Transcript profiling of jasmonate‐elicited Taxus cells reveals a β‐phenylalanine‐CoA ligase

Plant cell cultures constitute eco‐friendly biotechnological platforms for the production of plant secondary metabolites with pharmacological activities, as well as a suitable system for extending our knowledge of secondary metabolism. Despite the high added value of taxol and the importance of taxanes as anticancer compounds, several aspects of their biosynthesis remain unknown. In this work, a genomewide expression analysis of jasmonate‐elicited Taxus baccata cell cultures by complementary DNA‐amplified fragment length polymorphism (cDNA‐AFLP) indicated a correlation between an extensive elicitor‐induced genetic reprogramming and increased taxane production in the targeted cultures. Subsequent in silico analysis allowed us to identify 15 genes with a jasmonate‐induced differential expression as putative candidates for genes encoding enzymes involved in five unknown steps of taxane biosynthesis. Among them, the TB768 gene showed a strong homology, including a very similar predicted 3D structure, with other genes previously reported to encode acyl‐CoA ligases, thus suggesting a role in the formation of the taxol lateral chain. Functional analysis confirmed that the TB768 gene encodes an acyl‐CoA ligase that localizes to the cytoplasm and is able to convert β‐phenylalanine, as well as coumaric acid, into their respective derivative CoA esters. β‐phenylalanyl‐CoA is attached to baccatin III in one of the last steps of the taxol biosynthetic pathway. The identification of this gene will contribute to the establishment of sustainable taxol production systems through metabolic engineering or synthetic biology approaches.     

An integrated spectroscopic and wet chemical approach to investigate grass litter decomposition chemistry

The chemical transformations that occur during litter decomposition are key processes for soil organic matter formation and terrestrial biogeochemistry; yet we still lack complete understanding of these chemical processes. Thus, we monitored the chemical composition of Andropogon gerardii (big bluestem grass) litter residue over a 36 month decomposition experiment in a prairie ecosystem using: traditional wet chemical fractionation based upon digestibility, solid state ¹³C nuclear magnetic resonance (NMR) spectroscopy and Fourier transform infrared (FTIR) spectroscopy. The goals of this study were to (1) determine the chemical changes occurring during A. gerardii litter decomposition, and (2) compare the information obtained from each method to assess agreement. Overall, we observed a 97 % mass loss of the original litter, through a two-stage decomposition process. In the first stage, within 12 months, non-structural, cellulose and hemicellulose fractions not encrusted in lignin were preferentially and rapidly lost, while the acid unhydrolyzable residue (AUR) and microbial components increased. During the second stage, 12–36 months, all wet chemical fraction masses decreased equivalently and slowly with time, and the AUR and the lignin-encrusted cellulose fractions decomposition rates were comparable to each other. Method comparisons revealed that wet chemical fractionation did not accurately follow the initial litter structures, particularly lignin, likely because of chemical transformations and accumulation of microbial biomass. FTIR and NMR were able to determine bulk structural characteristics, and aid in elucidating chemical transformations but lacked the ability to measure absolute quantities of structural groups. As a result, we warn from the sole use of wet chemical methods, and strongly encourage coupling them with spectroscopic methods. Our results overall support the traditional chemical model of selective preservation of lignin, but shows that this is limited to the early stages of decomposition, while lignin is not selectively preserved at subsequent stages. Our study also provides important evidence regarding the impact of chemically different litter structures on decomposition rates and pathways.     

Carbon disulfide oxidation by a microbial consortium from a trickling filter

Biological oxidation rates of CS₂ with a mixed microbial culture obtained from a trickling filter were optimal with 3 mM CS₂, pH 7, 30°C and SO₄ ^2– below 25 g l^–1. Degradation rates were 3.4 mg CS₂/g_proteinmin and 13.8 mg H₂S/g_proteinmin. The concentrations of intermediates (H₂S, COS and S°) and the product (SO₄ ^2–) of CS₂ oxidation were measured. The biological oxidation was due principally to Gram negative bacteria.     

