Limitations of conventional regression analysis a proposed modification

Summary The conventional genotype-environment interaction analysis cannot detect the theoretically ideal genotype which has been defined as the one with relatively low sensitivity in the poor environments and high sensitivity in the favourable environments. The computation of separate regression coefficients on the two regions of the response curve has been suggested to detect such genotypes. This procedure is simple and more convenient than the complicated curvilinear regression analysis.     

Repeatability of stability estimators for downy mildew incidence in pearl millet

Summary Repeatability of mean downy mildew (Sclerospora graminicola (Sacc.) Schroet.) incidence, regression coefficients and deviation mean squares were investigated for 25 pearl millet (Pennisetum typhoides (Burm.) Stapf. & Hubb.) genotypes in 20 environments by correlating arrays of these stability parameters over subsets of the 20 environments arranged according to the year-wise, random, stratified and extreme methods of environmental division. Correlation coefficients between arrays of mean downy mildew incidence from different pairs of subsets ranged from 0.57 to 0.98 and those of deviation mean squares from 0.58 to 0.96 indicating good repeatability of these parameters. Arrays of regression coefficients from different subsets, on the other hand, showed correlation coefficients that ranged from –0.58 to 0.96. Apparently, the regression index of stability was not repeatable for the genotypes and environments studied. Therefore, in order to identify a widely adapted genotype, testing is required to be carried out over a wider range of environments.     

Degradation of Alachlor [2-chloro-N-(methoxymethyl)-2′,6′-diethylacetanilide] by soil fungi

Summary A Penicillium sp. and a Trichoderma sp. were isolated from a soil previously treated with alachlor which is commonly used as herbicide. These fungi were found to degrade alachlor and only one degradation product was observed after 15 days of incubation. Whereas two products were noticed after 30 days with both the test organisms. re]19740913     

Evaluation of commercial soil health tests using a medium-term cover crop experiment in a humid,temperate climate

Plant and Soil - Microbial-driven biogeochemical cycles of phosphorus (P) in wetlands subjected to global climate warming result in a downstream eutrophication risk. However, how warming influences...     

The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria

Background

Neurotrophins and their Trk and p75NTR receptors play an important role in the nervous system. To date, neurotrophins, Trk and p75NTR have only been found concomitantly in deuterostomes. In protostomes, homologues to either neurotrophin, Trk or p75NTR are reported but their phylogenetic relationship to deuterostome neurotrophin signaling components is unclear. Drosophila has neurotrophin homologues called Spätzles (Spz), some of which were recently renamed neurotrophins, but direct proof that these are deuterostome neurotrophin orthologues is lacking. Trks belong to the receptor tyrosine kinase (RTK) family and among RTKs, Trks and RORs are closest related. Flies lack Trks but have ROR and ROR-related proteins called NRKs playing a neurotrophic role. Mollusks have so far the most similar proteins to Trks (Lymnaea Trk and Aplysia Trkl) but the exact phylogenetic relationship of mollusk Trks to each other and to vertebrate Trks is unknown. p75NTR belongs to the tumor necrosis factor receptor (TNFR) superfamily. The divergence of the TNFR families in vertebrates has been suggested to parallel the emergence of the adaptive immune system. Only one TNFR representative, the Drosophila Wengen, has been found in protostomes. To clarify the evolution of neurotrophin signaling components in bilateria, this work analyzes the genome of the crustacean Daphnia pulex as well as new genetic data from protostomes.

Results

The Daphnia genome encodes a neurotrophin, p75NTR and Trk orthologue together with Trkl, ROR, and NRK-RTKs. Drosophila Spz1, 2, 3, 5, 6 orthologues as well as two new groups of Spz proteins (Spz7 and 8) are also found in the Daphnia genome. Searching genbank and the genomes of Capitella, Helobdella and Lottia reveals neurotrophin signaling components in other protostomes.

Conclusion

It appears that a neurotrophin, Trk and p75NTR existed at the protostome/deuterostome split. In protostomes, a "neurotrophin superfamily" includes Spzs and neurotrophins which respectively form two paralogous families. Trks and Trkl proteins also form closely related paralogous families within the protostomian RTKs, whereby Trkls are absent in deuterostomes. The finding of p75NTR in several protostomes suggests that death domain TNFR superfamily proteins appeared early in evolution.     

