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121.
Auxin/indole-3-acetic acid (Aux/IAA) proteins function as repressors of auxin response gene expression when auxin concentrations in a cell are low. At elevated auxin concentrations, these repressors are destroyed via the ubiquitin-proteasome pathway, resulting in derepression/activation of auxin response genes. Most Aux/IAA repressors contain four conserved domains, with one of these being an active, portable repression domain (domain I) and a second being an auxin-dependent instability domain (domain II). Here, we have analyzed the effects of amino acid substitutions in the repression domain of selected Aux/IAA proteins. We show that stabilized versions of Aux/IAA proteins with amino acid substitutions in domain I display contrasting phenotypes when expressed in transformed Arabidopsis (Arabidopsis thaliana) plants. An alanine-for-leucine substitution in the LxLxL (where L is leucine and x is another amino acid) repression domain of IAA3, IAA6, or IAA19 confers enhanced auxin response gene expression and "high-auxin" phenotypes when expressed from the 35S or IAA19 promoter (as tested with IAA19) in transformed Arabidopsis plants. In marked contrast, a single alanine-for-leucine substitution in domain I of IAA12 or IAA17 confers repression of auxin response genes and "low-auxin" phenotypes. These results point to intrinsic differences in the repression domain(s) of IAA proteins and suggest that some IAA proteins have stronger or more complex repression domains than others. 相似文献
122.
123.
Daniel F. Luers Joseph W. Love Gretchen Bath-Martin 《Environmental Biology of Fishes》2011,90(1):19-27
American eel (Anguilla rostrata Lesueur) is born in the Atlantic Ocean, but larvae redistribute throughout diverse habitats of North American estuaries and
freshwater streams. We hypothesized that early stage A. rostrata differed in abundance among sites within a single coastal lagoon, Newport Bay (Maryland) for two sampling seasons (March–May
in 2007 and 2008). Catch per unit effort (CPUE) of early stage A. rostrata was usually similar between years at a site, except that it was higher at one site in 2008 than in 2007. The CPUE varied
among sites within Newport Bay, but not significantly so because of high, intra-annual variance in CPUE at a site. As reported
for New Jersey coastal estuaries, variation in the CPUE tended to be higher in brackish water habitats. Intra-annual variation
in CPUE from March until May was partially explained by oxygenation and salinity. The CPUE of settling eels was greatest when
water was well-oxygenated (dissolved oxygen >8 mg·L−1) and mildly brackish (0.3–3.2 ppt). While larval supply to a coastal estuary may annually influence the magnitude of potential
settlers, temporal differences in habitat conditions within Newport Bay also influenced settlement patterns. Differences in
habitat conditions can affect the pigmentation rates of settling early stage eels. We measured rates of pigmentation, which
corresponded with age of the fish. However, rates did not differ among sites or vary with habitat conditions. Pigmentation
levels from March to May increased at a rate of about 0.02% per week. Monitoring programs for early phase American eel should
consider the steepness of habitat gradients within estuaries and habitat covariates when assessing population status. 相似文献
124.
The importance of the extracellular matrix (ECM) in muscle is widely recognized, since ECM plays a central role in proper muscle development (Buck and Horwitz, 1987), tissue structural support (Purslow, 2002), and transmission of mechanical signals between fibers and tendon (Huijing, 1999). Since substrate biomechanical properties have been shown to be critical in the biology of tissue development and remodeling (Engler et al., 2006; Gilbert et al., 2010), it is likely that mechanics are critical for ECM to perform its function. Unfortunately, there are almost no data available regarding skeletal muscle ECM viscoelastic properties. This is primarily due to the impossibility of isolating and testing muscle ECM. Therefore, this note presents a new method to quantify viscoelastic ECM modulus by combining tests of single muscle fibers and fiber bundles. Our results demonstrate that ECM is a highly nonlinearly elastic material, while muscle fibers are linearly elastic. 相似文献
125.
