Body size‐dependent responses of a marine fish assemblage to climate change and fishing over a century‐long scale

Commercial fishing and climate change have influenced the composition of marine fish assemblages worldwide, but we require a better understanding of their relative influence on long‐term changes in species abundance and body‐size distributions. In this study, we investigated long‐term (1911–2007) variability within a demersal fish assemblage in the western English Channel. The region has been subject to commercial fisheries throughout most of the past century, and has undergone interannual changes in sea temperature of over 2.0 °C. We focussed on a core 30 species that comprised 99% of total individuals sampled in the assemblage. Analyses showed that temporal trends in the abundance of smaller multispecies size classes followed thermal regime changes, but that there were persistent declines in abundance of larger size classes. Consistent with these results, larger‐growing individual species had the greatest declines in body size, and the most constant declines in abundance, while abundance changes of smaller‐growing species were more closely linked to preceding sea temperatures. Together these analyses are suggestive of dichotomous size‐dependent responses of species to long‐term climate change and commercial fishing over a century scale. Small species had rapid responses to the prevailing thermal environment, suggesting their life history traits predisposed populations to respond quickly to changing climates. Larger species declined in abundance and size, reflecting expectations from sustained size‐selective overharvesting. These results demonstrate the importance of considering species traits when developing indicators of human and climatic impacts on marine fauna.     

Conflicting effects of woody debris on stream fish populations: implications for management

1. Coarse woody debris (CWD) in stream channels causes changes in flow, sedimentation and ratios of pool to riffle areas. There is a consensus among fishery managers and scientists that CWD is beneficial to stream fish communities because of its enhancement of habitat diversity, invertebrate production and cover. Our hypothesis was that CWD accumulation or introduction would not increase in‐stream habitat capacity for all species and their ontogenic stages at reach and stream scales. 2. The study used a system of gravel‐bed streams with naturally dynamic CWD accumulations and a fish community consisting of Salmo trutta, Cotttus gobio, Phoxinus phoxinus, Lampetra cf planeri, Nemacheilus barbatulus and Anguilla anguilla. Cotttus gobio and L. cf planeri are protected by an EU Directive and S. trutta is exploited for angling. Riffles, pools and CWD matrices, considered as the basic habitat/spatial units of channel structure, were sampled separately and abundance of each fish species quantified seasonally at each spatial scale. 3. Multiple‐pass electric fishing techniques were used. Capture efficiencies were calculated for species, habitat and season. Areal densities (number m^?2) were compared for habitat types and season using nonparametric anova . Canonical analysis and stepwise multiple regression were used to show the most influential physical variables on fish density. Densities were also compared by unit volume (numbers m^?3) for pools and CWD matrices to investigate direct three‐dimensional use for cover. Reach‐scale densities for each fish species in relation to habitat composition were made using Spearman rank correlation of habitat‐scale densities with proportionate areas of the different habitat units in the reach. 4. Habitat‐scale densities of bullheads and age 0+ trout were negatively correlated with depth and CWD areas for some seasons. Densities of lampreys, older trout, eels and minnows were positively correlated with depth in some seasons. Water depth had the most consistent influence on fish abundance at the habitat unit scale. Three‐dimensional comparisons of pools and CWD matrices indicated that only trout older than 1+ may use CWD habitats as cover. 5. Reach‐scale densities of 0+ trout and bullheads were significantly correlated with proportion of riffle area and negatively with CWD and combined CWD‐pool habitat area in the reach. Densities of older trout, large eels and lampreys were positively correlated with CWD area and combined CWD‐pool area in some seasons. Inundation of riffles caused by impoundment upstream of CWD accumulations reduced spawning habitat for trout, bullheads, brook lampreys, minnows and stone loach. A trade‐off was an increase in refugia for older trout, minnows and eels. 6. Coarse woody debris accumulation in streams is not beneficial to all species or ontogenic stages in a mixed species population and could severely limit essential habitat areas for some species. Thus, physical manipulation of channels should be implemented only after a thorough study of the habitat relationships of all species present, especially where protected species coexist with target species. The relative importance of in‐stream morphological changes depends on the spatial and temporal scale of the species life histories.     

The V<Subscript>H</Subscript> gene repertoire of splenic B cells and somatic hypermutation in systemic lupus erythematosus

In systemic lupus erythematosus (SLE) it has been hypothesized that self-reactive B cells arise from virgin B cells that express low-affinity, nonpathogenic germline V genes that are cross-reactive for self and microbial antigens, which convert to high-affinity autoantibodies via somatic hypermutation. The aim of the present study was to determine whether the V_H family repertoire and pattern of somatic hypermutation in germinal centre (GC) B cells deviates from normal in SLE. Rearranged immunoglobulin V_H genes were cloned and sequenced from GCs of a SLE patient's spleen. From these data the GC V gene repertoire and the pattern of somatic mutation during the proliferation of B-cell clones were determined. The results highlighted a bias in V_H5 gene family usage, previously unreported in SLE, and under-representation of the V_H1 family, which is expressed in 20–30% of IgM⁺ B cells of healthy adults and confirmed a defect in negative selection. This is the first study of the splenic GC response in human SLE.     

Effects of overhead canopy on macroinvertebrate production in a Utah stream

SUMMARY. 1. Macroinvertebrate abundance and production were compared between an open and shaded site of a stream in the Wasatch Mountains, Utah. Mean biomass was significantly higher at the open site for midges (Chironomidae), 4.6×; Baetis bicaudatus , 5.7×; Baetis tricaudatus , 2.3×; Drunella coloradensis , 12× and Cinygmula sp., 1.6×, Abundance of most other macroinvertebrates (except black flies: Simuliidae) was also greater at the open site, but differences were not significant. Black fly biomass was 1.7× greater at the shaded site.
2. Seasonal production, estimated by the size-frequency and instantaneous growth rate methods, was greater at the open site than the shaded site for most taxa (except black flies) and reflected differences in standing crops between the sites rather than differences in rate of growth. Excluding black flies, production at the open site was twice as high as at the shaded site.
3. The greater abundance and production of most invertebrate taxa at the open site is probably associated with either higher quality food (algae and algal detritus), or a phototactic attraction to sunlit areas.
4. Sampling of large cobbles was an efficient method of sampling all taxa except Cinygmula sp. which was more abundant on smaller substrate particles.     

Feeding and Digestion in Suspension-Feeding Bivalve Molluscs: The Relevance of Physiological Compensations

SYNOPSIS. Intertidal suspension-feeding bivalves face reductionsin the time available for feeding proportional to the durationof aerial exposure. Such individuals do not compensate by increasingtheir rates of feeding during immersion. Simulations of feedingbehaviour, in terms of the energetic balance between the costsand the gains of changes in feeding rate, suggest that variationfrom the rates characteristic of the sublittoral condition wouldnot enhance net energy gain for intertidal individuals. Thesefindings are consistent with evidence of potential food limitationin the natural sublittoral habitat. Nevertheless, hydrodynamicfactors may enhance the supply of food on the shore, so amelioratingthe disadvantages of reduced feeding time. In addition, potentialphysiological compensations for reduced dietary quality includechanges in gut residence time, the volume of gut occupied fordigestion and (possibly) also in the provision of appropriatedigestive enzymes. However, these compensations require daysor weeks and are inappropriate on tidal time scales.