Pep5, a new lantibiotic: structural gene isolation and prepeptide sequence

A wobbled 14-mer oligonucleotide was derived from the amino acid sequence of the 34-residue propeptide of the lantibiotic Pep5 (Kellner et al. 1989). Using this hybridization probe, the structural gene of Pep5, pepA, was located on the 18.6 kbp plasmid pED503. The nucleotide sequence of pepA codes for a prepeptide with 60 residues and proves that Pep5 is ribosomally synthesized. The N-terminus of the prepeptide has a high -helix probability and a characteristic proteolytic cleavage site precedes the C-terminal 34-residue propeptide. Our present theory is that maturation of Pep5 involves (a) enzymic conversion of Thr, Ser and Cys into dehydrated amino acids and sulfide bridges, (b) membrane translocation and cleavage of the modified prepeptide.Dedicated to Prof. H. Zähner on the occasion of his sixtieth birthday     

Two-Component Anti-Staphylococcus aureus Lantibiotic Activity Produced by Staphylococcus aureus C55

Staphylococcus aureus C55 was shown to produce bacteriocin activity comprising three distinct peptide components, termed staphylococcins C55α, C55β, and C55γ. The three peptides were purified to homogeneity by a simple four-step purification procedure that consisted of ammonium sulfate precipitation followed by XAD-2 and reversed-phase (C₈ and C₁₈) chromatography. The yield following C₈ chromatography was about 86%, with a more-than-300-fold increase in specific activity. When combined in approximately equimolar amounts, staphylococcins C55α and C55β acted synergistically to kill S. aureus or Micrococcus luteus but not S. epidermidis strains. The N-terminal amino acid sequences of all three peptides were obtained and staphylococcins C55α and C55β were shown to be lanthionine-containing (lantibiotic) molecules with molecular weights of 3,339 and 2,993, respectively. The C55γ peptide did not appear to be a lantibiotic, nor did it augment the inhibitory activities of staphylococcin C55α and/or C55β. Plasmids of 2.5 and 32.0 kb are present in strain C55, and following growth of this strain at elevated temperature (42°C), a large proportion of the progeny failed to produce strong bacteriocin activity and also lost the 32.0-kb plasmid. Protoplast transformation of these bacteria with purified 32-kb plasmid DNA regenerates the ability to produce the strong bacteriocin activity.     

Protein engineering of lantibiotics

Whereas protein engineering of enzymes and structural proteins nowadays is an established research tool for studying structure-function relationships of polypeptides and for improving their properties, the engineering of posttranslationally modified peptides, such as the lantibiotics, is just coming of age. The engineering of lantibiotics is less straightforward than that of unmodified proteins, since expression systems should be developed not only for the structural genes but also for the genes encoding the biosynthetic enzymes, immunity protein and regulatory proteins. Moreover, correct posttranslational modification of specific residues could in many cases be a prerequisite for production and secretion of the active lantibiotic, which limits the number of successful mutations one can apply. This paper describes the development of expression systems for the structural lantibiotic genes for nisin A, nisin Z, gallidermin, epidermin and Pep5, and gives examples of recently produced site-directed mutants of these lantibiotics. Characterization of the mutants yielded valuable information on biosynthetic requirements for production. Moreover, regions in the lantibiotics were identified that are of crucial importance for antimicrobial activity. Eventually, this knowledge will lead to the rational design of lantibiotics optimally suited for fighting specific undesirable microorganisms. The mutants are of additional value for studies directed towards the elucidation of the mode of action of lantibiotics.     

Role of hydroxyl radical in the oxidant H2O2-mediated Ca2+ release from pulmonary smooth muscle mitochondria

