Elastic priors to dynamically borrow information from historical data in clinical trials

Use of historical data and real-world evidence holds great potential to improve the efficiency of clinical trials. One major challenge is to effectively borrow information from historical data while maintaining a reasonable type I error and minimal bias. We propose the elastic prior approach to address this challenge. Unlike existing approaches, this approach proactively controls the behavior of information borrowing and type I errors by incorporating a well-known concept of clinically significant difference through an elastic function, defined as a monotonic function of a congruence measure between historical data and trial data. The elastic function is constructed to satisfy a set of prespecified criteria such that the resulting prior will strongly borrow information when historical and trial data are congruent, but refrain from information borrowing when historical and trial data are incongruent. The elastic prior approach has a desirable property of being information borrowing consistent, that is, asymptotically controls type I error at the nominal value, no matter that historical data are congruent or not to the trial data. Our simulation study that evaluates the finite sample characteristic confirms that, compared to existing methods, the elastic prior has better type I error control and yields competitive or higher power. The proposed approach is applicable to binary, continuous, and survival endpoints.     

Surface imprinted bio-nanocomposites for affinity separation of a cellular DNA repair protein

Apurinic/apyrimidinic endonuclease 1 (APE1) is a multifunctional DNA repair protein localized in different subcellular compartments. The mechanisms responsible for the highly regulated subcellular localization and “interactomes” of this protein are not fully understood but have been closely correlated to the posttranslational modifications in different biological context. In this work, we attempted to develop a bio-nanocomposite with antibody-like properties that could capture APE1 from cellular matrices to enable the comprehensive study of this protein. By fixing the template APE1 on the avidin-modified surface of silica-coated magnetic nanoparticles, we first added 3-aminophenylboronic acid to react with the glycosyl residues of avidin, followed by addition of 2-acrylamido-2-methylpropane sulfonic acid as the second functional monomer to perform the first step imprinting reaction. To further enhance the affinity and selectivity of the binding sites, we carried out the second step imprinting reaction with dopamine as the functional monomer. After the polymerization, we modified the nonimprinted sites with methoxypoly (ethylene glycol) amine (mPEG-NH₂). The resulting molecularly imprinted polymer-based bio-nanocomposite showed high affinity, specificity, and capacity for template APE1. It allowed for the extraction of APE1 from the cell lysates with high recovery and purity. Moreover, the bound protein could be effectively released from the bio-nanocomposite with high activity. The bio-nanocomposite offers a very useful tool for the separation of APE1 from various complex biological samples.     

Rhizosphere effect of nanoscale zero-valent iron on mycorrhiza-dependent maize assimilation

Rhizosphere effect of nanoscale zero-valent iron (nZVI) is crucial but little reported. Maize seeds were dressed with four nZVI concentrations (0, 1.0, 1.5, 2 g kg⁻¹) and inoculated with arbuscular mycorrhizal fungus (AMF) (Funneliformis mosseae). The SEM images illuminated that excessive nZVI particles (2 g kg⁻¹) were agglomerated on the surface of hyphae and spore, causing severe deformation and inactivation of AMF symbionts and thereafter inhibiting water uptake in maize seedlings. This restrained the scavenging effects of enzymatic (superoxide dismutase, peroxidase) and non-enzymatic compounds (proline & malondialdehyde) on ROS, and leaf photoreduction activity and gas exchange ability (p < 0.05). Interestingly, the inoculation with AMF effectively alleviated above negative effects. In contrast, appropriate dose of nZVI, that is, ≤1.5 g kg⁻¹, can be evenly distributed on the hyphae surface and form the ordered symbionts with AMF. This help massively to enhance hyphae growth and water and nutrient uptake. The enhanced mycorrhizal infection turned to promote rhizosphere symbiont activity and leaf Rubisco and Rubisco activase activity. Light compensation point was massively lowered, which increased photosynthetic carbon supply for AMF symbionts. Particularly, such priming effects were evidently enhanced by drought stress. Our findings provided a novel insight into functional role of nZVI in agriculture and AMF-led green production.     

