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41.
42.
Hiroshi Shinozuka Melanie L. Hand Noel O. I. Cogan German C. Spangenberg John W. Forster 《Ecology and evolution》2013,3(13):4415-4426
In plant species, control of flowering time is an important factor for adaptation to local natural environments. The Vrn1, CO, FT1 and CK2α genes are key components in the flowering‐specific signaling pathway of grass species. Meadow fescue is an agronomically important forage grass species, which is naturally distributed across Europe and Western Asia. In this study, meadow fescue flowering‐time‐related genes were resequenced to assess nucleotide diversity in European and Western Asian subpopulations. Identified sequence polymorphisms were then converted into PCR‐based molecular genetic markers, and a meadow fescue germplasm collection was genotyped to investigate global allelic variation. Lower nucleotide diversities were observed for the Vrn1 and CO orthologs, while relatively higher values were observed for the FT1 and casein kinase II α‐subunit (CK2α) orthologs. The nucleotide diversity for FT1 orthologs in the Western Asian subpopulation was significantly higher than those of the European subpopulation. Similarly, significant differences in nucleotide diversity for the remaining genes were observed between several combinations of subpopulation. The global allele distribution pattern was consistent with observed level of nucleotide diversity. These results suggested that the degree of purifying selection acting on the genes differs according to geographical location. As previously shown for model plant species, functional specificities of flowering‐time‐related genes may also vary according to environmental conditions. 相似文献
43.
Robert E. Druzinsky James P. Balhoff Alfred W. Crompton James Done Rebecca Z. German Melissa A. Haendel Anthony Herrel Susan W. Herring Hilmar Lapp Paula M. Mabee Hans-Michael Muller Christopher J. Mungall Paul W. Sternberg Kimberly Van Auken Christopher J. Vinyard Susan H. Williams Christine E. Wall 《PloS one》2016,11(2)
Background
In recent years large bibliographic databases have made much of the published literature of biology available for searches. However, the capabilities of the search engines integrated into these databases for text-based bibliographic searches are limited. To enable searches that deliver the results expected by comparative anatomists, an underlying logical structure known as an ontology is required.Development and Testing of the Ontology
Here we present the Mammalian Feeding Muscle Ontology (MFMO), a multi-species ontology focused on anatomical structures that participate in feeding and other oral/pharyngeal behaviors. A unique feature of the MFMO is that a simple, computable, definition of each muscle, which includes its attachments and innervation, is true across mammals. This construction mirrors the logical foundation of comparative anatomy and permits searches using language familiar to biologists. Further, it provides a template for muscles that will be useful in extending any anatomy ontology. The MFMO is developed to support the Feeding Experiments End-User Database Project (FEED, https://feedexp.org/), a publicly-available, online repository for physiological data collected from in vivo studies of feeding (e.g., mastication, biting, swallowing) in mammals. Currently the MFMO is integrated into FEED and also into two literature-specific implementations of Textpresso, a text-mining system that facilitates powerful searches of a corpus of scientific publications. We evaluate the MFMO by asking questions that test the ability of the ontology to return appropriate answers (competency questions). We compare the results of queries of the MFMO to results from similar searches in PubMed and Google Scholar.Results and Significance
Our tests demonstrate that the MFMO is competent to answer queries formed in the common language of comparative anatomy, but PubMed and Google Scholar are not. Overall, our results show that by incorporating anatomical ontologies into searches, an expanded and anatomically comprehensive set of results can be obtained. The broader scientific and publishing communities should consider taking up the challenge of semantically enabled search capabilities. 相似文献44.
45.
Different combinations of morpho‐physiological traits are responsible for tolerance to drought in wild tomatoes Solanum chilense and Solanum peruvianum
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Herbaceous species can modify leaf structure during the growing season in response to drought stress and water loss. Evolution can select combinations of traits in plants for efficient water use in restricted environments. We investigated plant traits that mediate adaptation and acclimation to water stress in two herbaceous drought‐tolerant species. Anatomical, morphological and physiological traits related to stems and leaves were examined under optimal watering (OW) and a long period of restricted watering (RW) in 11 accessions from three Solanaceae species (Solanum chilense, S. peruvianum and S. lycopersicum). The relationships between these traits were tested using linear regression and PCA. There were significant differences in anatomical traits between the species under both OW and RW, where leaf area correlated with stem diameter. Proline and total carbohydrates accumulated highly in S. chilense and S. peruvianum, respectively, and these osmolytes were strongly correlated with increased osmotic potential. Stomatal density varied between species but not between acclimation treatments, while stomatal rate was significantly higher in wild tomatoes. There was a strong positive relationship between stem growth rate and a group of traits together expressed as total stomatal number. Total stomata is described by integration of leaf area, stomatal density, height and internode length. It is proposed that constitutive adaptations and modifications through acclimation that mediate RW play an important role in tolerance to drought stress in herbaceous plants. The capacity for growth under drought stress was not associated with any single combination of traits in wild tomatoes, since the two species differed in relative levels of expression of various phenotypic traits. 相似文献
46.