Harrison CJ Meinke G Kwun HJ Rogalin H Phelan PJ Bullock PA Chang Y Moore PS Bohm A 《Journal of molecular biology》2011,409(4):529-542
The double-stranded DNA polyomavirus Merkel cell polyomavirus (MCV) causes Merkel cell carcinoma, an aggressive but rare human skin cancer that most often affects immunosuppressed and elderly persons. As in other polyomaviruses, the large T-antigen of MCV recognizes the viral origin of replication by binding repeating G(A/G)GGC pentamers. The spacing, number, orientation, and necessity of repeats for viral replication differ, however, from other family members such as SV40 and murine polyomavirus. We report here the 2.9 Å crystal structure of the MCV large T-antigen origin binding domain (OBD) in complex with a DNA fragment from the MCV origin of replication. Consistent with replication data showing that three of the G(A/G)GGC-like binding sites near the center of the origin are required for replication, the crystal structure contains three copies of the OBD. This stoichiometry was verified using isothermal titration calorimetry. The affinity for G(A/G)GGC-containing double-stranded DNA was found to be ∼ 740 nM, approximately 8-fold weaker than the equivalent domain in SV40 for the analogous region of the SV40 origin. The difference in affinity is partially attributable to DNA-binding residue Lys331 (Arg154 in SV40). In contrast to SV40, a small protein-protein interface is observed between MCV OBDs when bound to the central region of the origin. This protein-protein interface is reminiscent of that seen in bovine papilloma virus E1 protein. Mutational analysis indicates, however, that this interface contributes little to DNA binding energy. 相似文献
126.
Ballweber L Robinson B Kreger A Fialkow M Lentz G McElrath MJ Hladik F 《Journal of virology》2011,85(24):13443-13447
Although implied by other models, proof that Langerhans cells (LCs) in the human vagina participate in dissemination of infectious human immunodeficiency virus type 1 (HIV-1) has been lacking. Here, we show that LCs migrate from HIV-1-exposed vaginal epithelia and pass infectious virus to CD4+ T cells without being productively infected themselves, and we point to a pathway that might enable HIV-1 to avoid degradation in vaginal LCs. Transport by migratory LCs to local lymphatics in a nonproductive but infectious form may aid HIV-1 in evasion of topical microbicides that target its intracellular productive life cycle. 相似文献
127.
We tested the hypothesis that development of the Antarctic urchin Sterechinus neumayeri under future ocean conditions of warming and acidification would incur physiological costs, reducing the tolerance of a secondary stressor. The aim of this study is twofold: (1) quantify current austral spring temperature and pH near sea urchin habitat at Cape Evans in McMurdo Sound, Antarctica and (2) spawn S. neumayeri in the laboratory and raise early developmental stages (EDSs) under ambient (?0.7 °C; 400 µatm pCO2) and future (+2.6 °C; 650 and 1,000 µatm pCO2) ocean conditions and expose four EDSs (blastula, gastrula, prism, and 4-arm echinopluteus) to a one hour acute heat stress and assess survivorship. Results of field data from 2011 to 2012 show extremely stable inter-annual pH conditions ranging from 7.99 to 8.08, suggesting that future ocean acidification will drastically alter the pH-seascape for S. neumayeri. In the laboratory, S. neumayeri EDSs appear to be tolerant of temperatures and pCO2 levels above their current habitat conditions. EDSs survived acute heat exposures >20 °C above habitat temperatures of ?1.9 °C. No pCO2 effect was observed for EDSs reared at ?0.7 °C. When reared at +2.6 °C, small but significant pCO2 effects were observed at the blastula and prism stage, suggesting that multiple stressors are more detrimental than single stressors. While surprisingly tolerant overall, blastulae were the most sensitive stage to ocean warming and acidification. We conclude that S. neumayeri may be unexpectedly physiologically tolerant of future ocean conditions. 相似文献
128.