益生菌辅助治疗牙周病的研究进展

牙周病是累及牙周支持组织的慢性感染性疾病。牙菌斑生物膜中的微生物及其代谢产物是其必不可少的始动因素,可导致口腔微生态失衡和宿主免疫反应,最终引起牙周病的发生发展。目前,牙周病的基础治疗主要是机械清除牙菌斑生物膜和牙石,但治疗效果具有局限性。益生菌通过产生抑菌物质、刺激局部免疫反应、与致病菌争夺黏膜受体和营养物质,从而改善口腔微生态平衡,促进牙周病的治疗。本文就近年来益生菌在牙周病治疗上的实验和临床研究、作用机制、安全性等进行综述,为将来益生菌辅助治疗牙周病的应用提供参考。     

降解嘌呤核苷乳酸菌的筛选及益生特性探索

【背景】高尿酸血症是人体内嘌呤代谢紊乱导致的一种慢性代谢疾病,利用乳酸菌降解嘌呤类物质是辅助治疗高尿酸血症的新方法。【目的】筛选高效降解嘌呤核苷的乳酸菌并对其益生特性进行研究。【方法】利用HPLC法评价乳酸菌对肌苷、鸟苷的降解效果。通过药敏性试验、体外耐受性试验及细胞黏附试验研究目标菌株的益生特性。【结果】筛选出一株发酵乳杆菌(Lactobacillus fermentum) SR2-6,对肌苷和鸟苷的降解率分别为99.26%和98.85%。该菌株对青霉素、氯霉素等5种常见抗生素不具备耐药性,在pH 2.0环境下处理4 h后菌株的存活率为76.51%,在饱腹状态下的人工肠液模拟消化4 h后活菌数仍能达到6.85 lg (CFU/mL),对Caco-2细胞的黏附数为(52.29±15.14) CFU/cell。【结论】发酵乳杆菌SR2-6能够高效降解肌苷和鸟苷且具有优良的益生特性,是预防和治疗高尿酸血症的潜在优势菌株,可作为优势菌种资源应用于相关功能产品的开发。     

温州地区小杓鹬的代谢产热特征

动物能量代谢相关的生理生态特征与其地理分布密切相关。为探讨温州地区迁徙鸟类小杓鹬(Numenius minutus)的代谢产热特征及体温调节,本文在环境温度(T_a)5.0～42.5℃范围内,测定了小杓鹬的代谢率(R_m,以单位时间耗氧量表示,ml/h)和体温,并计算不同环境温度的热传导。结果显示：在环境温度为5～35℃的范围内,小杓鹬的体温维持相对恒定,平均体温为(42.8±0.10)℃;热中性区为27.5～40.0℃;在热中性区温度范围内,代谢率即基础代谢率为(221.31±6.01)ml/h,是体重预期值的141%;环境温度在5.0～27.5℃范围内,代谢率与环境温度(T_a,℃)呈负相关,回归方程为R_m=587.10﹣11.78 T_a;在5.0～27.5℃的环境温度范围内,小杓鹬的热传导最低,平均为(0.11±0.00)ml/(g·h·℃),是体重预期值的212%;代谢预期比和热传导预期比的比值(F值)为1.21,表明该物种有较好的体温调节能力。小杓鹬具有较高的体温和基础代谢...     

