Molecular Mapping and Character Tagging in Mustard (Brassica juncea) II. Association of RFLP markers with Seed Coat Colour and Quantitative Traits

In Brassica juncea, segregation of 44 RFLP markers generated by homologous genomic DNA clones as probes was studied in a F₂ population obtained from an intervarietal cross. Linkage relationship among the markers was established using computer package ‘MAPMAKER’. Twenty five of the markers could be arranged in nine linkage groups, covering a total of 243.3 cM. Marker BJG357c showed tight linkage (3.9 cM) with yellow seed coat colour locus (r ₁). Based on single factor analysis of variance,17 significant marker-trait associations could be established in respect of six quantitative traits viz. days to flowering, plant height, number of primary branches, secondary branches per primary branch, siliquea per secondary branch, and seeds per siliqua. The proportion of phenotypic variation explained by individual marker-trait association ranged from 3.0% to 33.2%. The putative gene action at majority of the marked genomic regions was found to be partial dominance to dominance.