Fueling Plankton Production by a Meandering Frontal Jet: A Case Study for the Alboran Sea (Western Mediterranean)

A three dimensional biophysical model was employed to illustrate the biological impacts of a meandering frontal jet, in terms of efficiency and persistency of the autotrophic frontal production, in marginal and semi-enclosed seas. We used the Alboran Sea of the Western Mediterranean as a case study. Here, a frontal jet with a width of 15–20 km, characterized by the relatively low density Atlantic water mass, flows eastward within the upper 100 m as a marked meandering current around the western and the eastern anticyclonic gyres prior to its attachment to the North African shelf/slope topography of the Algerian basin. Its inherent nonlinearity leads to the development of a strong ageostrophic cross-frontal circulation that supplies nutrients into the nutrient-starved euphotic layer and stimulates phytoplankton growth along the jet. Biological production is larger in the western part of the basin and decreases eastwards with the gradual weakening of the jet. The higher production at the subsurface levels suggests that the Alboran Sea is likely more productive than predicted by the satellite chlorophyll data. The Mediterranean water mass away from the jet and the interiors of the western and eastern anticyclonic gyres remain unproductive.     

Rapid and Efficient Synthesis of Peptides Containing α,α-dialkylamino acids employing KOBt

Summary Several Fmoc-α,α-dialkylamino acids and their acid chlorides have been prepared, isolated and characterised. The synthesis of peptides containing sterically hindered dialkylamino acids has been accomplished using acid chloride/KOBt in dichloromethane. The yields as well as the purity of the peptides were satistactory.     

Reversal of abscisic acid-inhibited betacyanin synthesis by phenolic compounds in Amaranthus caudatus seedlings

Abscisic acid inhibits light-induced betacyanin synthesis in Amaranthus caudatus seedlings. Kinetin antagonizes ABA action and restores betacyanin synthesis. Similarly, phenolic compounds also antagonize ABA action and restore the synthesis of betacyanin. When present together phenolic compounds have an additive effect with kinetin in restoring ABA-inhibited betacyanin synthesis.     

Combinations of turns in proteins.

We observed that beta- and gamma-turns in protein structure may be associated as peptides representing combinations of turns that span between nine and 26 amino acid residues along the polypeptide backbone chain and often correspond to loops in the protein structure. Around 475 peptides resulted from the analysis of a non-redundant data set corresponding to 248 protein crystal structures selected from the Protein Data Bank. Nearly 40% protein chains are associated with two or more peptides and the peptides with nine and 10 amino acid residues are more frequent. A maximum of four distinct peptides varying in number of amino acid residues were observed in at least 10 proteins along the same protein chain. Nearly 80% peptides comprise type IV beta-turns that are associated with irregular dihedral angle values suggesting this may be important for the conformational diversity associated with the loops in proteins. In general, predominant interactions that possibly stabilize these peptides involve main-chain and side-chain interactions with solvent, in addition to hydrogen bond, salt-bridge and non-bonded interactions. Majority of the peptides were observed in hydrolase, oxidoreductase, transferase, serine proteinase/inhibitor complex, electron transport/electron transfer and lyase proteins.     

Evaluation of Sesbania speciosa as a green manure for lowland rice in the dry zone,Sri Lanka

Sri Lankan rice farmers rarely practise green manuring and they depend mostly on chemical fertilizers for the nutrient requirement of their crops. With the removal of government subsidy on fertilizers since 1990, they are now faced with the dilemma of meeting the cost of production to sustain previous yield targets. Therefore the present study devotes to evaluate alternative cheaper nutrient sources like green manures for rice. Results of recent work in Sri Lanka have shown that Sesbania speciosa Taub. ex Engl. is a promising green manure for lowland rice in the dry zone. It was evaluated to adopt a suitable green manuring system for rice. Its year-round biomass production, nutrient accumulation during the vegetative growth and nitrogen fixation were monitored. Field trials were conducted to investigate its ability to suppress weed growth when grown during fallow periods and its contribution to soil fertility and effect on rice yield. Highest biomass of around 100 g dry matter per plant, was achieved when S. speciosa was seeded in August and harvested at flowering in November. When this was planted during a fallow period at a spacing of 0.25×0.25 m (16 plants m^-2), percentage weed reduction was as much as 40%. Its N₂ fixation activity was similar to that of S. sesban (L.) Merr., Nitrogen concentration in S. speciosa increased until 70 days after establishment and then decreased towards flowering. Phosphorus and K accumulation was also effective during this period. Therefore suitable time for soil-incorporation of S. speciosa is around 70 days after establishment. S. speciosa-manured and chemically fertilized rice crops were comparable in terms of grain yield, indicating the effective nutrient supplying potential of this green manure. Straw biomass was significantly high under S. speciosa, because of the high N-allocation to vegetative growth of rice under this. This evaluation shows that S. speciosa not only supplies N, but is also an effective and complete supplier of other nutrients for rice. A scheme to introduce this into rice production system is proposed, where S. speciosa is seeded/broadcast two weeks before crop harvest (around January) in Maha (major) season as well as Yala (minor) season (around June) so that its biomass can be incorporated into soil during land preparation of subsequent seasons.     

