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51.
Howard MA Krause K Khawaja N Massat N Zelaya F Schumann G Huggins JP Vennart W Williams SC Renton TF 《PloS one》2011,6(2):e17096
Development of treatments for acute and chronic pain conditions remains a challenge, with an unmet need for improved sensitivity and reproducibility in measuring pain in patients. Here we used pulsed-continuous arterial spin-labelling [pCASL], a relatively novel perfusion magnetic-resonance imaging technique, in conjunction with a commonly-used post-surgical model, to measure changes in regional cerebral blood flow [rCBF] associated with the experience of being in ongoing pain. We demonstrate repeatable, reproducible assessment of ongoing pain that is independent of patient self-report. In a cross-over trial design, 16 participants requiring bilateral removal of lower-jaw third molars underwent pain-free pre-surgical pCASL scans. Following extraction of either left or right tooth, repeat scans were acquired during post-operative ongoing pain. When pain-free following surgical recovery, the pre/post-surgical scanning procedure was repeated for the remaining tooth. Voxelwise statistical comparison of pre and post-surgical scans was performed to reveal rCBF changes representing ongoing pain. In addition, rCBF values in predefined pain and control brain regions were obtained. rCBF increases (5-10%) representing post-surgical ongoing pain were identified bilaterally in a network including primary and secondary somatosensory, insula and cingulate cortices, thalamus, amygdala, hippocampus, midbrain and brainstem (including trigeminal ganglion and principal-sensory nucleus), but not in a control region in visual cortex. rCBF changes were reproducible, with no rCBF differences identified across scans within-session or between post-surgical pain sessions. This is the first report of the cerebral representation of ongoing post-surgical pain without the need for exogenous tracers. Regions of rCBF increases are plausibly associated with pain and the technique is reproducible, providing an attractive proposition for testing interventions for on-going pain that do not rely solely on patient self-report. Our findings have the potential to improve our understanding of the cerebral representation of persistent painful conditions, leading to improved identification of specific patient sub-types and implementation of mechanism-based treatments. 相似文献
52.
Böhm E Sturm GJ Weiglhofer I Sandig H Shichijo M McNamee A Pease JE Kollroser M Peskar BA Heinemann A 《The Journal of biological chemistry》2004,279(9):7663-7670
Thromboxane (TX) A(2), a cyclooxygenase-derived mediator involved in allergic responses, is rapidly converted in vivo to a stable metabolite, 11-dehydro-TXB(2), which is considered to be biologically inactive. In this study, we found that 11-dehydro-TXB(2), but not the TXA(2) analogue U46,619 or TXB(2), activated eosinophils and basophils, as assayed by flow cytometric shape change. 11-Dehydro-TXB(2) was also chemotactic for eosinophils but did not induce, nor inhibit, platelet aggregation. Chemoattractant receptor-homologous molecule expressed on TH2 cells (CRTH2) is an important chemoattractant receptor expressed by eosinophils, basophils, and TH2 lymphocytes, and prostaglandin (PG)D(2) has been shown to be its principal ligand. 11-Dehydro-TXB(2) induced calcium flux mainly from intracellular stores in eosinophils, and this response was desensitized after stimulation with PGD(2) but not other eosinophil chemoattractants. Shape change responses of eosinophils and basophils to 11-dehydro-TXB(2) were inhibited by the thromboxane (TP)/CRTH2 receptor antagonist ramatroban, but not the selective TP antagonist SQ29,548, and were insensitive to pertussis toxin. The phospholipase C inhibitor U73,122 attenuated both 11-dehydro-TXB(2)- and PGD(2)-induced shape change. 11-Dehydro-TXB(2) also induced the chemotaxis of BaF/3 cells transfected with hCRTH2 but not naive BaF/3 cells. At a threshold concentration, 11-dehydro-TXB(2) had no antagonistic effect on CRTH2-mediated responses as induced by PGD2. These data show that 11-dehydro-TXB(2) is a full agonist of the CRTH2 receptor and hence might cause CRTH2 activation in cellular contexts where PGD-synthase is not present. Given its production in the allergic lung, antagonism of the 11-dehydro-TXB(2)/CRTH2axis may be of therapeutic relevance. 相似文献
53.
