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41.
42.
Syed RA Gardezi 《Archives Of Phytopathology And Plant Protection》2013,46(2):113-122
Six species of mushrooms allied to the Family Sclerodermataceae, Lycoperdaceae and Geastraceae have been described for the first time from Azad Jammu and Kashmir. These are Scleroderma aurantium, Calvatia verrucosia sp. nov., Lycoperdon pedicellaton sp. nov. L. sphaericon sp. nov., L. echinulaton sp. nov., and Geastrum heptaplex sp. nov. 相似文献
43.
Amy L Roberts Ellen RA Thomas Shriram Bhosle Laurence Game Olga Obraztsova Timothy J Aitman Timothy J Vyse Benjamin Rhodes 《Arthritis research & therapy》2014,16(3):R114
Introduction
The majority of the genetic variance of systemic lupus erythematosus (SLE) remains unexplained by the common disease-common variant hypothesis. Rare variants, which are not detectable by genome-wide association studies because of their low frequencies, are predicted to explain part of this ”missing heritability.” However, recent studies identifying rare variants within known disease-susceptibility loci have failed to show genetic associations because of their extremely low frequencies, leading to the questioning of the contribution of rare variants to disease susceptibility. A common (minor allele frequency = 17.4% in cases) nonsynonymous coding variant rs1143679 (R77H) in ITGAM (CD11b), which forms half of the heterodimeric integrin receptor, complement receptor 3 (CR3), is robustly associated with SLE and has been shown to impair CR3-mediated phagocytosis.Methods
We resequenced ITGAM in 73 SLE cases and identified two previously unidentified, case-specific nonsynonymous variants, F941V and G1145S. Both variants were genotyped in 2,107 and 949 additional SLE cases, respectively, to estimate their frequencies in a disease population. An in vitro model was used to assess the impact of F941V and G1145S, together with two nonsynonymous ITGAM polymorphisms, A858V (rs1143683) and M441T (rs11861251), on CR3-mediated phagocytosis. A paired two-tailed t test was used to compare the phagocytic capabilities of each variant with that of wild-type CR3.Results
Both rare variants, F941V and G1145S, significantly impair CR3-mediated phagocytosis in an in vitro model (61% reduction, P = 0.006; 26% reduction, P = 0.0232). However, neither of the common variants, M441T and A858V, had an effect on phagocytosis. Neither rare variant was observed again in the genotyping of additional SLE cases, suggesting that there frequencies are extremely low.Conclusions
Our results add further evidence to the functional importance of ITGAM in SLE pathogenesis through impaired phagocytosis. Additionally, this study provides a new example of the identification of rare variants in common-allele-associated loci, which, because of their extremely low frequencies, are not statistically associated. However, the demonstration of their functional effects adds support to their contribution to disease risk, and questions the current notion of dismissing the contribution of very rare variants on purely statistical analyses. 相似文献44.
Teng E Leong KP Li HH Thong B Koh ET Loi PL Zhao Y Tan EK;TTSH RA Study Group 《DNA and cell biology》2012,31(4):607-610
A genome-wide association study in Japan identified the C-C chemokine receptor type 6 gene (CCR6) as associated with rheumatoid arthritis (RA). This finding has not been validated in other Asian populations. A case-control study involving 996 subjects, comprising 440 controls and 556 RA patients, was done to determine their anticyclic citrullinated peptide (anti-CCP) antibody status and CCR6 polymorphism (rs3093024) genotype. Three hundred eighty-seven patients were anti-CCP positive and 153 anti-CCP negative. Logistic regression showed that allele A was likely to increase the risk of developing RA among females via a recessive model (odds ratio [OR]=1.55, 95% confidence interval [CI]=1.01, 2.39), whereas the risk effect appeared to be reduced among males via an additive model (OR=0.60, 95% CI=0.42, 0.85). Considering only subjects who are anti-CCP positive, allele A increased RA risk among females via a recessive model (OR=1.68, 95% CI=1.07, 2.64) but decreased the risk among males via an additive model (OR=0.59, 95% CI=0.39, 0.89). We showed that CCR6 polymorphism was a risk factor among females but a protective factor among males. Functional studies are warranted to unravel the pathophysiological relevance of the gene variant and other linked variants with RA. 相似文献
45.
46.
