br1 rapidly removed STS-mediated damaged mitochondria by activating mitophagy. It eventually suppressed STS-mediated PCD via degradation of VDACI, TOMM20, and TIMM23 mitochondrial membrane proteins. TRIP-Br1 enhanced mitophagy by increasing expression levels of two crucial lysosomal proteases, cathepsins B and D. In conclusion, TRIP-Br1 can suppress the sensitivity of breast cancer cells to anticancer drugs by activating autophagy/mitophagy, eventually promoting cancer cell survival.     

大雾岭保护区穿山甲冬季生境选择

1999年12月至2001年2月,对大雾岭自然保护区穿山甲冬季栖息地的选择进行了研究,结果表明对林型选择的先后次序为针阔混交林、灌木丛、常绿阔叶林、针叶林;最偏爱针阔混交林,最不喜爱针叶林.多选择陡坡(30～ 60°);干扰源距离较远(>1 000 m),干扰程度小;林下草灌层盖度高(81% ～ 100%),隐蔽程度好; 阳坡或半阴半阳坡;中低海拔(760 ～ 1 500 m);中下坡位;水源距离较近(<500 m);乔木郁闭度适中(31% ～ 70%)的生境.较少选择上坡位,林下草灌层中低(0 ～ 50%),乔木郁闭度偏高(71%～ 100%)或偏低(0～ 30%),阴坡的生境.对洞口设置的要求是多朝南,而且要求隐蔽条件好,多数为全隐蔽或半隐蔽;最不喜爱将洞口设置在裸露、隐蔽程度差的生境,强力避免洞口向北.坡度、干扰源距离和林下草灌层盖度是影响穿山甲冬季栖息地选择的关键环境因子.     

Direct adenylation from 5′-OH-terminated oligonucleotides by a fusion enzyme containing Pfu RNA ligase and T4 polynucleotide kinase

5′-Adenylated oligonucleotides (AppOligos) are widely used for single-stranded DNA/RNA ligation in next-generation sequencing (NGS) applications such as microRNA (miRNA) profiling. The ligation between an AppOligo adapter and target molecules (such as miRNA) no longer requires ATP, thereby minimizing potential self-ligations and simplifying library preparation procedures. AppOligos can be produced by chemical synthesis or enzymatic modification. However, adenylation via chemical synthesis is inefficient and expensive, while enzymatic modification requires pre-phosphorylated substrate and additional purification. Here we cloned and characterized the Pfu RNA ligase encoded by the PF0353 gene in the hyperthermophilic archaea Pyrococcus furiosus. We further engineered fusion enzymes containing both Pfu RNA ligase and T4 polynucleotide kinase. One fusion enzyme, 8H-AP, was thermostable and can directly catalyze 5′-OH-terminated DNA substrates to adenylated products. The newly discovered Pfu RNA ligase and the engineered fusion enzyme may be useful tools for applications using AppOligos.     

应用免疫金银技术检测猪瘟病毒兔化弱毒株感染细胞

在应用免疫金银染色技术成功地对猪瘟病毒弱毒疫苗Thiveral株（CSFV．T株）感染的PK－15细胞进行检测的基础上,通过改进免疫金银反应的条件,进一步提高了免疫金银法的检测灵敏度和特异性。目前已将该技术应用到对猪瘟病毒兔化弱毒疫苗株（CSFVC株）感染细胞的检测,获得较为满意的实验结果。免疫金银染色技术的应用为研究CSFV在细胞中增殖的规律提供更为灵敏的检测手段,并且可望为猪瘟疫苗生产中的滴度测定提供一种简便有效的手段。     

广东罗坑自然保护区鳄蜥生境选择的季节性差异

2006年3-10月,在广东省罗坑鳄蜥自然保护区利用直接观察法对鳄蜥春、夏、秋3季的生境选择进行研究。春、夏、秋3季各测定了31、71、31个有鳄蜥样方以及50、90、51个对照样方的14种生态因子。利用生态因子对比分析和逐步判别分析确定各季节生境选择的主要影响因素。结果表明,春季影响鳄蜥生境选择的主要影响因素是溪沟底质中沙的含量和植被盖度,正确判别率为97.5%;夏季影响鳄蜥生境选择的主要影响因素是溪沟底质中沙的含量、植被盖度、溪流宽度和枯枝百分比,正确判别率为94.4%;秋季影响鳄蜥生境选择的主要影响因素是溪沟底质中沙的含量、植被盖度和可利用食物量,正确判别率为97.6%。在区分春、夏、秋3季鳄蜥生境选择方面有一系列生态因子发挥作用,依照贡献值的大小依次为可利用食物量、干扰距离、枯枝百分比、溪水流速、溪沟坡度和溪宽等6个因子,由这6个变量构成的方程对春、夏、秋3季鳄蜥生境的正确区分率达到76.7%。判别函数的分析表明,春、夏、秋3季鳄蜥的生境选择具有较高的差异性,以判别函数建立的判别分类图表明,春、夏季以及夏、秋季鳄蜥的生境选择重叠较多,而秋季与春季的重叠较少。