Influence of the 33 kDa manganese-stabilizing protein on the structure and substrate accessibility of the oxygen-evolving complex of photosystem II

The 33 kDa manganese-stabilizing extrinsic protein binds to the lumenal side of photosystem II (PS II) close to the Mn(4)Ca cluster of the oxygen-evolving complex, where it limits access of small molecules to the metal site. Our previous finding that the removal of this protein did not alter the magnetic coupling regime within the manganese cluster, measured by electron spin-echo envelope modulation [Gregor, W., and Britt, R. D. (2000) Photosynth. Res. 65, 175-185], prompted us to examine whether this accessibility control is also true for substrate water, using the same pulsed EPR technique. Comparing the deuteron modulation of the S(2)-state multiline signal of PS II membranes, equilibrated with deuterated water (D(2)O) after removal or retention of the 33 kDa protein, we observed no change in the number and the distance of deuterons magnetically coupled to manganese, indicating that the number and distance of water molecules bound to the manganese cluster are independent of bound 33 kDa protein in the S(1) state, in which the sample was poised prior to cryogenic illumination. A simple modulation depth analysis revealed a distance of 2.5-2.6 A between the closest deuteron and manganese. These results are in agreement with our refined X-ray absorption analysis. The manganese K-edge positions, reflecting their oxidation states, and the extended X-ray absorption fine structure amplitudes and distances between the manganese ions and their oxygen and nitrogen ligands (1.8, 2.7, and 3.3-3.4 A) were independent of bound 33 kDa protein.     

Viscoelastic properties and dynamics of porcine gastric mucin

Gastric mucin is a glycoprotein known to undergo a pH-dependent sol-gel transition that is crucial to the protective function of the gastric mucus layer in mammalian stomachs. We present microscope-based dynamic light scattering data on porcine gastric mucin at pH 6 (solution) and pH 2 (gel) with and without the presence of tracer particles. The data provide a measurement of the microscale viscosity and the shear elastic modulus as well as an estimate of the mesh size of the gel formed at pH 2. We observe that the microscale viscosity in the gel is about 100-fold lower than its macroscopic viscosity, suggesting that large pores open up in the gel reducing frictional effects. The data presented here help to characterize physiologically relevant viscoelastic properties of an important biological macromolecule and may also serve to shed light on diffusive motion of small particles in the complex heterogeneous environment of a polymer gel network.     

Branching of annual shoots in common walnut (Juglans regia L.) as affected by bud production and indol-3-acetic acid (IAA) content

Relationship of bud production (axillary and terminally) of annual shoot (1Y) and/or the content of bud-derived indol-3-acetic acid (IAA) to branching of the 1Y was studied in common walnut (Juglans regia L.), cvs. Franquette and Lara. Cultivar-related branch architecture was determined. Lara tended to branch more densely than Franquette (53 vs. 42%). Significantly more fruiting off-spring shoots (FO) than vegetative ones (VO) grew-out per 1Y in both cultivars, whereas the ratio FO/VO of Lara exceeded that of Franquette by four times. An acrotonic branching pattern was more strongly expressed in Lara compared to Franquette. Bud-derived IAA was influenced by the cultivar (Franquette had 3.6 times more cumulative IAA along the 1Y than Lara), and by the relative position (terminal, subterminal, medial and basal) of the buds along 1Y. An opposite relationship between branching density and cumulative IAA content was established in both cultivars. At the 1Y relative position level, the opposite ratio between branching density and IAA content was clearly shown only on the basal position of the bud along 1Y in the Lara cultivar. Such an inconsistent linkage between bud production and the IAA spatial distribution along the 1Y illustrated that hormonal factors probably weakly affect the branching of Franquette and Lara. The length of the parent 1Y, the position of the buds along the 1Y-length, and the fate of the buds seemed to have a stronger influence on the bud out-growth and further development of the off-springs. In further analyses, seasonal fluctuations of the IAA, and the following activity of the buds should be investigated in order to improve the understanding of a complex branching phenomenon in walnut.     