Transgene-mediated and elicitor-induced perturbation of metabolic channeling at the entry point into the phenylpropanoid pathway 总被引:12,自引:0,他引:12
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3H-l-Phenylalanine is incorporated into a range of phenylpropanoid compounds when fed to tobacco cell cultures. A significant proportion of (3)H-trans-cinnamic acid formed from (3)H-l-phenylalanine did not equilibrate with exogenous trans-cinnamic acid and therefore may be rapidly channeled through the cinnamate 4-hydroxylase (C4H) reaction to 4-coumaric acid. Such compartmentalization of trans-cinnamic acid was not observed after elicitation or in cell cultures constitutively expressing a bean phenylalanine ammonia-lyase (PAL) transgene. Channeling between PAL and C4H was confirmed in vitro in isolated microsomes from tobacco stems or cell suspension cultures. This channeling was strongly reduced in microsomes from stems or cell cultures of transgenic PAL-overexpressing plants or after elicitation of wild-type cell cultures. Protein gel blot analysis showed that tobacco PAL1 and bean PAL were localized in both soluble and microsomal fractions, whereas tobacco PAL2 was found only in the soluble fraction. We propose that metabolic channeling of trans-cinnamic acid requires the close association of specific forms of PAL with C4H on microsomal membranes. 相似文献
47.
Three roselle, Hibiscus sabdariffa L. varieties (Sudani, Masri and White) were cultivated at three different locations to recognize the transportation ability of roselle cultivation from the narrow old valley land to broad new land in Egypt. Qena as origin in situ old land, El-Kanater as ex situ old land and Nubaria as ex situ new land were the considered locations. Six growth quantitative characters and bolls infestation by spiny bollworm, Earias insulana were evaluated. Growth characters of roselle plants were affected significantly by either variety or location. Qena region was more suitable for roselle plant growth as judged with plant height, number of branches, number of fruits and sepals dry weight, followed by Nubaria followed by El-Kanater. Whereas, plants grown at Nubaria produced more fresh sepals weight than Qena or El-Kanater grown plants. As for Sudani, Nubaria exhibited the tallest plants, with the highest number of fruits and the heaviest fresh sepals as compared with the corresponding plants in Qena or El-Kanater. Values of broad sense heritability were highest for all characters in Qena. While the number of fruits per plant had the highest heritability in all locations. Dry sepals yield had highly significant correlation with all studied characters except percentage of water loss in Qena and Nubaria. Path coefficient analysis confirmed that fresh sepals yield had the highest direct and indirect effects on dried sepals yield. Chemical constituents responsible to sepal quality tended to produce significant variations due to the changes in varieties or locations. The highest levels of anthocyanins and sugars were achieved by Sudani variety, but the highest levels of free amino acids and total soluble solids were recorded for Masri variety. Moreover, Nubaria region was the most favourable for the accumulation of more anthocyanins in the sepals of all varieties followed by Qena. Plants grown at Qena produced sepals with the highest levels of sugars, free amino acids, organic acids and total soluble solids, followed by Nubaria followed by El-Kanater plants. Infestation with spiny bollworm Earias insulana was increased from Sudani up to Masri up to White varieties. Plants grown at Nubaria had the lowest number of attacks by bolls in all varieties, followed by those at El-Kanater followed by Qena plants. Spiny bollworm infestation was positively correlated with the number of branches and dry sepals weight, but negatively correlated with sepal moisture loss and anthocyanin contents. These findings clearly indicated that the Nubaria region was considered as a promising reclaimed area suitable for roselle cultivation, especially for Sudani, the most economic variety. 相似文献
48.
Quantitative analysis of sugar constituents of glycoproteins by capillary electrophoresis 总被引:4,自引:0,他引:4
A method for quantitative analysis of monosaccharides including N-
acetylneuraminic acid derived from sialic acid-containing oligosaccharides
and glycoproteins is presented. The analysis is based on the combination of
chemical and enzymatic methods coupled with capillary electrophoretic (CE)
separation and laser-induced fluorescence (LIF) detection. The present
method utilizes a simplified acid hydrolysis procedure consisting of mild
hydrolysis (0.1 M TFA) to release sialic acid and strong acid hydrolysis
(2.0 N TFA) to produce amino and neutral sugars. Amino sugars released from
strong acid hydrolysis of oligosaccharides and glycoproteins were
reacetylated and derivatized with 8-aminopyrene-1,3,6-trisulfonate (APTS)
along with neutral sugars in the presence of sodium cyanoborohydride to
yield quantitatively the highly stable fluorescent APTS adducts. N-
acetylneuraminic acid (Neu5Ac), a major component of most mammalian
glycoproteins, was converted in a fast specific reaction by the action of
neuraminic acid aldolase (N-acylneuraminate pyruvate-lyase EC 4.1.3.3) to
N-acetylmannosamine (ManNAc) and pyruvate. ManNAc was then derivatized with
APTS in the same manner as the other monosaccharides. This method was
demonstrated for the quantitation of pure Neu5Ac and the species derived
from mild acid hydrolysis of 6'-sialyl-N- acetyllactosamine and bovine
fetuin glycan. Quantitative recovery of the N-acetylmannosamine was
obtained from a known amount of Neu5Ac in a mixture of seven other
monosaccharides or from the sialylated oligosaccharides occurring in
glycoproteins. The sequence of procedures consists of acid hydrolysis,
enzymatic conversion and APTS derivatization which produced quantitative
recovery of APTS- monosaccharide adducts. The detection limits for sugars
derivatized with APTS and detected by CE-LIF are 100 pmol for Neu5Ac and 50
pmol for the other sugars.