Transient Gene Expression in Serum-Free Suspension-Growing Mammalian Cells for the Production of Foot-and-Mouth Disease Virus Empty Capsids

Foot-and-mouth disease (FMD) is a highly contagious disease of cloven-hoofed animals. It produces severe economic losses in the livestock industry. Currently available vaccines are based on inactivated FMD virus (FMDV). The use of empty capsids as a subunit vaccine has been reported to be a promising candidate because it avoids the use of virus in the vaccine production and conserves the conformational epitopes of the virus. In this report, we explored transient gene expression (TGE) in serum-free suspension-growing mammalian cells for the production of FMDV recombinant empty capsids as a subunit vaccine. The recombinant proteins produced, assembled into empty capsids and induced protective immune response against viral challenge in mice. Furthermore, they were recognized by anti-FMDV bovine sera. By using this technology, we were able to achieve expression levels that are compatible with the development of a vaccine. Thus, TGE of mammalian cells is an easy to perform, scalable and cost-effective technology for the production of a recombinant subunit vaccine against FMDV.     

Correlated Changes in Body Melanisation and Mating Traits of Drosophila melanogaster: A Seasonal Analysis

Altitudinal localities of the northern India are associated with high seasonal changes. Drosophila melanogaster flies are darker during the winter season as compared to the autumn season. We tested the hypothesis whether there are altitudinal clines for mating related traits. We observed negative cline for mating latency and positive for copulation period along altitude in D. melanogaster. We further tested if seasonally varying body melanisation is correlated with mating propensity in D. melanogaster. Thus, we examined the D. melanogaster flies collected during autumn and winter season for changes in body melanisation and mating-related traits. Flies from the winter season show high melanisation, copulation duration and fecundity/day as compared to the autumn season flies. By contrast mating latency is longer during autumn as compared to winter season. Based on within- and between-population analysis, body melanisation shows positive correlation with copulation duration and fecundity/day, while negative correlation with mating latency. Within-population analyses show no correlation between body size and ovariole number with body melanisation. Thus, our data suggest that seasonal changes in body melanisation are correlated with mating latency, copulation duration and fecundity/day, but no correlation with body size and ovariole numbers. Further, we observed that seasonal changes in these clines, although have some component of plasticity, have strong genetic basis as the seasonal and population differences were maintained for various traits after 8 generations in the laboratory.     

Shifting clinal patterns of stress resistance traits in Drosophila ananassae

Drosophila ananassae, a desiccation and cold sensitive species, is abundant along the latitudinal gradient of the Indian subcontinent. Analysis of seasonally varying wild-caught flies showed two independent patterns of melanisation: (1) narrow to broad melanic stripes on three anterior abdominal segments only; (2) a novel body color pattern (dark vs. light background). We investigated the degree to which these two melanisation systems vary; first with latitude and secondly among seasons. There is a shallow latitudinal cline for percent striped melanisation as well as for frequency of body color alleles during the rainy season. The frequencies of body color alleles vary significantly across seasons in the northern populations i.e. the light allele occur abundantly (>0.94) during the rainy season while the frequency of the dark allele increases (0.22–0.35) during the dry season causing steeper clines during the dry season. By contrast, the low variations in abdominal stripes showed non-significant changes and the cline was similar across seasons. Furthermore, both types of melanisation patterns showed no plasticity with respect to temperature. The present study also investigated clines related to desiccation, heat and cold stress in D. ananassae females across seasons (rainy and dry) from nine latitudinal populations. The clines for stress related traits changes to steeper and non-linear during the dry season. Thus, latitudinal populations of D. ananassae differ in slope values of clines for stress related traits across seasons. This study reports seasonal changes in latitudinal clines of stress resistance traits as seen in a changing frequency of body color alleles of D. ananassae in northern locality, while in southern localities it remains constant. This is presumably the result of only minor seasonal changes in humidity and temperature in the South, whereas in the North seasonal climatic variability is much higher.     

Aufreinigung von Fumonisinen und ihren Hydrolysaten über ein neuartiges Festphasenextraktions-Material

Tests with various clean-up materials after optimisation of different parameters showed that the use of Oasis® material resulted in matrixless chromatograms in HPLC-FLD. The selectivity and detection limit of the method was improved by using LC-MS/MS as the detection system. Mean recovery was 100%, and no negative food matrix effects could be observed.