Citrate synthase activity increases in homogenates of the cerebral cortex from rats treated with the convulsant 3-mercaptopropionic acid

The administration of the convulsant 3-mercaptopropionic acid (150 mg/kg i.p.) increased the respiratory capacity of mitochondria isolated from rat cerebral cortex. This increase was observed when pyruvate-malate were used as substrates, but oxygen uptake was not activated with succinate, glutamate-malate or α-ketoglutarate. Citrate synthase activity in rat brain homogenates increased (about 40%) after the administration of convulsant doses of 3-mercaptopropionic acid (50 and 150 mg/kg). This effect was found after seizures but not during seizures or after a dose that did not produce convulsions (20 mg/kg). The enhancement of citrate synthase activity was observed at various oxaloacetate concentrations, with an increase in V_max. The enhancement was still evident after incubation and removal of the soluble phase by centrifugation, but not after freeze-thawing.     

Floristic composition and structure of a premontane moist forest in Central Valley of Costa Rica]

The floristic composition and structure of a premontane moist forest remnant were studied in the El Rodeo Protected Zone, Central Valley of Costa Rica. Three one-hectare plots were established in the non-disturbed forest, and all trees with a diameter at breast height (dbh) of 10 cm or greater were marked, measured and identified. The plots were located within a radius of 500 m from each other. A total of 106 tree species were recorded in the three plots. Average values: species richness 69.6 species ha-1, abundance 509 individuals ha-1, basal area 36.35 m2 ha-1. Total diversity was 3.54 (Shannon Index, H'), and the species similarity among the plots ranged between S = 0.68 and 0.70 (S?rensen Similarity Index). Most tree species are represented by few individuals (five or less). There is a lack of emergent trees and arborescent palms in the forest canopy. According to the Familial Importance Value, Moraceae, followed by Fabaceae, Lauraceae, and Sapotaceae, largely dominates this forest. Pseudolmedia oxyphillaria (Moraceae) is the dominant species (Importance Value Index), accounting for 25% of all the marked trees in the plots, followed by Clarisia racemosa (Moraceae), Heisteria concinna (Olacaceae), and Brosimum alicastrum (Moraceae). The size class distributions were similar among plots, and in general followed the expected J-inverted shape. Differences in tree abundance, floristic composition, and spatial distribution of some species among the plots suggest heterogeneity of this ecosystem's arborescent vegetation. Moreover, it is an important natural reservoir for the conservation of rare and endangered tree species in a national level. Using these results as a baseline, this study should start a long term monitoring of the structure and composition of this very reduced and fragmented ecosystem.     

Calorimetric investigation of the protein-flexible chain polymer interactions and its relationship with protein partition in aqueous two-phase systems

The binding of polyethyleneglycol of molecular mass 1000, 3300 and 6000 and polyethylene-propylene oxide (molecular mass 8400) to lysozyme and ovoalbumin was measured by isothermal calorimetric titration. A binding process was found to be associated with a saturation effect, which suggests a protein-polymer interaction. The proteins showed an affinity for the polymers in the order of 10(2)M(-1) and it decreased with the increase in the polymer molecular mass. The number of polymer molecules bound per protein molecule varied from 0.01 to 0.2 for polyethyleneglycol 1000, 3300 and polyethylene-polypolypropylene oxide 8400, while for polyethyleneglycol 6000 such number got closer to the unity. The enthalpic change associated with the binding was positive in the order of 1 kcal/mol for lysozyme, while ovoalbumin showed values around 2-3 kcal/mol. Entropic changes were also positive with values around 17-20 e.u. for ovoalbumin and 1-7 e.u. for lysozyme. The heat associated with the protein transfer from a buffer to a medium containing the polymer or the salt (a process similar to protein partitioning in aqueous two-phase systems) was obtained. These results allow the direct calculation of the enthalpic change associated with a protein partition process in aqueous two-phase systems without applying the van'tHoff equation. In this way, it is possible to calculate the associated true heat when the protein is transferred from the bottom to the top phase.