The Ngorongoro Volcanic Highland and its relationships to volcanic deposits at Olduvai Gorge and East African Rift volcanism

The Ngorongoro Volcanic Highland (NVH), situated adjacent and to the east of Olduvai Gorge in northern Tanzania, is the source of the immense quantities of lava, ignimbrite, air fall ash, and volcaniclastic debris that occur interbedded in the Plio-Pleistocene sedimentary deposits in the Laetoli and Olduvai areas. These volcanics have proven crucial to unraveling stratigraphic correlations, the age of these successions, the archaeological and paleontological remains, as well as the source materials from which the bulk of the stone tools were manufactured. The NVH towers some 2,000 m above the Olduvai and Laetoli landscapes, affecting local climate, run-off, and providing varying elevation - climate controlled ecosystem, habitats, and riparian corridors extending into the Olduvai and Laetoli lowlands. The NVH also plays a crucial role in addressing the genesis and history of East African Rift (EAR) magmatism in northern Tanzania.In this contribution, we provide age and petrochemical compositions of the major NVH centers: Lemagurut, basalt to benmorite, 2.4-2.2 Ma; Satiman, tephrite to phonolite, 4.6-3.5 Ma; Oldeani, basalt to trachyandesite, 1.6-1.5 Ma; Ngorongoro, basalt to rhyolite, 2.3-2.0 Ma; Olmoti, basalt to trachyte, 2.0-1.8 Ma; Embagai, nephelinite to phonolite, 1.2-0.6 Ma; and Engelosin, phonolite, 3-2.7 Ma. We then discuss how these correlate in time and composition with volcanics preserved at Olduvai Gorge. Finally, we place this into context with our current understanding as to the eruptive history of the NVH and relationship to East African Rift volcanism.     

Concentrations and Distribution of Trace Metals in Water and Streambed Sediments of Orogodo River,Southern Nigeria

The distribution of Cd, Pb, Ni, Cr, Cu, Mn, Fe, and Zn in sediment and surface water, and some physico-chemical characteristics of Orogodo river sediments, were evaluated. The sediment pH ranged from 5.1–7.3; conductivity values ranged from 34.5 to 389.0 μScm^?1. Total nitrogen values ranged from 0.06–0.10%, NH₃-N values ranged from 0.25–0.44 mgkg^?1, percent total organic carbon ranged from 0.21–1.68%, and total phosphorus values ranged from 0.004–0.02% for dry and wet seasons. The sand fraction consists of 87–95%, silt fractions ranged from 0–2%, and clay fraction between 4–13%. The mean concentrations of metals (dry weight basis) in the streambed sediments ranged from 1.92–17.37 mgkg^?1 for Cu, 0.98–4.78 mgkg^?1 for Ni, 0.01–32.98 mgkg^?1 for Mn, 353.22–2045.64 mgkg^?1 for Fe, 69.96–100.16 mgkg^?1 for Zn, 0.21–1.32 mgkg^?1 for Cr, and Cd was less than 0.001 mgkg^?1 for wet and dry seasons. The mean concentrations of metals in the surface water ranged between 0.01–0.05–0.05 mg/L for Cu, nd-0.11 mg/L for Ni, 0.001–0.31 mg/L for Pb, 0.001–1.82 mg/L Mn, 0.01–3.52 mg/L for Fe, 0.16–0.61 mg/L for Zn, nd-0.007 mg/L for Cr, and <0.001 mg/L for Cd. Based on principal component analysis, two main sources of metals in the Orogodo River can be identified: (i) Cr, Cu, Pb, and Fe are mainly derived from industrial sources; (ii) Mn, Zn, and Ni associated with traffic activities. No element examined had a contamination/pollution index value greater than unity (pollution ranges). This implies that the multiple pollution indices obtained from the analysis showed that Orogodo River sediments were not polluted with heavy metals.     

