Expression, purification, and characterization of His-tagged Staphylococcus xylosus lipase wild-type and its mutant Asp 290 Ala

The gene encoding the extracellular lipase of Staphylococcus xylosus (SXL) was cloned using PCR technique. The sequence corresponding to the mature lipase was subcloned in the pET-14b expression vector, with a strong T7 promoter, to construct a recombinant lipase protein containing six histidine residues at the N-terminal. High level expression of the lipase by Escherichia coli BL21 (DE3) cells harbouring the lipase gene containing expression vector was observed upon induction with 0.4 mM IPTG at 37 degrees C. One-step purification of the recombinant lipase was achieved with Ni-NTA resin. The specific activity of the purified His-tagged SXL was 1500 or 850 U/mg using tributyrin or olive oil emulsion as substrate, respectively. It has been proposed that the region near the residue Asp290 could be involved in the selection of the substrate. Therefore, we also mutated the residue Asp 290 by Ala using site-directed mutagenesis. The mutant SXL-D290A was overexpressed in E. coli BL21 (DE3) and purified with the same nickel metal affinity column. The specific activity of the purified His-tagged SXL-D290A mutant was 1000 U/mg using either tributyrin or olive oil emulsion as substrate. A comparative study of the wild type (His(6)-SXL) and the mutant (His(6)-SXL-D290A) proteins was carried out. Our results confirmed that Asp290 is important for the chain length specificity and catalytic efficiency of the enzyme.     

Synthesis and structure of proteoglycan core protein

Studies of the structure and synthesis of cartilage proteoglycan core protein have been carried out. Deglycosylation of completed, secreted proteoglycan by HF-pyridine treatment yielded an intact homogeneous core protein of approximately 210,000 daltons, with a blocked amino-terminus. Greater than 95% of chondroitin sulfate chains and 80% of N- and O-linked oligosaccharides were removed by the procedure, which made the product an excellent xylosyltransferase acceptor. Little alteration of core protein structure occurred during the HF-pyridine treatment as shown by complete immunoreactivity with antiserums prepared against hyaluronidase-digested proteoglycan. In other studies, the initially synthesized precursor for proteoglycan core protein was found to be approximately 376,000 daltons and localized to the rough membrane fractions. This precursor already contained N-linked oligosaccharides, and was also able to accept xylose, thereby initiating chondroitin sulfate chains. The precursor was translocated intact in an energy-dependent manner to smooth membrane-Golgi fractions where further processing of high mannose type of oligosaccharides and addition of glycosaminoglycan chains occurred. The subcellular distribution pattern of the chondroitin sulfate-synthesizing enzymes corroborated the proposed topological modifications of the proteoglycan core protein precursor.     

Ethane production in copper-deficient rats

Evidence is accumulating which indicates that copper-deficient animals are prone to oxidative damage. To investigate this possibility further, we measured the production of breath ethane, a hydrocarbon by-product of lipid peroxidation, in copper-deficient rats. Male, weanling Sprague-Dawley rats were fed either a purified diet which was deficient in copper (CuD) or the same diet made sufficient with 5 ppm of copper (CuS). After 33 to 34 days the rats were placed individually in gastight metabolic cages through which ethane-free air or 100% O2 was passed. Expired ethane was absorbed onto cold, activated charcoal, liberated by heating, and measured by gas chromatography. Ethane production rates (pmoles/min/100 g +/- SD) were 3.3 +/- 0.8 (CuS-air), 4.3 +/- 1.4 (CuD-air), 8.3 +/- 2.5 (CuS-O2), and 12.2 +/- 4.3 (CuD-O2). Repeated measures analysis of variance indicated that both copper deficiency (P less than 0.01) and breathing 100% O2 (P less than 0.0001) enhanced ethane production, with no interaction between treatments. This finding complements previous evidence that increased lipid peroxidation occurs in copper-deficient rats.     

Synthesis,antimicrobial, anti-biofilm evaluation,and molecular modelling study of new chalcone linked amines derivatives

A series of amide chalcones conjugated with different secondary amines were synthesised and characterised by different spectroscopic techniques ¹H NMR, ¹³C NMR, and ESI-MS. They were screened for in vitro antibacterial activity. Compounds 36, 37, 38, 42, and 44 are the most active among the synthesised series exhibiting MIC value of 2.0–10.0?µg/ml against different bacterial strains. Compound 36 was equipotent to the standard drug Ampicillin displaying MBC value of 2.0?µg/ml against the bacterial strain Staphylococcus aureus. The products were screened for anti-biofilm activity. Compounds 36, 37, and 38 exhibited promising anti-biofilm activity with IC₅₀ value ranges from 2.4 to 8.6?µg. Molecular modelling was performed suggesting parameters of signalling anti-biofilm mechanism. AspB327 HisB340 (arene–arene interaction) and IleB328 amino acid residues seemed of higher importance to inhibit c-di-GMP. Hydrophobicity may be crucial for activity. ADME calculations suggested that compounds 36, 37, and 38 could be used as good orally absorbed anti-biofilm agents.     

