Nonquasineutral relativistic current filaments and their X-ray emission

Nonquasineutral electron current filaments with the azimuthal magnetic field are considered that arise due to the generation of electron vorticity in the initial (dissipative) stage of evolution of a current-carrying plasma, when the Hall number is small (σB/en _e c ? 1) because of the low values of the plasma conductivity and magnetic field strength. Equilibrium filamentary structures with both zero and nonzero net currents are considered. Structures with a zero net current type form on time scales of t < t _sk = (r ₀ω _pe /c)² t _st, where t _sk is the skin time, t _st is the typical time of electron-ion collisions, and r ₀ is the radius of the filament. It is shown that, in nonquasineutral filaments in which the current is carried by electrons drifting in the crossed electric (E _r ) and magnetic (B _θ) fields, ultrarelativistic electron beams on the typical charge-separation scale r _B = B/(4πen _e ) (the so-called magnetic Debye radius) can be generated. It is found that, for comparable electron currents, the characteristic electron energy in filaments with a nonzero net current is significantly lower than that in zero-net-current filaments that form on typical time scales of t < t _sk. This is because, in the latter type of filaments, the oppositely directed electron currents repel one another; as a result, both the density and velocity of electrons increase near the filament axis, where the velocities of relativistic electrons are maximum. Filaments with a zero net current can emit X rays with photon energies ? ω up to 10 MeV. The electron velocity distributions in filaments, the X-ray emission spectra, and the total X-ray yield per unit filament length are calculated as functions of the current and the electron number density in the filament. Analytical estimates of the characteristic lifetime of a radiating filament and the typical size of the radiating region as functions of the plasma density are obtained. The results of calculations are compared with the available experimental data.     

Formation of nonquasineutral vortex plasma structures with a zero net current

A nonquasineutral vortex structure with a zero net current is described that arises as a result of electron drift in crossed magnetic and electric fields, the latter being produced by charge separation on a spatial scale of about the magnetic Debye radius r _B = |B|/(4πen _e ). In such a structure with a radius of r ～ r _B , the magnetic field is maintained by a drift current on the order of the electron Alfvén current J _Ae = m _e c ³/(2e) and can become as strong as B ? m _e c ²/(er). Estimates show that, in a plasma with a density of n _e = 10²¹?10²³ cm^?3 and with nonzero electron vorticity driven by high-power laser radiation on a time scale on the order of θ _pe ^?1 , magnetic fields with a strength of B ～ 10⁸?10⁹ G are generated on micron and submicron scales. The system with closed current that is considered in the present paper can also serve as a model of hot spots in the channel of a Z-pinch.     

Palatability of macrophytes to the invasive freshwater snail Pomacea canaliculata: differential effects of multiple plant traits

1. By selective grazing, invasive grazers can alter macrophyte‐herbivore relationships in shallow freshwater bodies. Evaluating the palatability of macrophytes and understanding the determinants of plant palatability can help predict grazing impact. In no‐choice feeding assays, we tested the palatability of 21 species of freshwater macrophytes to the invasive freshwater apple snail Pomacea canaliculata. 2. Daily feeding rate varied greatly with plant species, ranging from 1.1 to 22% of snail body mass. We assessed six plant properties and examined their correlation with feeding rate. Total nitrogen content was positively related, and C:N ratio and dry matter content (DMC) negatively related, to snail feeding rate. There was no significant correlation between snail feeding rate and plant phenolic content, but the feeding rate on Myriophyllum aquaticum (the plant with the highest phenolic content) was very low. 3. We repeated the feeding assays for 15 species that were not palatable as fresh leaves with reconstituted plant tissues formed by mixing ground up dried leaves with agar. The feeding rate still differed greatly among macrophyte species. Phragmites australis and Vallisneria natans (two species with the highest DMC) were eaten much more as reconstituted plant than as fresh leaves, indicating that structure (i.e. DMC) may be important in their defence against snail herbivory. For two plants (M. aquaticum and Alternanthera philoxeroides) that had moderate amounts of nitrogen/phosphorus but were consumed very little as fresh and reconstituted tissues, we incorporated their extracts into a palatable agar‐based food. The extracts from both species greatly reduced snail feeding rate, indicating the presence of chemical defences in these two species. 4. These results indicated that feeding was affected by several plant traits. The snail favoured plants with a high nitrogen content and avoided plants with a high DMC. Only a few plants possessed chemical feeding deterrents that were effective against this snail. Given the invasive spread of P. canaliculata in Asia, ecologists and managers should consider plant palatability when selecting plants for use in wetland restoration and when predicting the impact of further invasion by this species.     