Allelic variation of the β-, γ- and δ-kafirin genes in diverse Sorghum genotypes

The β-, γ- and δ-kafirin genes were sequenced from 35 Sorghum genotypes to investigate the allelic diversity of seed storage proteins. A range of grain sorghums, including inbred parents from internationally diverse breeding programs and landraces, and three wild Sorghum relatives were selected to encompass an extensive array of improved and unimproved germplasm in the Eusorghum. A single locus exists for each of the expressed kafirin-encoding genes, unlike the multigenic α-kafirins. Significant diversity was found for each locus, with the cysteine-rich β-kafirin having four alleles, including the first natural null mutant reported for this prolamin subfamily. This allele contains a frame shift insertion at +206 resulting in a premature stop codon. SDS-PAGE revealed that lines with this allele do not produce β-kafirin. An analysis of flour viscosity reveals that these β-kafirin null lines have a difference in grain quality, with significantly lower viscosity observed over the entire Rapid ViscoAnalyser time course. There was less diversity at the protein level within the cysteine-rich γ-kafirin, with only two alleles in the cultivated sorghums. There were only two alleles for the δ-kafirin locus among the S. bicolor germplasm, with one allele encoding ten extra amino acids, of which five were methionine residues, with an additional methionine resulting from a nucleotide substitution. This longer allele encodes a protein with 19.1% methionine. The Asian species, S. propinquum, had distinct alleles for all three kafirin genes. We found no evidence for selection on the three kafirin genes during sorghum domestication even though the δ-kafirin locus displayed comparatively low genetic variation. This study has identified genetic diversity in all single copy seed storage protein genes, including a null mutant for β-kafirin in Sorghum.     

Manipulating assimilate availability provides insight into the genes controlling grain size in sorghum

Variation in grain size, a major determinant of grain yield and quality in cereal crops, is determined by both the plant’s genetic potential and the available assimilate to fill the grain in the absence of stress. This study investigated grain size variation in response to variation in assimilate supply in sorghum using a diversity panel (n = 837) and a backcross-nested association mapping population (n = 1421) across four experiments. To explore the effects of genetic potential and assimilate availability on grain size, the top half of selected panicles was removed at anthesis. Results showed substantial variation in five grain size parameters with high heritability. Artificial reduction in grain number resulted in a general increase in grain weight, with the extent of the increase varying across genotypes. Genome-wide association studies identified 44 grain size quantitative trait locus (QTL) that were likely to act on assimilate availability and 50 QTL that were likely to act on genetic potential. This finding was further supported by functional enrichment analysis and co-location analysis with known grain number QTL and candidate genes. RNA interference and overexpression experiments were conducted to validate the function of one of the identified gene, SbDEP1, showing that SbDEP1 positively regulates grain number and negatively regulates grain size by controlling primary branching in sorghum. Haplotype analysis of SbDEP1 suggested a possible role in racial differentiation. The enhanced understanding of grain size variation in relation to assimilate availability presented in this study will benefit sorghum improvement and have implications for other cereal crops.     

Spent tea leaf as a ruminant feed

Spent tea leaf (STL), a residue from the manufacture of instant tea, has 30% crude protein and contains significant quantities of essential amino acids. Because of its high polyphenol content it may not be suitable for pigs and poultry, but in view of the more tolerant nature of microflora to tannins it could be a potential source of protein for ruminants.Three trials were conducted with cattle or sheep to evaluate STL as a ruminant feed. In Trial I, three concentrate rations prepared with 0, 10 or 20% STL were found to be readily acceptable by bull calves 6–8 months of age, without any harmful effects upon their health. In Trial II, four concentrate rations having 0, 10, 14 or 18% STL were found to be equally digestible by sheep.In Trial III, groups of 7 male Jersey calves, 5 months old, were given 0, 10 or 18% STL in concentrate rations, and rate of growth and concentrate conversion efficiency were investigated. There was no significant difference between the groups in live-weight gain, which suggests that up to 18% STL may be used in concentrate rations without apparent health problems. The average daily gains for the 3 rations were 288, 274 and 271 g, respectively. On the basis of cost/kg live-weight gain, a ration containing 18% STL would be 25% cheaper than a standard concentrate ration.     