广西防城港黑翅长脚鹬的繁殖行为

本研究于2021年3～9月,采用目标观察和全事件记录法,对广西防城港市钦州湾八路水湿地黑翅长脚鹬（Himantopus himantopus）的繁殖习性进行全过程观察记录。黑翅长脚鹬的栖息生境主要在盐田、虾塘和鱼塘,而巢主要分布在盐田生境。共发现39巢,雌雄共同营巢,按照主要巢材将其巢分为干草巢、碎石巢、泥皮巢和牛毛毡草巢4种;巢材包括禾本科（Gramineae）和莎草科（Cyperaceae）植物以及碎石、贝壳等;巢外径为（23.3±10.7）cm,巢内径为（11.2±1.9）cm,巢深为（1.6±0.5）cm,巢高为（6.5±4.3）cm(n=39);筑巢需（3±2）d(n=6)。窝卵数2～4枚,1～2 d产1枚卵,7 d内产完满窝卵（n=6）。雌雄均参与孵卵,雄性孵卵时间比雌性长,但二者差异不显著（P> 0.05）,雄性（8 550±245.9）min,雌性（7 530±263.3）min,孵卵期为（25±2）d(n=6)。育雏期（26±3）d(n=6),雌雄轮流育雏,育雏前、中期（雏鸟1～20d日龄）,雌性育雏时间比雄性长,是雄性的2倍,育雏后期（雏鸟大于20 d日龄）,...     

fliY基因失活减弱沙福芽孢杆菌ST7菌株的锰氧化能力

【背景】沙福芽孢杆菌ST7菌株具有较强的锰氧化能力,但其分子机制不清楚。【目的】着重研究鞭毛马达开关蛋白基因(fliY)对沙福芽孢杆菌锰氧化能力的影响。【方法】根据同源重组原理,以沙福芽孢杆菌ST7菌株为起始菌株,构建fliY基因敲除的突变株ΔfliY,测定菌落迁徙、细菌生物膜和锰氧化率等,研究fliY基因突变后菌株的运动能力、生物膜生成和锰氧化能力是否发生变化。【结果】经克隆测序,证实突变株ΔfliY中fliY基因的后半段被卡纳霉素抗性基因取代,fliY基因失活;与野生型菌株ST7相比,突变株ΔfliY在全营养的LB培养基中生长变化不大,但在含锰的PYCM培养基中,突变株的生长速度减慢、菌落较小、生物膜生成量显著下降,运动性和锰氧化能力分别下降65%和20%。【结论】fliY基因不仅影响菌株的生长和运动,而且参与细菌的趋化和锰氧化等生物学过程。     

植物根际促生菌促生特性研究进展

根际微生物组是决定农作物健康状况的关键因素之一,也是调节农作物与生物和非生物环境相互作用的重要因素。植物根际促生菌(plant growth-promoting rhizobacteria, PGPR)为农作物宿主提供了多种有益作用,通过化学交流以复杂的方式与农作物、土壤相互作用,进而促进农作物生长。本文综述了PGPR对农作物的促生机制、PGPR与农作物的互作及其在农业实践中的应用,并展望了PGPR在农业实践中应用的发展趋势,以期为今后PGPR的应用和研究提供新的思路和理论支撑。     

乌鲁木齐市道路林带土壤抗重金属细菌的筛选及重金属去除能力

【背景】道路重金属污染问题日益严峻,寻找高效的微生物资源用于环境修复已迫在眉睫。【目的】从乌鲁木齐市道路林带土壤中筛选抗重金属菌株,并对其重金属去除能力进行探究。【方法】使用含5种重金属离子(铅、镉、锌、铜、镍)的4种培养基进行抗性菌株筛选,通过形态学特征和16S rRNA基因序列进行鉴定,采用电感耦合等离子体发射光谱仪(inductively coupled plasma optical emission spectrometer,ICP-OES)检测分离株对重金属离子的去除情况。【结果】4种分离培养基中,TSA是抗重金属菌株筛选的最适培养基,共筛选出16株抗重金属菌,其中4株抗Pb菌、4株抗Cd菌、4株抗Zn菌、3株抗Cu菌和1株抗Ni菌,其抗性分别高达3 000、800、600、300和400mg/L,16株菌中以芽孢杆菌属(Bacillus)数量最多。在初始浓度为700mg/L Pb²⁺下,菌株Pb6的去除率高达92.48%,菌株Pb11、Pb3和Pb9的去除率分别为27.70%、40.37%和58.88%;在200mg/L Cd²⁺...