The effects of sloped surfaces on locomotion: an electromyographic analysis

Investigations using quadrupeds have suggested that the motor programs used for slope walking differ from that used for level walking. This idea has not yet been explored in humans. The aim of this study was to use electromyographic (EMG) signals obtained during level and slope walking to complement previously published joint angle and joint moment data in elucidating such control strategies. Nine healthy volunteers walked on an instrumented ramp at each of five grades (-39%, -15%, 0%, +15%, +39%). EMG activity was recorded unilaterally from eight lower limb muscles (gluteus maximus (GM), rectus femoris (RF), vastus medialis (VM), biceps femoris (BF), semimembranosus (SM), soleus (Sol), medial gastrocnemius (MG), and tibialis anterior (TA)). The burst onset, duration, and mean activity were calculated for each burst in every trial. The burst characteristics were then averaged within each grade and subject and submitted to repeated measures ANOVAs to assess the effect of grade (alpha=0.05, a priori). Power production increased during upslope walking, as did the mean activity and burst durations of most muscles. In this case, the changes in muscle activity patterns were not predictable based on the changes in joint moments because of the activation of biarticular muscles as antagonists. During downslope walking power absorption increased, as did knee extensor activity (mean and duration) and the duration of the ankle plantarflexor activity. The changes in muscle activity during this task were directly related to the changes in joint moments. Collectively these data suggest that the nervous system uses different control strategies to successfully locomote on slopes, and that joint power requirements are an important factor in determining these control strategies.     

Differential absorption and esterification of dietary long‐chain fatty acids by larvae of the dragonfly,Aeshna cyanea

In order to evaluate whether dietary long‐chain fatty acids were differentially absorbed, Aeshna cyanea larvae received 5 μl oral doses containing combinations of two radiolabeled fatty acids at nearly equal radioactive and nmolar concentrations: (1) ³H‐oleic and ¹⁴C‐palmitic acids; (2) ³H‐oleic and ¹⁴C‐stearic acids; and (3) ³H‐palmitic and ¹⁴C‐stearic acids. After 3 h or 1 day, hemolymph samples, midgut tissue, midgut contents and fat body tissue were collected and assayed for labeled fatty acids. The ³H/¹⁴C ratios indicated that there was a preference for absorption of the monounsaturated oleic acid over both saturated palmitic and stearic acids and that the shorter palmitic acid was absorbed at a higher rate than the longer stearic acid. There were also differences in the ³H/¹⁴C ratios of the various lipid classes of the midgut wall, hemolymph, and fat body that reflected differential esterifications and transport of these fatty acids. Arch. Insect Biochem. Physiol. 40:183–193, 1999. © 1999 Wiley‐Liss, Inc.     

Analysis of Gene Expression and Ultrastructure of Stifle Menisci from Juvenile and Adult Pigs