Variam Ullas Jean kumar Ömer Poyraz Shalini Saxena Robert Schnell Perumal Yogeeswari Gunter Schneider Dharmarajan Sriram 《Bioorganic & medicinal chemistry letters》2013,23(5):1182-1186
Cysteine biosynthesis in Mycobacterium tuberculosis (MTB) is crucial for this pathogen to combat oxidative stress and for long term survival in the host. Hence inhibition of this pathway is attractive for developing novel drugs against tuberculosis. In the present study, the crystal structure of the mycobacterial enzyme O-acetylserine sulfhydrylase CysK1 bound to an oligopeptide inhibitor was used as a framework for virtual screening of the BITS-Pilani in-house database to identify new scaffolds as CysK1 inhibitors. Thirty compounds were synthesized and evaluated in vitro for their ability to inhibit CysK1, activity against M. tuberculosis and cytotoxicity as steps towards the derivation of structure–activity relationships (SAR) and lead optimization. Compound 8-nitro-4-(2-(trifluoromethyl)phenyl)-4,4a-dihydro-2H-pyrimido[5,4-e]thiazolo[3,2-a]pyrimidine-2,5(3H)-dione (4n) emerged as the most promising lead with an IC50 of 17.7 μM for purified CysK1 and MIC of 7.6 μM for M. tuberculosis, with little or no cytotoxicity (>50 μM). 相似文献
54.
Roland T. Ullrich Thomas Zander Bernd Neumaier Mirjam Koker Takeshi Shimamura Yannic Waerzeggers Christa L. Borgman Samir Tawadros Hongfeng Li Martin L. Sos Heiko Backes Geoffrey I. Shapiro Jürgen Wolf Andreas H. Jacobs Roman K. Thomas Alexandra Winkeler 《PloS one》2008,3(12)
Background
Inhibition of the epidermal growth factor receptor (EGFR) has shown clinical success in patients with advanced non-small cell lung cancer (NSCLC). Somatic mutations of EGFR were found in lung adenocarcinoma that lead to exquisite dependency on EGFR signaling; thus patients with EGFR-mutant tumors are at high chance of response to EGFR inhibitors. However, imaging approaches affording early identification of tumor response in EGFR-dependent carcinomas have so far been lacking.Methodology/Principal Findings
We performed a systematic comparison of 3′-Deoxy-3′-[18F]-fluoro-L-thymidine ([18F]FLT) and 2-[18F]-fluoro-2-deoxy-D-glucose ([18F]FDG) positron emission tomography (PET) for their potential to identify response to EGFR inhibitors in a model of EGFR-dependent lung cancer early after treatment initiation. While erlotinib-sensitive tumors exhibited a striking and reproducible decrease in [18F]FLT uptake after only two days of treatment, [18F]FDG PET based imaging revealed no consistent reduction in tumor glucose uptake. In sensitive tumors, a decrease in [18F]FLT PET but not [18F]FDG PET uptake correlated with cell cycle arrest and induction of apoptosis. The reduction in [18F]FLT PET signal at day 2 translated into dramatic tumor shrinkage four days later. Furthermore, the specificity of our results is confirmed by the complete lack of [18F]FLT PET response of tumors expressing the T790M erlotinib resistance mutation of EGFR.Conclusions
[18F]FLT PET enables robust identification of erlotinib response in EGFR-dependent tumors at a very early stage. [18F]FLT PET imaging may represent an appropriate method for early prediction of response to EGFR TKI treatment in patients with NSCLC. 相似文献55.
