Construction and characterization of two versions of bifunctional EGFP–sTRAIL fusion proteins

The extracellular portion (amino acids 95–281 or 114–281) of the human tumor necrosis factor-related apoptosis-inducing ligand (sTRAIL) was genetically linked to the C terminus of the fluoresce-enhanced green fluorescent protein variant (EGFP) to generate two versions of EGFP–sTRAIL fusion proteins, designated EGFP–sTR95 and EGFP–sTR114, respectively. The two versions of EGFP–sTRAIL fusion proteins both induce extensive apoptosis in lymphoid as well as nonlymphoid tumor cell lines. In addition, the two versions of fusion proteins retain similar fluorescence spectra to those of EGFP and have shown the specific binding to TRAIL receptor-positive cells; thus, the stained cells could be analyzed with flow cytometry. Hence, the two versions of fusion proteins represent a readily obtainable source of biologically active sTRAIL that may prove useful in exploit fully the characteristics of both the soluble TRAIL and its receptor system.     

Evidence against the role of alpha 1-adrenoceptor reserve in buffering the inhibitory effect of nifedipine on the contractility of canine vascular smooth muscle

The relationship between the postsynaptic alpha 1-adrenoceptor reserve and the sensitivity of vasoconstriction induced by alpha-adrenoceptor agonists to the dihydropyridine Ca2+ entry blocker nifedipine was investigated in isolated muscle strips of dog mesenteric artery (DMA) and saphenous vein (DSV). The amplitudes of the contractile responses of DMA induced by phenylephrine were the same as those in DSV in the presence and in the absence of extracellular Ca2+. The use of 3 x 10(-9) M phenoxybenzamine to irreversibly block the alpha 1-adrenoceptors revealed a marked difference in the size of the alpha 1-adrenoceptor reserve between DMA (40%) and DSV (7%). In spite of a larger receptor reserve, the contractile responses induced by phenylephrine in DMA were more sensitive to nifedipine compared with those in DSV. These results suggest that the postsynaptic alpha 1-adrenoceptor reserve in vascular smooth muscle, at least in DMA and DSV, does not play an important role in buffering the inhibitory effect of nifedipine on the contractile response to a full agonist of alpha 1-adrenoceptors. Other factors, such as the difference in the membrane depolarizing effect, the ability to utilize intracellular Ca2+ for contraction, and the possible existence of alpha 1-adrenoceptor subtypes, may contribute to the different inhibitory effects of nifedipine on these blood vessels.     

骨骼肌特异性敲除TβRⅡ小鼠模型的建立

目的:建立骨骼肌特异性敲除转化生长因子受体Ⅱ(TβRⅡ)小鼠模型,为进一步研究TβRⅡ在骨骼肌发育和分化中的作用奠定基础。方法:首先将TβRⅡflox/flox转基因小鼠与上游携带肌酸激酶(MCK)启动子的MCK-Cre转基因小鼠进行杂交,培育繁殖出TβRⅡflox/wt/MCK-Cre(+)双转基因小鼠。然后利用TβRⅡflox/wt/MCK-Cre(+)双转基因小鼠与TβRⅡflox/flox转基因小鼠进行杂交,繁殖培育出在骨骼肌内特异敲除TβRⅡ基因的TβRⅡflox/flox/MCK-Cre(+)小鼠。结果:利用Cre/loxP技术世界上首次成功繁殖培育出有活力的且发育正常的TβRⅡ基因敲除小鼠。     

遥感在生物多样性研究中的应用进展

随着人口的持续增长, 人类经济活动对自然资源的利用强度不断升级以及全球气候变暖, 全球物种正以前所未有的速度丧失, 生物多样性成为了全球关注的热点问题。传统生物多样性研究以地面调查方法为主, 重点关注物种或样地水平, 但无法满足景观尺度、区域尺度以及全球尺度的生物多样性保护和评估需求。遥感作为获取生物多样性信息的另一种手段, 近年来在生物多样性领域发展迅速, 其覆盖广、序列性以及可重复性等特点使之在大尺度生物多样性监测和制图以及评估方面具有极大优势。本文主要通过文献收集整理, 从观测手段、研究尺度、观测对象和生物多样性关注点等方面综述了遥感在生物多样性研究中的应用现状, 重点分析不同遥感平台的技术优势和局限性, 并探讨了未来遥感在生物多样性研究的应用趋势。遥感平台按观测高度可分为近地面遥感、航空遥感和卫星遥感, 能够获取样地-景观-区域-洲际-全球尺度的生物多样性信息。星载平台在生物多样性研究中应用最多, 航空遥感的应用研究偏少主要受飞行成本限制。近地面遥感作为一个新兴平台, 能够直接观测到物种的个体, 获取生物多样性关注的物种和种群信息, 是未来遥感在生物多样性应用中的发展方向。虽然遥感技术在生物多样性研究中的应用存在一定的局限性, 未来随着传感器发展和多源数据融合技术的完善, 遥感能更好地从多个尺度、全方位地服务于生物多样性保护和评估。     