We sought to investigate the mechanism(s) by which the oxidant H₂O₂ stimulates Ca²⁺ release from mitochondria of bovine pulmonary vascular smooth muscle tissue and to test the hypothesis that hydroxyl radical is involved in this phenomenon. Treatment of the smooth muscle tissue with 1 mM H₂O₂ dramatically stimulated hydroxyl radical generation as measured by methane (CH₄) production by GLC using dimethylsulfoxide (DMSO) as the substrate. Pretreatment of the mitochondria with the hydroxyl radical scavanger dimethylthiourea (DMTU) prevented the increase in CH₄ production caused by H₂O₂. In the absence of EGTA, H₂O₂ caused stimulation of Ca²⁺ release from mitochondria occurred with a lag time of about 4 min. Addition of EGTA to Ca²⁺ loaded mitochondria resulted an immediate loss of Ca²⁺ and that has been found to be augmented by H₂O₂. The release of Ca₂₊ by H₂O₂ did not appear to occur with concommitant increase in sucrose entry into, K⁺ release from, and swelling of mitochondria when the Ca²⁺ cycling was prevented by EGTA. These observations suggested that H₂O₂-mediated Ca²⁺ release from bovine pulmonary vascular smooth muscle tissue mitochondria occurred (i) through the involvement of hydroxyl radical; (ii) via specific pathway(s); and (iii) did not appear to happen primarily via nonspecific pore formation.Abbreviations H₂O₂ hydrogen peroxide - OH· hydroxyl radical - t-buOOH tert-butyl hydroperoxide - CH₄ methane - GLC gas liquid chromatography - DMTU dimethylthiourea - EGTA ethylene glycol bis(-aminoethyl ether) - N Ntetraacetic acid - DMSO dimethyl sulfoxide - CH₄ methane - HBPS Hank's buffered physiological saline - HEPES N-2-hydroxyethylpiperazine-N-2-ethane sulfonic acid - MOPS 3-(N-morpholino)propane sulfonic acid - Tris tris (hydroxymethyl aminomethane)     

The fragile X mutation does not have any major effect on the expression of the hypoxanthine phosphoribosyltransferase (HPRT) locus in human fibroblasts

Summary The possible influence of the fragile X mutation at Xq27 on the expression of the neighbouring gene (at Xq26) for hypoxanthine phosphoribosyl transferase (HPRT) was studied by determination of the levels of HPRT-RNA and HPRT enzyme activity in fibroblast cell cultures from 7 fragile X patients. These levels were lower (although not statistically significantly lower) than in normal fibroblast cultures. Hence, these data do not support the notion of a major effect of the fragile X mutation on the expression of the HPRT gene.     

Predicting the effects of future climate change on the distribution of an endemic damselfly (Odonata,Coenagrionidae) in subtropical South American grasslands

Climate change is predicted to affect the distribution of freshwater taxa, and stronger impacts are expected on endemic species. However, the effects of future climates on freshwater insects from the Neotropical region have been generally overlooked. In this study, the distribution of a damselfly (Cyanallagma bonariense, Odonata, Coenagrionidae) endemic to the subtropical South American grasslands (Pampa) was modelled in relation to future scenarios of high greenhouse gas emissions (RCP 8.5) for 2050 and 2070. For this purpose, ecological niche models were developed based on assumptions of limited dispersal and niche conservatism, and the projected distribution of C. bonariense was contrasted with the location of current protected areas (PAs) in the Pampa. A broad potential distribution of C. bonariense was indicated throughout the Pampa, and projections predicted a predominance of range contractions rather than range shifts in climatically suitable areas for C. bonariense in 2050 and 2070. Projections of suitable areas overlapped in central Argentina and southernmost Uruguay in these periods. Our results indicated a potential resilience of C. bonariense to future climate change, which is likely related to the low restrictions in habitat use of C. bonariense. In every projection, however, most PAs were expected to lose effectiveness, as by 2070 most PAs fall outside the range of the predicted distribution of C. bonariense. Thus, the creation or enlargement of PAs in these areas is recommended and these results represent an important information for the conservation of endemic freshwater insects under global warming scenarios in an overlooked Neotropical landscape.     

Water body type and land cover shape the dragonfly communities (Odonata) in the Pampa biome,Rio Grande do Sul,Brazil

The biogeographical region known as the Pampa biome in southern Brazil, was originally mainly covered with open fields or grassland, with areas of riparian forest surrounding the water bodies. Today this landscape appears highly fragmented due to agricultural activities such as rice cultivation, extensive cattle farming, and forest plantations. Studies have shown that the Pampa biome has high levels of biodiversity and endemism, but with regard to invertebrates, this biome is still one of the least known in Brazil. We therefore designed a study comparing the dragonfly (Odonata) communities to environmental and landscape features in this area, measuring diversity by species richness, relative abundance and Shannon index. Our results showed that the Pampa is a biome very rich in odonates, and that the species communities are highly dependent on the environmental conditions of the area. Habitats such as Rivers/Streams, bordered by native grasslands and riparian forests, were shown to harbour communities that were ecologically more complex and sensitive than other habitat types. Man-made lakes and agricultural areas displayed lower levels of biodiversity and odonate communities dominated by generalist species. By combining data on the communities of Odonata and other taxa, our analyses may be instrumental in determining priority areas for future conservation measures within the area.     