The origin of the age-associated degenerative processes in meniscal tissue is poorly understood and may be related to an imbalance of anabolic and catabolic metabolism. The aim of the current study was to compare medial menisci isolated from juvenile pigs and degenerated medial menisci from adult pigs in terms of gene expression profile and ultrastructure. Medial menisci were isolated from the knee joints of juvenile and adult pigs (n = 8 for each group). Degeneration was determined histologically according to a scoring system. In addition, the gene expression profiles of 14 genes encoding extracellular matrix proteins, catabolic matrix metalloproteinases and mediators of inflammation were analyzed. Changes in the ultrastructure of the collagen network of the meniscal tissue were analyzed by using transmission electron microscopy. The histologic analysis of menisci showed significantly higher grade of degeneration in tissue isolated from adult porcine knee joints compared with menisci isolated from juvenile knee joints. In particular, destruction of the collagen network was greater in adult menisci than in juvenile menisci. Degenerated menisci showed significantly decreased gene expression of COL1A1 and increased expression of MMP2, MMP13, and IL8. The menisci from adult porcine knee joints can serve as a model for meniscal degeneration. Degenerative changes were manifested as differences in histopathology, gene expression and ultrastructure of collagen network.Abbreviations: MMP, matrix metalloproteinase; SOX, sex-determining region box; VEGF, vascular endothelial growth factorMuch research is focused on the degeneration of connective tissue, particularly of the cartilage tissue that stabilizes the knee joint. The goal of the current study was to determine whether menisci in adult pigs show patterns of degeneration in the absence of previous major injuries, which might cause a secondary form of degeneration.In the mammalian knee joint, the incongruence between the femoral condyle and the tibial plateau is partially balanced by 2 C-shaped fibrocartilaginous menisci. These menisci absorb impact forces, help to distribute the mechanical load on the tibial plateau, and act as stabilizers of the knee joint.^35,54 Therefore, menisci are thought to play an important role in the development of osteoarthritis in knee joints,³⁹ as indicated by the results following meniscal resection.⁵⁸ Both injuries¹³ and degeneration⁴ of meniscal tissue increase the risk of osteoarthritis of the knee joint. Because the self-repair mechanisms of meniscal tissue appear to be inadequate,⁹ more than 1 million surgical interventions on menisci are performed every year in the United States.²⁷ In addition, degenerative changes in the meniscal tissue are believed to contribute to meniscal lesions.The main component of the meniscus is water (70%); and most of its dry weight is due to the protein collagen, mainly collagen I (98%).⁵⁷ The ultrastructure of meniscal tissue consists of collagen fibers that are orientated circumferentially in the superficial layers. The intermediate layer consists of tangentially orientated collagen fibers.¹⁵ Other proteins involved in the extracellular matrix of meniscal tissue include collagen II and the proteoglycan aggrecan.¹⁵In addition, biglycan and fibromodulin have been found in porcine menisci.⁴²The primary cells in meniscal tissue are chondrocytes which, in concert with fibroblasts, produce the extracellular matrix of fibrocartilage.⁵⁵ In addition, chondrocytes produce the lubricant lubricin,⁵⁶ which also is expressed in meniscal tissue.^24,49Meniscal degeneration can be understood as an imbalance between anabolic and catabolic processes, as it has already been shown for articular cartilage.² Changes in the gene expression of menisci from osteoarthritic knee joints including genes involved in immune and inflammatory responses as well as in tissue development have been previously shown.⁵² Furthermore, the production of the matrix proteins collagen types I, II, and III decreases during the progression of human meniscal degeneration.⁴³ Changes in the gene expression profile of anabolic genes (for example, collagen I, collagen II, aggrecan) and catabolic genes (for example, matrix metalloproteinases) are early indicators of osteoarthritis.^{2,14,22,26,34,51} Therefore, additional studies analyzing the gene expression profiles of healthy and degenerated menisci are warranted to evaluate whether such marker genes also exist for meniscal tissue. As a next step, the ultrastructure of degenerated meniscal tissue should be evaluated to analyze the influence of an altered gene expression profile on the extracellular matrix of menisci.In general, pigs are an appropriate animal model in biomedical research because of their similarities to humans in terms of anatomy and metabolism.^7,19,53 In meniscus research, goats³⁰ and sheeps are well-established animal models.^11,31,58 Nevertheless, the structure of porcine collagen is highly analogous to human collagen.³ This similarity was supported by the results of a comparison of the collagen in the hyaline cartilage among several species. ²⁵ Because pathogenesis for osteoarthritis is similar between human and animal tissue,³⁸ similarities in the pathophysiology of porcine and human meniscal tissue seem likely.The aim of the current study was to compare the medial menisci isolated from juvenile pigs with the degenerated medial menisci from adult pigs to determine whether differences in their gene expression profiles and ultrastructure are present.     

Functionality of the GAL4/UAS system in <Emphasis Type="Italic">Tribolium</Emphasis> requires the use of endogenous core promoters

Background  

The red flour beetle Tribolium castaneum has developed into an insect model system second only to Drosophila. Moreover, as a coleopteran it represents the most species-rich metazoan taxon which also includes many pest species. The genetic toolbox for Tribolium research has expanded in the past years but spatio-temporally controlled misexpression of genes has not been possible so far.     

The nuclease a-inhibitor complex is characterized by a novel metal ion bridge

Nonspecific, extracellular nucleases have received enhanced attention recently as a consequence of the critical role that these enzymes can play in infectivity by overcoming the host neutrophil defense system. The activity of the cyanobacterial nuclease NucA, a member of the betabetaalpha Me superfamily, is controlled by the specific nuclease inhibitor, NuiA. Here we report the 2.3-A resolution crystal structure of the NucA-NuiA complex, showing that NucA inhibition by NuiA involves an unusual divalent metal ion bridge that connects the nuclease with its inhibitor. The C-terminal Thr-135(NuiA) hydroxyl oxygen is directly coordinated with the catalytic Mg(2+) of the nuclease active site, and Glu-24(NuiA) also extends into the active site, mimicking the charge of a scissile phosphate. NuiA residues Asp-75 and Trp-76 form a second interaction site, contributing to the strength and specificity of the interaction. The crystallographically defined interface is shown to be consistent with results of studies using site-directed NuiA mutants. This mode of inhibition differs dramatically from the exosite mechanism of inhibition seen with the DNase colicins E7/E9 and from other nuclease-inhibitor complexes that have been studied. The structure of this complex provides valuable insights for the development of inhibitors for related nonspecific nucleases that share the DRGH active site motif such as the Streptococcus pneumoniae nuclease EndA, which mediates infectivity of this pathogen, and mitochondrial EndoG, which is involved in recombination and apoptosis.