相似文献
49.
Actin and myosin filaments as a foundation of contractile systems are well established from ameba to man (3). Wolpert et al. (19) isolated by differential centrifugation from Amoeba proteus a motile fraction composed of filaments which moved upon the addition of ATP. Actin filaments are found in amebas (1, 12, 13) which react with vertebrate heavy meromyosin (HMM), forming arrowhead complexes as vertebrate actin (3, 9), and are prominent within the ectoplasmic tube where some of them are attached to the plasmalemma (1, 12). Thick and thin filaments possessing the morphological characteristics of myosin and actin have been obtained from isolated ameba cytoplasm (18, 19). In addition, there are filaments exhibiting ATPase activity in amebas which react with actin (12, 16, 17). However, giant ameba (Chaos-proteus) shapes are difficult to preserve, and the excellent contributions referred to above are limited by visible distortions occurring in the amebas (rounding up, pseudopods disappearing, and cellular organelles swelling) upon fixation. Achievement of normal ameboid shape in recent glycerination work (15) led us to attempt other electron microscope fixation techniques, resulting in a surprising preservation of A. proteus with a unique orientation of thick and thin filaments in the ectoplasmic region. 相似文献
50.
Phylogenetic analyses of the rbcL sequences from haptophytes and heterokont algae suggest their chloroplasts are unrelated 总被引:2,自引:0,他引:2
Using the large subunit of RuBisCo (rbcL) sequences from cyanobacteria,
proteobacteria, and diverse groups of algae and green plants, we evaluated
the plastid relationship between haptophytes and heterokont algae. The rbcL
sequences were determined from three taxa of heterokont algae
(Bumilleriopsis filiformis, Pelagomonas calceolata, and Pseudopedinella
elastica) and added to 25 published sequences to obtain a data set
comprising 1,434 unambiguously aligned sites (approximately 98% of the
total rbcL gene). Higher levels of mutational saturation in third codon
positions were observed by plotting the pairwise substitutions with and
without corrections for multiple substitutions at the same site for first
and second codon positions only and for third positions only. In accordance
with this finding phylogeny reconstructions were completed by omitting
third codon positions, thus using 956 bp in weighted-parsimony and
maximum-likelihood analyses. The midpoint-rooted phylogenies showed two
major clusters, one containing cyanobacteria, glaucocystophytes, a
phototrophic euglenoid, chlorophytes, and embryophytes (the green lineage),
the other containing proteobacteria, haptophytes, red algae, a cryptophyte,
and heterokont algae (the non-green lineage). In the nongreen lineage, the
haptophytes formed a sister group to the clade containing heterokont algae,
red algae, and the cryptophyte Guillardia theta. This branching pattern was
well supported in terms of bootstrap values in weighted- parsimony and
maximum-likelihood analyses (100% and 92%, respectively). However, the
phylogenetic relationship among red algae, heterokonts, and a cryptophyte
taxon was not especially well resolved. A four- cluster analysis was
performed to further explore the statistical significance of the
relationship between proteobacteria, red algae (including and excluding
Guillardia theta), haptophytes, and heterokont algae. This test strongly
favored the hypothesis that the heterokonts and red algae are more closely
related to each other than either is to proteobacteria or haptophytes.
Hence, this molecular study based on a plastid-encoded gene provides
additional evidence for a distant relationship between haptophytes and the
heterokont algae. It suggests an evolutionary scenario in which the
ancestor of the haptophyte lineage engulfed a phototrophic eukaryote and,
more recently, the heterokont lineage became phototrophic by engulfing a
red alga.
相似文献