Biochemical and genetic analysis of the Drk SH2/SH3 adaptor protein of Drosophila.

The Drk SH3-SH2-SH3 adaptor protein has been genetically identified in a screen for rate-limiting components acting downstream of the Sevenless (Sev) receptor tyrosine kinase in the developing eye of Drosophila. It provides a link between the activated Sev receptor and Sos, a guanine nucleotide release factor that activates Ras1. We have used a combined biochemical and genetic approach to study the interactions between Sev, Drk and Sos. We show that Tyr2546 in the cytoplasmic tail of Sev is required for Drk binding, probably because it provides a recognition site for the Drk SH2 domain. Interestingly, a mutation at this site does not completely block Sev function in vivo. This may suggest that Sev can signal in a Drk-independent, parallel pathway or that Drk can also bind to an intermediate docking protein. Analysis of the Drk-Sos interaction has identified a high affinity binding site for Drk SH3 domains in the Sos tail. We show that the N-terminal Drk SH3 domain is primarily responsible for binding to the tail of Sos in vitro, and for signalling to Ras in vivo.     

Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome

Two novel mitochondrial gene arrangements are identified in an agamid lizard and a ranid frog. Statistical tests incorporating phylogeny indicate a link between novel vertebrate mitochondrial gene orders and movement of the origin of light-strand replication. A mechanism involving errors in light-strand replication and tandem duplication of genes is proposed for rearrangement of vertebrate mitochondrial genes. A second mechanism involving small direct repeats also is identified. These mechanisms implicate gene order as a reliable phylogenetic character. Shifts in gene order define major lineages without evidence of parallelism or reversal. The loss of the origin of light-strand replication from its typical vertebrate position evolves in parallel and, therefore, is a less reliable phylogenetic character. Gene junctions also evolve in parallel. Sequencing across multigenic regions, in particular transfer RNA genes, should be a major focus of future systematic studies to locate novel gene orders and to provide a better understanding of the evolution of the vertebrate mitochondrial genome.      

Chiral intermediates in thiamin catalysis: Resolution and pyrophosphorylation of hydroxyethylthiamin

The improved preparation, resolution, and pyrophosphorylation of hydroxyethylthiamin [HET; 2-(1-hydroxyethyl)thiamin] is reported. HET is the chiral precursor to acetaldehyde, formed in the thiamin-catalyzed decarboxylation of pyruvate. The pyrophosphate, HETDP, is the precursor in the corresponding enzymatic process. Resolution of racemic HET was accomplished by formation of the dibenzoyltartrate salt, repeated crystallization from ethanol, and liberation of resolved HET from the resolving agent with 3 m hydrochloric acid. The optical rotation of the isolated material is comparable to that of the diphosphate derivative that has been isolated from an enzymatic reaction. Conversion of HET to the diphosphate provided material that was active in enzymic reactions.     

Impact of roots on ground water quality

Preferential flow is perhaps the major chemical transport process influencing the rapid and typically unexpected movement of agricultural chemicals to ground water. Plant roots are a major contributor to preferential flow mechanics as they form spatial voids which can be used as preferential flow pathways. Chemical transport of atrazine, deethylatrazine, and bromide solutions concentrations under tilled and no-tilled corn fields was evaluated below the active root zone. Additionally, the impact of roots on flow pathways was visualized using a soluble dye (Brilliant Blue FCF). Pictures of the dye-stained pattern were subsequently digitized to determine the cross-sectional area used for transport as a function of depth. Bromide transit times through the field soils were not influenced by tillage practice, whereas atrazine transport was strongly influenced by tillage practice. Under no-till field conditions, atrazine was rarely detected but deethylatrazine concentrations were greater than those observed under tilled field conditions. Visual observation indicated that the dye under no-tillage was more predominant in the corn row, indicative of transport through void root channels. No-tillage practices may decrease the likelihood of ground water contamination through leaching due to the formation of stable root channels where an organic carbon source and microbial population are preferentially located to degrade pesticides.     

Evolutionary relationships among the male and female mitochondrial DNA lineages in the Mytilus edulis species complex

A novel form of mitochondrial DNA (mtDNA) inheritance has previously been documented for the blue mussel (Mytilus edulis). Female mussels inherit their mtDNA solely from their mother while males inherit mtDNA from both their mother and their father. In males, the paternal mtDNA is preferentially amplified so that the male gonad is highly enriched for the paternal mtDNA that is then transmitted from fathers to sons. We demonstrate that this mode of mtDNA inheritance also operates in the closely related species M. galloprovincialis and M. trossulus. The evolutionary relationship between the male and female mtDNA lineages is estimated by phylogenetic analysis of 455 nucleotides from the large subunit ribosomal RNA gene. We have found that the male and female lineages are highly divergent; the divergence of these lineages began prior to the speciation of the three species of blue mussels. Further, the separation between the male and female lineages is estimated to have occurred between 5.3 and 5.7 MYA.