Daniela M. Tomazela Gunter Ebeling Marcos N. Eberlin Jairton Dupont 《Inorganica chimica acta》2004,357(8):2349-2357
Electrospray (ESI) mass spectra analysis of acetonitrile solutions of a series of neutral chloro dimers, pincer type, and monomeric palladacycles has enabled the detection of several of their derived ionic species. The monometallic cationic complexes Pd[κ1-C,κ1-N,κ1-S-C(CH3S-2-C6H4)C(Cl)CH2N(CH3)2]+ (1a) and [Pd[κ1-C,κ1-N,κ1-S-C(CH3S-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)]+ (1b) and the bimetallic cationic complex [κ1-C,κ1-N,κ1-S-C(CH3S-2-C6H4)C(Cl)CH2N(CH3)2]Pd-Cl-Pd[κ1-C,κ1-N,κ1-S-C(CH3S-2-C6H4)C(Cl)CH2N(CH3)2]+ (1c) were detected from an acetonitrile solution of the pincer palladacycles Pd[κ1-C,κ1-N,κ1-S-C(CH3S-2-C6H4)C(Cl)CH2N(CH3)2](Cl) 1. For the dimeric compounds {Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](μ-Cl)}2 (2, Y=H and 3, CF3), highly electronically unsaturated palladacycles [Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2]+ (2d, 3d) and their mono and di-acetonitrile adducts, namely, [Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)]+ (2e, 3e) and [Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)2]+ (2f and 3f) were detected together with the bimetallic complex [Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2]-Cl-Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N](CH3)2]+ (2a, 3a) and its acetonitrile adducts [κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)Pd-Cl-Pd[ κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2]+ (2b, 3b) and [κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)Pd-Cl-Pd[κ1-C, κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2(CH3CN)]+ (2c, 3c). The dimeric palladacycle {Pd[κ1-C,κ1-N-C(CH3O-2-C6H4)C(Cl)CH2N(CH3)2](μ-Cl)}2 (4) is unique as it behaves as a pincer type compound with the OCH3 substituent acting as an intramolecular coordinating group which prevents acetonitrile full coordination, thus forming the cationic complexes [(C6H4(o-CH3O)CC(Cl)CH2N(CH3)2-κO,κC,κN)Pd]+ (4b), [(C6H4(o-CH3O)CC(Cl)CH2N(CH3)2- κO,κC,κN)Pd(CH3CN)]+ (4c) and [(C6H4 (o-MeO)CC(Cl)CH2N(CH3)2-κO, κC,κN)Pd-Cl-Pd(C6H4(o-CH3O)CC(Cl)CH2N(CH3)2-κO,κC,κN)]+ (4a). ESI-MS spectra analysis of acetonitrile solutions of the monomeric palladacycles Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](Cl)(Py) (5, Y=H and 6, Y=CF3) allows the detection of some of the same species observed in the spectra of the dimeric palladacycles, i.e., monometallic cationic 2d-3d, 2e-3e and {Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](Py)}+ (5a, 6a) and {Pd[κ1-C,κ1-N-C(Y-2-C6H4)C(Cl)CH2N(CH3)2](CH3CN)(Py)}+ (5b, 6b) and the bimetallic 2a, 3a, 2b, 3b, 2c and 3c. In all cationic complexes detected by ESI-MS, the cyclometallated moiety was intact indicating the high stability of the four or six electron anionic chelate ligands. The anionic (chloride) or neutral (pyridine) ligands are, however, easily replaced by the acetonitrile solvent. 相似文献
56.
Jochen Baßler Yasar Luqman Ahmed Martina Kallas Markus Kornprobst Fabiola R. Calviño Marén Gnädig Matthias Thoms Gunter Stier Sherif Ismail Satyavati Kharde Nestor Castillo Sabine Griesel Sonja Bastuck Bettina Bradatsch Emma Thomson Dirk Flemming Irmgard Sinning Ed Hurt 《Protein science : a publication of the Protein Society》2017,26(2):327-342
Ribosome biogenesis in eukaryotic cells is a highly dynamic and complex process innately linked to cell proliferation. The assembly of ribosomes is driven by a myriad of biogenesis factors that shape pre‐ribosomal particles by processing and folding the ribosomal RNA and incorporating ribosomal proteins. Biochemical approaches allowed the isolation and characterization of pre‐ribosomal particles from Saccharomyces cerevisiae, which lead to a spatiotemporal map of biogenesis intermediates along the path from the nucleolus to the cytoplasm. Here, we cloned almost the entire set (~180) of ribosome biogenesis factors from the thermophilic fungus Chaetomium thermophilum in order to perform an in‐depth analysis of their protein–protein interaction network as well as exploring the suitability of these thermostable proteins for structural studies. First, we performed a systematic screen, testing about 80 factors for crystallization and structure determination. Next, we performed a yeast 2‐hybrid analysis and tested about 32,000 binary combinations, which identified more than 1000 protein–protein contacts between the thermophilic ribosome assembly factors. To exemplary verify several of these interactions, we performed biochemical reconstitution with the focus on the interaction network between 90S pre‐ribosome factors forming the ctUTP‐A and ctUTP‐B modules, and the Brix‐domain containing assembly factors of the pre‐60S subunit. Our work provides a rich resource for biochemical reconstitution and structural analyses of the conserved ribosome assembly machinery from a eukaryotic thermophile. 相似文献
57.