Synthesis,Biological Evaluation,and Molecular Docking of Novel Thiazoles and [1,3,4]Thiadiazoles Incorporating Sulfonamide Group as DHFR Inhibitors

2‐(1‐{4‐[(4‐Methylphenyl)sulfonamido]phenyl}ethylidene)thiosemicarbazide ( 3 ) was exploited as a starting material for the synthesis of two novel series of 5‐arylazo‐2‐hydrazonothiazoles 6a  –  6j and 2‐hydrazono[1,3,4]thiadiazoles 10a  –  10d , incorporating sulfonamide group, through its reactions with appropriate hydrazonoyl halides. The structures of the newly synthesized products were confirmed by spectral and elemental analyses. Also, the antimicrobial, anticancer, and DHFR inhibition potency for two series of thiazoles and [1,3,4]thiadiazoles were evaluated and explained by molecular docking studies and SAR analysis.     

Exploration and local utilization of medicinal vegetation naturally grown in the Deusai plateau of Gilgit,Pakistan

In the study area, the traditional knowledge regarding the uses of local wild medicinal plants for the health care of human and domestic animals is totally in hold of old people. The young ones are unaware about such an indispensable practices. The objective of the current study was to transfer this sort of precious knowledge from old members of the community to young generations in documented form.     

Life forms,leaf size spectra,regeneration capacity and diversity of plant species grown in the Thandiani forests,district Abbottabad,Khyber Pakhtunkhwa,Pakistan

The life form and leaf size spectra of plant species of the Thandiani forests, district Abbottabad, were studied during the summer of 2013. These forests host 252 plant species of 97 families. Biological spectra showed that Hemicryptophytes (80 spp., 31.74%) were dominant followed by Megaphanerophytes (51 spp., 20.24%), Therophytes (49 spp., 19.44%) and Nanophanerophytes (45 spp., 17.86). Hemicryptophytes are the indicators of cold temperate vegetation. At the lower elevations, Megaphanerophytes and Nanophanerophytes were dominant which confirm trees as dominant habit form due to high soil depth, moisture and temperature factors. Data on Leaf spectra in the area showed that Microphyllous (88 spp., 34.92%) species were dominant followed by Leptophyllous (74 spp., 29.36%) and Nanophyllous (60 spp., 23.80%). The Microphyllous plants again are the indicator of cold temperate zone as the area is situated at an elevation of 1191–2626 m. Similarly, Nanophylls were dominant at lower elevations. Data on family importance values and diversity among various communities were also recorded. Life form and Leaf spectra studies could be used to understand the micro climatic variation of the region.     

Novel Multi-Broadband Plasmonic Absorber Based on a Metal-Dielectric-Metal Square Ring Array

Plasmonics - We numerically analyzed a simple and novel design of multi-broadband plasmonic absorber which consists of a planar array of thin gold square ring structures on dielectric/metal...     

Macrovipecetin,a C-type lectin from Macrovipera lebetina venom,inhibits proliferation migration and invasion of SK-MEL-28 human melanoma cells and enhances their sensitivity to cisplatin

Background

The resistance of melanoma cells to cisplatin restricts its clinical use. Therefore, the search for novel tumor inhibitors and effective combination treatments that sensitize tumor cells to this drug are still needed. We purified macrovipecetin, a novel heterodimeric C-type lectin, from Macrovipera lebetina snake venom and investigated its anti-tumoral effect on its own or combined with cisplatin, in human melanoma cells.

Measuring acoustic complexity in continuously varying signals: how complex is a wolf howl?

Communicative complexity is a key behavioural and ecological indicator in the study of animal cognition. Much attention has been given to measures such as repertoire size and syntactic structure in both bird and mammal vocalizations, as large repertoires and complex call combinations may give an indication of the cognitive abilities both of the sender and receiver. However, many animals communicate using a continuous vocal signal that does not easily lend itself to be described by concepts such as ‘repertoire’. For example, dolphin whistles and wolf howls both have complex patterns of frequency modulation, so that no two howls or whistles are quite the same. Is there a sense in which some of these vocalizations may be more ‘complex’ than others? Can we arrive at a quantitative metric for complexity in a continuously varying signal? Such a metric would allow us to extend familiar analyses of communicative complexity to those species where vocal behaviour is not restricted to sequences of stereotyped syllables. We present four measures of complexity in continuous signals (Wiener Entropy, Autocorrelation, Inflection Point Count, and Parsons Entropy), and examine their relevance using example data from members of the genus Canis. We show that each metric can lead to different conclusions regarding which howls could be considered complex or not. Ultimately, complexity is poorly defined and researchers must compare metrics to ensure that they reflect the properties for which the hypothesis is being tested.