Cholecystokinin-induced secretion and synthesis of amylase and cationic trypsinogen by pancreatic acini isolated from rats given an ethanol diet

Effects of chronic alcohol intake on secretion and synthesis of amylase and cationic trypsinogen (CT) were studied with pancreatic acini isolated from male Sprague-Dawley rats fed a Lieber-DeCarli ethanol or control diet for 30 days. Pancreatic acini were incubated in a media containing increasing concentrations of cholecystokinin octapeptide (CCK-8: 0-1000pM) followed by addition of [3H]leucine. Amylase and CT secreted in the media and those labeled in acini were quantitated. Basal and CCK-stimulated secretion of CT was not different in alcoholic and control groups. On the other hand, a dose-response curve of CCK-stimulated amylase secretion from alcoholic acini was markedly reduced with both basal and maximal secretion decreased to only 40% of controls. Basal incorporation of [3H]leucine into amylase was reduced by 70% in alcoholic acini compared to controls while that into CT was not different in the two groups. CCK-8 exhibited a biphasic effect on [3H]leucine incorporation into both enzymes in alcoholic acini: low concentrations of CCK-8 (less than 100pM) increased the incorporation whereas high concentrations (greater than 100pM) decreased it. However, in control acini, CCK-8 induced progressive suppression of the incorporation into these enzymes, the pattern of which was similar to that previously observed in fasted rats (Am. J. Physiol. 241:G116-G112, 1981). This difference in the response pattern resulted in significantly higher rates of CCK-8 induced incorporation into CT in alcoholic acini. These results suggest that the differences observed may possibly be attributable not only to alcohol intake but also to the differences in carbohydrate intake and in temporal patterns of diet consumption.     

The prevalence of non-indigenous species in southern California embayments and their effects on benthic macroinvertebrate communities

The prevalence of non-indigenous species (NIS) in southern California embayments was assessed from 123 Van Veen grab samples collected in nine bays and harbors during the summer of 1998. NIS occurred in all but two samples. They accounted for only 4.3% of the 633 taxa but contributed 27.5% of the abundance. There was no significant difference in the proportion of NIS abundance among ports harboring large vessels, small boat marinas, and areas where boats were not moored. Three species accounted for 92% of the NIS abundance: a spionid polychaete worm Pseudopolydora paucibranchiata, a mytilid bivalve Musculista senhousia, and a semelid bivalve Theora ubrica. The NIS did not appear to have a negative impact at the overall community level since NIS abundance was positively correlated with the abundance and richness of other species. This may be due to biogenic structures built by P. paucibranchiata and M. senhousia that enhance the abundances of other macrofauna.     

Multidisciplinary Approaches to Natural Resource Management

Counter-acting forces to increase rural production and/or its efficiency, and to sustain an ecosystem now recognised to be under increasing and destructive pressures have created exigencies in achieving balanced natural resource management (NRM). Nowhere is this more apparent than in the management of the Murray Darling System in south-eastern Australia. All actions affecting natural resources impinge on the ecosystems that support those resources, the economy based on them, and the human society and culture connected to them. Change is best managed with the cooperation of those most affected. If NRM is to be achieved through informed community decisions, there is a need for a multidisciplinary process, drawing on specialist (intra-disciplinary) expertise, and a requirement to pull the resultant knowledge into an integrated form which supports decision-making at the management and community level. We propose a framework that identifies tasks necessary to support community decision-making and inject specialist technical knowledge into the process. For complex NRM issues, it is likely that there is insufficient information in one or more disciplines to support a strong decision. Where possible, this should lead to the interposition of targeted pilot trials, based on principles of adaptive management, prior to the final assessment and (presumedly) management plans. These ‘management experiments’ follow a similar path to specialist hypotheses and measurements (based on the same management intervention) followed by an integrated assessment. It appears that identification of, and engagement with, components of the community, and analytical techniques to support integrated assessment are two major areas in which new knowledge is urgently needed.     

Involvement of oxyradicals in promotion/inhibition of expansion growth in cucumber cotyledons

Cytokinin-induced expansion growth of cucumber cotyledons and its interaction with UV-B (280-320 nm) was studied with reference to oxyradicals. UV-B radiation enhanced the level of oxyradicals in the cotyledons measured by EPR spectroscopy. Cytokinin promoted expansion growth was inhibited by UV-B radiation. Cytokinins reduced the level of oxyradicals in dark grown cotyledons, while promoting growth. Overproduction of oxyradicals by UV-B could not be fully accounted for the inhibition of growth of cotyledons, since quenching of radicals by cytokinins did not fully restore inhibition of growth.     

The automatic detection of known beta-propeller structural motifs from protein tertiary structure

Following our previous work on the analysis of 'structural plasticity' associated with the beta-propeller structural motifs, we have now developed a simple method that can automatically detect all the known beta-propellers in protein tertiary structure, given a list of Protein Data Bank (PDB) codes as input to the computer program. Our beta-propeller detection (BPD) method identifies the location of beta-propellers in the protein structure, specifies the beta-propeller type, the beta-sheet associated beta-strand pattern and the structurally similar beta-propellers observed in other proteins. When tested on 21,566 proteins in the PDB, the BPD method was capable of correctly identifying all the known 245 beta-propellers described in the structural classification of proteins (SCOP) with the number of false positives detected being less than 0.2%. Forty-one false positives were detected that correspond to eight known protein families. When compared with some of the popular web-based programs that can automatically detect 'structural similarities' between the query and target proteins, our method has the advantage of also being capable of detecting beta-propellers associated with 'structural plasticity' and in situations where the target and query proteins differ in amino acid sequence length.