PDA: Pooled DNA analyzer

Background  

Association mapping using abundant single nucleotide polymorphisms is a powerful tool for identifying disease susceptibility genes for complex traits and exploring possible genetic diversity. Genotyping large numbers of SNPs individually is performed routinely but is cost prohibitive for large-scale genetic studies. DNA pooling is a reliable and cost-saving alternative genotyping method. However, no software has been developed for complete pooled-DNA analyses, including data standardization, allele frequency estimation, and single/multipoint DNA pooling association tests. This motivated the development of the software, 'PDA' (Pooled DNA Analyzer), to analyze pooled DNA data.     

How pure is your thiosialoside? A reinvestigation into the HPLC purification of thioglycosides of N-acetylneuraminic acid

The synthesis of thiosialosides as potential biological probes for investigations involving the use of sialic acid-recognising proteins has been reinvestigated. It has been found that the most efficient method for the preparation of thiosialosides free from any 2,3-didehydro sialic acid contaminants involves an intermediate HPLC purification of thiosialosides as their methyl esters. Subsequent methyl ester hydrolysis provides thiosialosides (eg. 6 and 14) which are suitable for studies involving the use of sialic acid-recognising proteins.     

Mississippian (Lower Carboniferous) microfossils from the Chios Mélange (Chios Island, Greece)

The Chios Mélange is a thick Paleozoic wildflysch sequence that crops out on the Greek island Chios. It is composed of chert, limestone and volcanic blocks floating in a siliciclastic turbiditic matrix. New data suggest that the youngest blocks within the Chios Mélange are clasts of a breccia from the Kouramia-Nenitouria area that contain conodonts of late Visean or early Serpukovian age. The conodont fauna from the breccias is characterized by the genera Gnathodus and Lochriea, which favored deeper-water, open-marine facies. Elsewhere on the island, in the Papalia-Nagos area, calcareous microfossils of middle to late Visean age have been recovered from lime grainstone beds within the Chios Mélange. Allochems making up the grainstones are interpreted to have been transported into deeper-water turbiditic facies, but there is no evidence of stratigraphic reworking. Age-diagnostic calcareous microfossils include the alga Koninckopora inflata and foraminifers in the genus Paraarchaediscus. In situ Mississippian microfossils indicate that the Chios Mélange is older than Pennsylvanian (Upper Carboniferous) - Permian, as previously thought. The revised age suggests that the origin of the Chios Mélange may be related to the development of an accretionary prism during the Hercynian Orogeny.© 2003 Éditions scientifiques et médicales Elsevier SAS. All rights reserved.