Higher-level snake phylogeny inferred from mitochondrial DNA sequences of 12S rRNA and 16S rRNA genes

Portions of two mitochondrial genes (12S and 16S ribosomal RNA) were sequenced to determine the phylogenetic relationships among the major clades of snakes. Thirty-six species, representing nearly all extant families, were examined and compared with sequences of a tuatara and three families of lizards. Snakes were found to constitute a monophyletic group (confidence probability [CP] = 96%), with the scolecophidians (blind snakes) as the most basal lineages (CP = 99%). This finding supports the hypothesis that snakes underwent a subterranean period early in their evolution. Caenophidians (advanced snakes), excluding Acrochordus, were found to be monophyletic (CP = 99%). Among the caenophidians, viperids were monophyletic (CP = 98%) and formed the sister group to the elapids plus colubrids (CP = 94%). Within the viperids, two monophyletic groups were identified: true vipers (CP = 98%) and pit vipers plus Azemiops (CP = 99%). The elapids plus Atractaspis formed a monophyletic clade (CP = 99%). Within the paraphyletic Colubridae, the largely Holarctic Colubrinae was found to be a monophyletic assemblage (CP = 98%), and the Xenodontinae was found to be polyphyletic (CP = 91%). Monophyly of the henophidians (primitive snakes) was neither supported nor rejected because of the weak resolution of relationships among those taxa, except for the clustering of Calabaria with a uropeltid, Rhinophis (CP = 94%).      

Effects function analysis of ELF magnetic field exposure in the electric utility work environment

The incomplete understanding of the relation between power-frequency fields and biological responses raises problems in defining an appropriate metric for exposure assessment and epidemiological studies. Based on evidence from biological experiments, one can define alternative metrics or effects functions that embody the relationship between field exposure patterns and hypothetical health effects. In this paper, we explore the application of the “effects function” approach to occupational exposure data. Our analysis provides examples of exposure assessments based on a range of plausible effects functions. An EMDEX time series data set of ELF frequency (40–800 Hz) magnetic field exposure measurements for electric utility workers was analyzed with several statistical measures and effects functions: average field strength, combination of threshold and exposure duration, and field strength changes. Results were compared for eight job categories: electrician, substation operator, machinist, welder, plant operator, lineman/splicer, meter reader, and clerical. Average field strength yields a different ranking for these job categories than the ranks obtained using other biologically plausible effects functions. Whereas the group of electricians has the highest exposure by average field strength, the group of substation operators has the highest ranking for most of the other effects functions. Plant operators rank highest in the total number of field strength changes greater than 1 μT per hour. The clerical group remains at the lowest end for all of these effects functions. Our analysis suggests that, although average field strength could be used as a surrogate of field exposure for simply classifying exposure into “low” and “high,” this summary measure may be misleading in the relative ranking of job categories in which workers are in “high” fields. These results indicate the relevance of metrics other than average field strength in occupational exposure assessment and in the design and analysis of epidemiological studies. Bioelectromagnetics 18:365–375, 1997. © 1997 Wiley-Liss, Inc.     

Aggregates of nisin with various bactoprenol-containing cell wall precursors differ in size and membrane permeation capacity

Many lantibiotics use the membrane bound cell wall precursor Lipid II as a specific target for killing Gram-positive bacteria. Binding of Lipid II usually impedes cell wall biosynthesis, however, some elongated lantibiotics such as nisin, use Lipid II also as a docking molecule for pore formation in bacterial membranes. Although the unique nisin pore formation can be analyzed in Lipid II-doped vesicles, mechanistic details remain elusive. We used optical sectioning microscopy to directly visualize the interaction of fluorescently labeled nisin with membranes of giant unilamellar vesicles containing Lipid II and its various bactoprenol precursors. We quantitatively analyzed the binding and permeation capacity of nisin when applied at nanomolar concentrations. Specific interactions with Lipid I, Lipid II and bactoprenol-diphosphate (C₅₅-PP), but not bactoprenol-phosphate (C₅₅-P), resulted in the formation of large molecular aggregates. For Lipid II, we demonstrated the presence of both nisin and Lipid II in these aggregates. Membrane permeation induced by nisin was observed in the presence of Lipid I and Lipid II, but not in the presence of C₅₅-PP. Notably, the size of the C₅₅-PP–nisin aggregates was significantly smaller than that of the aggregates formed with Lipid I and Lipid II. We conclude that the membrane permeation capacity of nisin is determined by the size of the bactoprenol-containing aggregates in the membrane. Notably, transmitted light images indicated that the formation of large aggregates led to a pinch-off of small vesicles, a mechanism, which probably limits the growth of aggregates and induces membrane leakage.