Ig knock-in mice producing anti-carbohydrate antibodies: breakthrough of B cells producing low affinity anti-self antibodies

Natural Abs specific for the carbohydrate Ag Galalpha1-3Galbeta1-4GlcNAc-R (alphaGal) play an important role in providing protective host immunity to various pathogens; yet little is known about how production of these or other anti-carbohydrate natural Abs is regulated. In this study, we describe the generation of Ig knock-in mice carrying functionally rearranged H chain and L chain variable region genes isolated from a B cell hybridoma producing alphaGal-specific IgM Ab that make it possible to examine the development of B cells producing anti-carbohydrate natural Abs in the presence or absence of alphaGal as a self-Ag. Knock-in mice on a alphaGal-deficient background spontaneously developed alphaGal-specific IgM Abs of a sufficiently high titer to mediate rejection of alphaGal expressing cardiac transplants. In the spleen of these mice, B cells expressing alphaGal-specific IgM are located in the marginal zone. In knock-in mice that express alphaGal, B cells expressing the knocked in BCR undergo negative selection via receptor editing. Interestingly, production of low affinity alphaGal-specific Ab was observed in mice that express alphaGal that carry two copies of the knocked in H chain. We suggest that in these mice, receptor editing functioned to lower the affinity for self-Ag below a threshold that would result in overt pathology, while allowing development of low affinity anti-self Abs.     

Involvement of LEK1 in dendritic cell regulation of T cell immunity against Chlamydia

We investigated the hypothesis that the enhanced Ag-presenting function of IL-10-deficient dendritic cells (DCs) is related to specific immunoregulatory cytoskeletal molecules expressed when exposed to Ags. We analyzed the role of a prominent cytoskeletal protein, LEK1, in the immunoregulation of DC functions; specifically cytokine secretion, costimulatory molecule expression, and T cell activation against Chlamydia. Targeted knockdown of LEK1 expression using specific antisense oligonucleotides resulted in the rapid maturation of Chlamydia-exposed DCs as measured by FACS analysis of key activation markers (i.e., CD14, CD40, CD54, CD80, CD86, CD197, CD205, and MHC class II). The secretion of mostly Th1 cytokines and chemokines (IL-1a, IL-9, IL-12, MIP-1a, and GM-CSF but not IL-4 and IL-10) was also enhanced by blocking of LEK1. The function of LEK1 in DC regulation involves cytoskeletal changes, since the dynamics of expression of vimentin and actin, key proteins of the cellular cytoskeleton, were altered after exposure of LEK1 knockdown DCs to Chlamydia. Furthermore, targeted inhibition of LEK1 expression resulted in the enhancement of the immunostimulatory capacity of DCs for T cell activation against Chlamydia. Thus, LEK1 knockdown DCs activated immune T cells at least 10-fold over untreated DCs. These results suggest that the effect of IL-10 deficiency is mediated through LEK1-related events that lead to rapid maturation of DCs and acquisition of the capacity to activate an elevated T cell response. Targeted modulation of LEK1 expression provides a novel strategy for augmenting the immunostimulatory function of DCs for inducing an effective immunity against pathogens.     

Structural determinants for HIV-1 integrase inhibition by beta-diketo acids.

Among all the HIV-1 integrase inhibitors, the beta-diketo acids (DKAs) represent a major lead in anti-HIV-1 integrase drug design. These derivatives inhibit the integration reaction in vitro with a strong specificity for the 3'-end joining step. They are also antiviral and inhibit integration in vivo. The aim of the present study has been to investigate the molecular interactions between DKAs and HIV-1 integrase. We have compared 5CITEP with one of the most potent DKAs reported by the Merck group (L-708,906) and found that 5CITEP inhibits 3'-processing at concentrations where L-708,906 is only active on strand transfer. We also report a novel bifunctional DKA derivative that inhibits 3'-processing even more effectively than 5CITEP. The interactions of these inhibitors with the viral DNA donor ends have been studied by performing experiments with oligonucleotides containing defined modifications. We propose that the bifunctional DKA derivative binds to both the acceptor and donor sites of HIV-1 integrase, whereas the monofunctional L-708,906 derivative binds selectively to the acceptor site.