Aguilar AL Piskol R Beitzinger M Zhu JY Kruspe D Aszodi A Moser M Englert C Meister G 《FEBS letters》2010,584(21):4426-4434
microRNAs (miRNAs) are small non-coding RNAs with fundamental roles in the regulation of gene expression. miRNAs assemble with Argonaute (Ago) proteins to miRNA-protein complexes (miRNPs), which interact with distinct binding sites on mRNAs and regulate gene expression. Specific miRNAs are key regulators of tissue and organ development and it has been shown in mammals that miRNAs are also involved in the pathogenesis of many diseases including cancer. Here, we have characterized the miRNA expression profile of the developing murine genitourinary system. Using a computational approach, we have identified several miRNAs that are specific for the analyzed tissues or the developmental stage. Our comprehensive miRNA expression atlas of the developing genitourinary system forms an invaluable basis for further functional in vivo studies. 相似文献
58.
Sabine C. Mueller Bj?rn Sommer Christina Backes Jan Haas Benjamin Meder Eckart Meese Andreas Keller 《The Journal of biological chemistry》2016,291(4):1582-1590
Understanding the role of genetics in disease has become a central part of medical research. Non-synonymous single nucleotide variants (nsSNVs) in coding regions of human genes frequently lead to pathological phenotypes. Beyond single variations, the individual combination of nsSNVs may add to pathogenic processes. We developed a multiscale pipeline to systematically analyze the existence of quantitative effects of multiple nsSNVs and gene combinations in single individuals on pathogenicity. Based on this pipeline, we detected in a data set of 842 nsSNVs discovered in 76 genes related to cardiomyopathies, associated nsSNV combinations in seven genes present in at least 70% of all 639 patient samples, but not in a control cohort of healthy humans. Structural analyses of these revealed primarily an influence on the protein stability. For amino acid substitutions located at the protein surface, we generally observed a proximity to putative binding pockets. To computationally analyze cumulative effects and their impact, pathogenicity methods are currently being developed. Our approach supports this process, as shown on the example of a cardiac phenotype but can be likewise applied to other diseases such as cancer. 相似文献
59.
Malatesta M Scassellati C Meister G Plöttner O Bühler D Sowa G Martin TE Keidel E Fischer U Fakan S 《Experimental cell research》2004,292(2):312-321
Mutations in the survival of motor neuron (SMN) gene are the major cause of spinal muscular atrophy (SMA). The SMN gene encodes a 38-kDa protein that localises in the cytoplasm and in nuclear bodies termed Gemini of coiled bodies (gems). When visualised by immunofluorescence microscopy, gems often appeared either in close proximity to, or entirely overlapping with coiled (Cajal) bodies (CBs) implying a possible functional relationship between these nuclear domains. With the aim of identifying subnuclear compartments corresponding to gems, we have investigated the intranuclear localisation of SMN and of its interacting protein Gemin2 by immunoelectron microscopy in cultured cells and in liver cells of hibernating dormouse. These antigens are highly enriched in round-shaped electron-dense fibro-granular clusters (EFGCs), which also display a biochemical composition similar to gems visualised by immunofluorescence microscopy. Our data reveal a novel SMN/Gemin2 containing nuclear domain and support the idea that it represents the structural counterpart of gems seen in the light microscope. 相似文献
60.
Robert A Philibert Brandan Penaluna Teresa White Sarah Shires Tracy Gunter Jill Liesveld Cheryl Erwin Nancy Hollenbeck Terry Osborn 《Epigenetics》2014,9(9):1212-1219
Alcoholism has a profound impact on millions of people throughout the world. However, the ability to determine if a patient needs treatment is hindered by reliance on self-reporting and the clinician’s capability to monitor the patient’s response to treatment is challenged by the lack of reliable biomarkers. Using a genome-wide approach, we have previously shown that chronic alcohol use is associated with methylation changes in DNA from human cell lines. In this pilot study, we now examine DNA methylation in peripheral mononuclear cell DNA gathered from subjects as they enter and leave short-term alcohol treatment. When compared with abstinent controls, subjects with heavy alcohol use show widespread changes in DNA methylation that have a tendency to reverse with abstinence. Pathway analysis demonstrates that these changes map to gene networks involved in apoptosis. There is no significant overlap of the alcohol signature with the methylation signature previously derived for smoking. We conclude that DNA methylation may have future clinical utility in assessing acute alcohol use status and monitoring treatment response. 相似文献