Kirsten M. Ellegaard Silvia Brochet German Bonilla‐Rosso Olivier Emery Natasha Glover Noushin Hadadi Kamil S. Jaron Jan R. van der Meer Marc Robinson‐Rechavi Vladimir Sentchilo Florian Tagini Philipp Engel 《Molecular ecology》2019,28(9):2224-2237
Bacteria that engage in long‐standing associations with particular hosts are expected to evolve host‐specific adaptations that limit their capacity to thrive in other environments. Consistent with this, many gut symbionts seem to have a limited host range, based on community profiling and phylogenomics. However, few studies have experimentally investigated host specialization of gut symbionts and the underlying mechanisms have largely remained elusive. Here, we studied host specialization of a dominant gut symbiont of social bees, Lactobacillus Firm5. We show that Firm5 strains isolated from honey bees and bumble bees separate into deep‐branching host‐specific phylogenetic lineages. Despite their divergent evolution, colonization experiments show that bumble bee strains are capable of colonizing the honey bee gut. However, they were less successful than honey bee strains, and competition with honey bee strains completely abolished their colonization. In contrast, honey bee strains of divergent phylogenetic lineages were able to coexist within individual bees. This suggests that both host selection and interbacterial competition play important roles in host specialization. Using comparative genomics of 27 Firm5 isolates, we found that the genomes of honey bee strains harbour more carbohydrate‐related functions than bumble bee strains, possibly providing a competitive advantage in the honey bee gut. Remarkably, most of the genes encoding carbohydrate‐related functions were not conserved among the honey bee strains, which suggests that honey bees can support a metabolically more diverse community of Firm5 strains than bumble bees. These findings advance our understanding of the genomic changes underlying host specialization. 相似文献
47.
Benedetta Artegiani Lisa van Voorthuijsen Rik G.H. Lindeboom Daniëlle Seinstra Inha Heo Pablo Tapia Carmen López-Iglesias Daniel Postrach Talya Dayton Rurika Oka Huili Hu Ruben van Boxtel Johan H. van Es Johan Offerhaus Peter J. Peters Jacco van Rheenen Michiel Vermeulen Hans Clevers 《Cell Stem Cell》2019,24(6):927-943.e6
48.
We developed broad-scale habitat selection models for the distribution of red-legged partridge Alectoris rufa in a low-density area in northwestern Spain, the Baixa-Limia site of community importance (SCI). The fieldwork consisted
of ground surveys in 1 × 1 km squares. For habitat selection analysis, we used a 2 × 2 km grid integrating the information
obtained in the 1 × 1 km squares. As predictors we used environmental variables measured on digital 1:50,000 scale cartography
using a geographical information system (GIS). The red-legged partridge was scarce in the study area. The logistic regression
analysis carried out on data from the squares with probable and confirmed breeding included the area of scrubland and pastureland
with a positive sign. Using the breeding index category (BIC) three variables produced a slightly positive response: area
of scrubland and pastureland, length of border between scrublands and forests, and length of border between forests and dams.
The difficulty for modelling the habitat selection of this species could be due to human activities (hunting, habitat loss,
restocking of hunt species), and may have modified their habitat preferences. Furthermore, the occupation of suboptimal habitats
would distort the real habitat preferences. 相似文献
49.
50.
Giacomo Zaccone John Maina Antonino Germanà Giuseppe Montalbano Gioele Capillo Luisa Aragona Michał J. Kuciel Eugenia Rita Lauriano José M. Icardo 《Acta zoologica》2019,100(2):160-166
Available studies that have examined O2 sensing in fish have indicated that oxygen-sensitive neuroepithelial cells (NECs) are O2 sensors in the gills and initiate cardiorespiratory reflexes in aquatic vertebrates. This is the first study describing the occurrence of NECs in accessory respiratory organs in the air-breathing catfish Clarias gariepinus. Immunocytochemical stainings with specific neuronal markers such as nNOS, VAchT, 5-HT and TH have been shown to be very useful for location and distribution of these cells in the gill fans and suprabranchial chamber that take origin from the transformation of the gill tissue. But the response of these putative O2 chemoreceptors, their role in the respiratory reflexes and their innervation await investigation. 相似文献