Nonquasineutral current equilibria as elementary structures of plasma dynamics

A study is made of the fundamental features of current filaments with a nonzero electron vorticity Ω _e ≡ B − (c/e) ▿ × p _ee ≠ 0 and the corresponding Lagrangian invariant I _e . Such current structures can exist on spatial scales of up to ω _pi ⁻¹. It is shown that the dissipative stage of the plasma evolution and the violation of Thomson’s theorem on vorticity conservation in an electron fluid are of fundamental importance for the onset of electron current structures. A key role of the screening of electric and magnetic fields at distances on the order of the magnetic Debye radius r _B = B/(4πen _e )—the main property of such current structures in a Hall medium with σB/(en _e c) ≫ 1—is stressed. Since the minimum size of a vortex structure is the London length c/ω _pe , the structures under consideration correspond to the condition r _B > c/ω _pe or B ² > 4πn _e m _e c ², which leads to strong charge separation in the filament and relativistic electron drift. It is demonstrated that the specific energy content in current structures is high at a filament current of 10–15 kA: from 100 J/cm³ at a plasma density of 10¹⁴ cm⁻³ (the parameters of a lightning leader) to 10⁷ J/cm³ for a fully ionized atmospheric-pressure air. Estimates are presented showing that the Earth’s ionosphere, circumsolar space, and interstellar space are all Hall media in which current vortex structures can occur. A localized cylindrical equilibrium with a magnetic field reversal is constructed—an equilibrium that correlates with the magnetic structures observed in intergalactic space. It is shown that a magnetized plasma can be studied by using evolutionary equations for the electron and ion Lagrangian invariants I _e and I _i . An investigation is carried out of the evolution of a current-carrying plasma in a cylinder with a strong external magnetic field and with a longitudinal electron current turned on in the initial stage—an object that can serve as the simplest electrodynamic model of a tokamak. In this case, it is assumed that the plasma conductivity is low in the initial stage and then increases substantially with time. Based on the conservation of the integral momentum of the charged particles and electromagnetic field in a plasma cylinder within a perfectly conducting wall impenetrable by particles, arguments are presented in support of the generation of a radial electric field in a plasma cylinder and the production of drift ion fluxes along the cylinder axis. A hypothesis is proposed that the ionized intergalactic gas expands under the action of electromagnetic forces.     

PCBOST: Protein classification based on structural trees

In this paper, we present the protein classification based on structural trees (PCBOST). This is a novel hierarchical classification of proteins that is primarily based on similarity of overall folds of proteins as well as on the modeled folding pathways of proteins. Amino acid sequences, functions of proteins and their evolutionary relationship are not taken into account in this classification. To date the database includes 3847 proteins and domains grouped into six categories having structural similarity and forming six structural trees (total 10,547 PDB-entries). The work on extension of the database and construction of novel structural trees is in progress. The service is free for all users and available at the URL <http://strees.protres.ru/>.     