Genome-wide analysis of epigenetic dynamics across human developmental stages and tissues

Background

Epigenome is highly dynamic during the early stages of embryonic development. Epigenetic modifications provide the necessary regulation for lineage specification and enable the maintenance of cellular identity. Given the rapid accumulation of genome-wide epigenomic modification maps across cellular differentiation process, there is an urgent need to characterize epigenetic dynamics and reveal their impacts on differential gene regulation.

Methods

We proposed DiffEM, a computational method for differential analysis of epigenetic modifications and identified highly dynamic modification sites along cellular differentiation process. We applied this approach to investigating 6 epigenetic marks of 20 kinds of human early developmental stages and tissues, including hESCs, 4 hESC-derived lineages and 15 human primary tissues.

Results

We identified highly dynamic modification sites where different cell types exhibit distinctive modification patterns, and found that these highly dynamic sites enriched in the genes related to cellular development and differentiation. Further, to evaluate the effectiveness of our method, we correlated the dynamics scores of epigenetic modifications with the variance of gene expression, and compared the results of our method with those of the existing algorithms. The comparison results demonstrate the power of our method in evaluating the epigenetic dynamics and identifying highly dynamic regions along cell differentiation process.

     

New mechanism of nerve injury in Alzheimer’s disease: β‐amyloid‐induced neuronal pyroptosis

The present study was designed to investigate the role of β‐amyloid (Aβ_1‐42) in inducing neuronal pyroptosis and its mechanism. Mice cortical neurons (MCNs) were used in this study, LPS + Nigericin was used to induce pyroptosis in MCNs (positive control group), and Aβ_1‐42 was used to interfere with MCNs. In addition, propidium iodide (PI) staining was used to examine cell permeability, lactate dehydrogenase (LDH) release assay was employed to detect cytotoxicity, immunofluorescence (IF) staining was used to investigate the expression level of the key protein GSDMD, Western blot was performed to detect the expression levels of key proteins, and enzyme‐linked immunosorbent assay (ELISA) was utilized to determine the expression levels of inflammatory factors in culture medium, including IL‐1β, IL‐18 and TNF‐α. Small interfering RNA (siRNA) was used to silence the mRNA expression of caspase‐1 and GSDMD, and Aβ_1‐42 was used to induce pyroptosis, followed by investigation of the role of caspase‐1‐mediated GSDMD cleavage in pyroptosis. In addition, necrosulfonamide (NSA), an inhibitor of GSDMD oligomerization, was used for pre‐treatment, and Aβ_1‐42 was subsequently used to observe the pyroptosis in MCNs. Finally, AAV9‐siRNA‐caspase‐1 was injected into the tail vein of APP/PS1 double transgenic mice (Alzheimer's disease mice) for caspase‐1 mRNA inhibition, followed by observation of behavioural changes in mice and measurement of the expression of inflammatory factors and pyroptosis‐related protein. As results, Aβ_1‐42 could induce pyroptosis in MCNs, increase cell permeability and enhance LDH release, which were similar to the LPS + Nigericin‐induced pyroptosis. Meanwhile, the expression levels of cellular GSDMD and p30‐GSDMD were up‐regulated, the levels of NLRP3 inflammasome and GSDMD‐cleaved protein caspase‐1 were up‐regulated, and the levels of inflammatory factors in the medium were also up‐regulated. siRNA intervention in caspase‐1 or GSDMD inhibited Aβ_1‐42‐induced pyroptosis, and NSA pre‐treatment also caused the similar inhibitory effects. The behavioural ability of Alzheimer's disease (AD) mice was relieved after the injection of AAV9‐siRNA‐caspase‐1, and the expression of pyroptosis‐related protein in the cortex and hippocampus was down‐regulated. In conclusion, Aβ_1‐42 could induce pyroptosis by GSDMD protein, and NLRP3‐caspase‐1 signalling was an important signal to mediate GSDMD cleavage, which plays an important role in Aβ_1‐42‐induced pyroptosis in neurons. Therefore, GSDMD is expected to be a novel therapeutic target for AD.     