Gretchen Meinke Paul J. Phelan Radha Kalekar Jong Shin Jacques Archambault Andrew Bohm Peter A. Bullock 《PLoS pathogens》2014,10(2)
JC virus is a member of the Polyomavirus family of DNA tumor viruses and the causative agent of progressive multifocal leukoencephalopathy (PML). PML is a disease that occurs primarily in people who are immunocompromised and is usually fatal. As with other Polyomavirus family members, the replication of JC virus (JCV) DNA is dependent upon the virally encoded protein T-antigen. To further our understanding of JCV replication, we have determined the crystal structure of the origin-binding domain (OBD) of JCV T-antigen. This structure provides the first molecular understanding of JCV T-ag replication functions; for example, it suggests how the JCV T-ag OBD site-specifically binds to the major groove of GAGGC sequences in the origin. Furthermore, these studies suggest how the JCV OBDs interact during subsequent oligomerization events. We also report that the OBD contains a novel “pocket”; which sequesters the A1 & B2 loops of neighboring molecules. Mutagenesis of a residue in the pocket associated with the JCV T-ag OBD interfered with viral replication. Finally, we report that relative to the SV40 OBD, the surface of the JCV OBD contains one hemisphere that is highly conserved and one that is highly variable. 相似文献
129.
Gretchen H. Roffler Sandra L. Talbot Gordon Luikart George K. Sage Kristy L. Pilgrim Layne G. Adams Michael K. Schwartz 《Conservation Genetics》2014,15(4):837-851
Identifying patterns of fine-scale genetic structure in natural populations can advance understanding of critical ecological processes such as dispersal and gene flow across heterogeneous landscapes. Alpine ungulates generally exhibit high levels of genetic structure due to female philopatry and patchy configuration of mountain habitats. We assessed the spatial scale of genetic structure and the amount of gene flow in 301 Dall’s sheep (Ovis dalli dalli) at the landscape level using 15 nuclear microsatellites and 473 base pairs of the mitochondrial (mtDNA) control region. Dall’s sheep exhibited significant genetic structure within contiguous mountain ranges, but mtDNA structure occurred at a broader geographic scale than nuclear DNA within the study area, and mtDNA structure for other North American mountain sheep populations. No evidence of male-mediated gene flow or greater philopatry of females was observed; there was little difference between markers with different modes of inheritance (pairwise nuclear DNA F ST = 0.004–0.325; mtDNA F ST = 0.009–0.544), and males were no more likely than females to be recent immigrants. Historical patterns based on mtDNA indicate separate northern and southern lineages and a pattern of expansion following regional glacial retreat. Boundaries of genetic clusters aligned geographically with prominent mountain ranges, icefields, and major river valleys based on Bayesian and hierarchical modeling of microsatellite and mtDNA data. Our results suggest that fine-scale genetic structure in Dall’s sheep is influenced by limited dispersal, and structure may be weaker in populations occurring near ancestral levels of density and distribution in continuous habitats compared to other alpine ungulates that have experienced declines and marked habitat fragmentation. 相似文献
130.
Species distribution models (SDMs) were built with US Forest Inventory and Analysis (FIA) publicly available plot coordinates, which are altered for plot security purposes, and compared with SDMs built with true plot coordinates. Six species endemic to the western US, including four junipers (Juniperus deppeana var. deppeana, J. monosperma, J. occidentalis, J. osteosperma) and two piñons (Pinus edulis, P. monophylla), were analyzed. The presence–absence models based on current climatic variables were generated over a series of species-specific modeling extents using Random Forests and applied to forecast climatic conditions. The distributions of predictor variables sampled with public coordinates were compared to those sampled with true coordinates using t tests with a Bonferroni adjustment for multiple comparisons. Public- and true-based models were compared using metrics of classification accuracy. The modeled current and forecast distributions were compared in terms of their overall areal agreement and their geographic mean centroids. Comparison of the underlying distributions of predictor variables sampled with true versus public coordinates did not indicate a significant difference for any species at any extent. Both the public- and true-based models had comparable classification accuracies across extent for each species, with the exception of one species, J. occidentalis. True-based models produced geographic distributions with smaller areas under current and future scenarios. The greatest areal difference occurred in the species with the lowest modeled accuracies (J. occidentalis), and had a forecast distribution which diverged severely. The other species had forecast distributions with similar magnitudes of modeled distribution shifts. 相似文献