Dynamics of an Al wire corona of a megaampere Z-pinch

It is shown that the development of instabilities in a Z-pinch plasma formed by loading a relatively thick Al wire (an initial diameter of 120 μm and a maximum discharge current of 2–3 MA) is slowed down due to the high plasma density in the wire corona. A cylindrically symmetric, regular, and stable corona surrounding the wire contains a helical formation with a dense, cold, and magnetized plasma. X-ray pulses with a photon energy of several keV and an FWHM duration of 10–20 ns are generated by a few imploded neck structures in the pinch phase of the corona evolution (70–100 ns after the current onset). The main part of X radiation emitted by individual bright spots in the photon energy range 1.5–2.4 keV (up to 40 J at a peak power of 4 GW) consists of the continuum and the bound-bound transition radiation from H-and He-like Al ions. A possible scenario for the axial magnetic field evolution during an X-ray pulse is outlined. __________ Translated from Fizika Plazmy, Vol. 28, No. 4, 2002, pp. 329–336. Original Russian Text Copyright ? 2002 by Kubeš, Renner, Krousky, Kravárik, Bakshaev, Blinov, Chernenko, Gordeev, Dan’ko, Korolev, Shashkov.     

Novel structural tree for beta-proteins containing abcd-units

A database of 528 beta-proteins and beta-domains containing abcd-units (among them 244 are nonhomologous) has been compiled from the Protein Data Bank (total 1511 PDB entries). A novel structural tree for this structural class of proteins that is composed of 153 possible polypeptide chain folds has been constructed. The structural classification of beta-proteins containing abcd-unit based on the structural tree has been developed. Both the database and the structural tree are accessible at the web-site (http://strees.protres.ru/).     

Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.)

Fifty microsatellite sequences (SSRs) were isolated from an enriched library of sesame (Sesamum indicum L.) using a modified protocol. After screening, 10 polymorphic microsatellites were used to determine their usefulness in diversity analysis among 16 sesame accessions. The number of alleles ranged from three to six alleles per locus with an average of 4.6 alleles. The fragment size varied from 150 bp to 307 bp. Expected heterozygosites (H_E) and polymorphism information contents (PICs) ranged from 0.437 to 0.858 and 0.34 to 0.80, respectively, which indicates the highly informative nature of the microsatellites reported here. These microsatellite markers will be very useful in diversity analysis among a large germplasm collection of sesame present in our Korean gene bank and also in the establishment of its core collection.     

Study of the plasma in a preformed Z-pinch constriction

The development of a preformed constriction in cylindrical agar-agar loads at currents of up to 3 MA is studied experimentally. The loads 3–5 mm in diameter have a mass density of 0.1 g/cm³ and are filled with different materials. Due to the implosion of the constriction to a minimum size of 40–70 μm, a hot dense plasma (with the electron density n _e=10²² cm⁻³, electron temperature T _e=0.8–1.5 keV, and ion temperature T _i=3–12 keV) is produced. It is found that the ion temperature substantially exceeds the electron temperature. The lifetime of the high-temperature plasma determined from the FWHM of a soft X radiation (SXR) pulse is shorter than 5 ns, the radiation power of photons with energies of ≥1 keV is higher than 0.5×10¹⁰ W, and their total energy attains 50 J. High-speed photography in the VUV, SXR, and optical spectral regions indicates the protracted generation of the high-temperature plasma. Calculations by the two-dimensional ideal MHD model of the Z-pinch show that the most important consequence of the protracted plasma generation in the constriction region is that the current is intercepted by a freshly produced plasma. In the course of plasma generation, the current near the axis inside the region of radius 50 μm is at most one-half of the total current. After the plasma generation comes to an end, almost the entire current is concentrated in this region for several nanoseconds; this process is accompanied by a sharp increase in the plasma temperature. __________ Translated from Fizika Plazmy, Vol. 27, No. 12, 2001, pp. 1101–1110. Original Russian Text Copyright ? 2001 by Bakshaev, Blinov, Vikhrev, Gordeev, Dan’ko, Korolev, Medovshchikov, Nedoseev, Smirnova, Tumanov, Chernenko, Shashkov.