Allantoin-N concentration changes and analysis of the influencing factors on its changes during different manure composting

Allantoin is one of important nitrogenous compounds in manure. In this study, the simulation experiment of aerobic composting was adopted to explore concentration changes, degradation and relevant influencing factors of allantoin-N during six manure composting. The result showed that the allantoin-N concentration was markedly different among different manures. The various livestock and poultry excreted 1.92-11.14gkg(-1) allantoin-N which accounted for 9.98-32.27% of the total excreted nitrogen. The changing trend of the allantoin-N concentration firstly increased (for 0-14 days), then decreased (for 14-70 days) during different manure composting, and the allantoin-N concentration after composting was lower than the initial allantoin-N concentration in all manure composting. During allantoin degradation for 14-70 days of composting, the half-life of allantoin-N was 57.76 days in broiler manure, 46.21 days in layer-hen manure, 27.73 days in hog manure, 25.67 days in sow manure, 38.51 days in young pig manure and 15.75 days in dairy manure, and the sequence in the half-life was chicken manure>pig manure>dairy manure. Allantoin degradation conformed to first-order kinetics. Through the correlation analysis, hippuric acid, hydrolyzable nitrogen, amino acid-nitrogen, HUN fraction, NO(3)(-)-N and total hydrolyzable nitrogen could be closely related to allantoin-N transforming during composting. Humification could be the main influencing factor for reducing allantoin-N concentration during composting.     

Protective mechanism of FSH against oxidative damage in mouse ovarian granulosa cells by repressing autophagy

Oxidative stress-induced granulosa cell (GCs) death represents a common reason for follicular atresia. Follicle-stimulating hormone (FSH) has been shown to prevent GCs from oxidative injury, although the underlying mechanism remains to be elucidated. Here we first report that the suppression of autophagic cell death via some novel signaling effectors is engaged in FSH-mediated GCs protection against oxidative damage. The decline in GCs viability caused by oxidant injury was remarkably reduced following FSH treatment, along with impaired macroautophagic/autophagic flux under conditions of oxidative stress both in vivo and in vitro. Blocking of autophagy displayed similar levels of suppression in oxidant-induced cell death compared with FSH treatment, but FSH did not further improve survival of GCs pretreated with autophagy inhibitors. Further investigations revealed that activation of the phosphoinositide 3-kinase (PI3K)-AKT-MTOR (mechanistic target of rapamycin [serine/threonine kinase]) signaling pathway was required for FSH-mediated GCs survival from oxidative stress-induced autophagy. Additionally, the FSH-PI3K-AKT axis also downregulated the autophagic response by targeting FOXO1, whereas constitutive activation of FOXO1 in GCs not only abolished the protection from FSH, but also emancipated the autophagic process, from the protein level of MAP1LC3B-II to autophagic gene expression. Furthermore, FSH inhibited the production of acetylated FOXO1 and its interaction with Atg proteins, followed by a decreased level of autophagic cell death upon oxidative stress. Taken together, our findings suggest a new mechanism involving FSH-FOXO1 signaling in defense against oxidative damage to GCs by restraining autophagy, which may be a potential avenue for the clinical treatment of anovulatory disorders.     

Superparamagnetic poly(methyl methacrylate) beads for nattokinase purification from fermentation broth

An effective method for purification of nattokinase from fermentation broth using magnetic poly(methyl methacrylate) (PMMA) beads immobilized with p-aminobenzamidine was proposed in this study. Firstly, magnetic PMMA beads with a narrow size distribution were prepared by spraying suspension polymerization. Then, they were highly functionalized via transesterification reaction with polyethylene glycol. The surface hydroxyl-modified magnetic beads obtained were further modified with chloroethylamine to transfer the surface amino-modified magnetic functional beads. The morphology and surface functionality of the magnetic beads were examined by scanning electron microscopy and Fourier transform infrared. An affinity ligand, p-aminobenzamidine was covalently immobilized to the amino-modified magnetic beads by the glutaraldehyde method for nattokinase purification directly from the fermentation broth. The purification factor and the recovery of the enzyme activity were found to be 8.7 and 85%, respectively. The purification of nattokinase from fermentation broth by magnetic beads only took 40 min, which shows a very fast purification of nattokinase compared to traditional purification methods.