Cystatins, thyropins and inhibitors homologous to propeptides of cysteine proteases

Protein inhibitors of proteolytic enzymes play an important role in regulating the activity of endogenous proteases and in host defense mechanisms against pathogens preventing the deleterious effects of exogenous proteases. In recent years a great interest in protein inhibitors of cysteine proteases has increased due to the extensive growth of knowledge about the contribution of cysteine proteases to pathological processes associated with many human diseases, as well as due to prospects for treatment of these disorders which may arise from the thorough understanding of their inhibitory mechanisms. This paper reviews the most important aspects of three families of cysteine protease inhibitors: cystatins, thyropins and inhibitors homologous to propeptides of cysteine proteases. Special attention is given to structural bases of the interactions between the inhibitors and their target enzymes. The paper presents a general characterization of the families according to the MEROPS classification of protease inhibitors, pointing out new members.     

Protein evolution in different cellular environments: cytochrome b in sharks and mammals

DNA sequences for the mitochondrial cytochrome b gene were determined for 13 species of sharks. Rates and patterns of amino acid replacement are compared for sharks and mammals. Absolute rates of cytochrome b evolution are six times slower in sharks than in mammals. Bivariate plots of the number of nonsynonymous and silent transversions are indistinguishable in the two groups, however, suggesting that the differences in amino acid replacement rates are due primarily to differences in DNA substitution rates. Patterns of amino acid replacement are also similar in the two groups. Conserved and variable regions occur in the same parts of the cytochrome b gene, and there is little evidence that the types of amino acid changes are significantly different between the groups. Similarity in the relative rates and patterns of protein change between the two groups prevails despite dramatic differences in the cellular environments of sharks and mammals. Poor penetrance of physiological differences through to rates of protein evolution provides support for the neutral theory and suggests that, for cytochrome b, patterns of evolution have been relatively constant throughout much of vertebrate history.      

Antioxidants activities and concentration of selenium,zinc and copper in preterm and IUGR human placentas

The aim of this study was to examine changes in activities of cytochrome c oxidase (CCO), glucose-6-phosphate dehydrogenase (G6PDH), Cu–Zn superoxide dismutase (Cu–Zn SOD), glutathione peroxidase (GSH-Px), glutathione (GSH) levels and copper (Cu), zinc (Zn) and selenium (Se) concentrations, and to assess the possible differences between preterm placentas, placentas from term pregnancies complicated by intrauterine growth restriction (IUGR) and full-term control placentas.The enzyme activities and the level of GSH decreased in IUGR and preterm placentas in comparison with the control group. CCO activity and GSH level in preterm placentas were markedly lower compared with the IUGR (P<0.01; P<0.05) and control (P<0.01; P<0.05) placentas, respectively. In IUGR placentas the level of Cu was reduced by 23% (P<0.05) and Zn by 37%. In preterm placentas the level of Cu was reduced by 19% and Zn by 42%. Se level in IUGR and preterm placentas was higher (P<0.05) by 28% and 32% than in control group, respectively. The strong relation was observed between birth weight and CCO activity, birth weight and Cu–Zn SOD activity, and a low level of Zn and Cu influenced the birth weight especially in IUGR cases. Moreover, the strong inverse correlation between Se level and birth weight, Se level and placental weight and Se level and CCO activity are new findings.     

Codon usage bias analysis of genes linked with esophagus cancer

Esophageal cancer involves multiple genetic alternations. A systematic codon usage bias analysis was completed to investigate the bias among the esophageal cancer responsive genes. GC-rich genes were low (average effective number of codon value was 49.28). CAG and GTA are over-represented and under-represented codons, respectively. Correspondence analysis, neutrality plot, and parity rule 2 plot analysis confirmed the dominance over mutation pressure in modulating the codon usage pattern of genes linked with esophageal cancer.     

FINE STRUCTURE AND CYTOCHEMISTRY OF LILIUM POLLEN TUBES

Growth of the Lilium longiflorum pollen tube in vitro is restricted to a zone extending back 3–5 μ from the tip. Electron micrographs of cross and longitudinal thin sections of L. longiflorum and L. regale pollen tubes reveal that the cytoplasm of the nongrowing region of the tube contains an abundance of mitochondria, amyloplasts, Golgi bodies, endoplasmic reticulum, lipid bodies, and vesicles. In contrast, the growing tip is characterized by an abundance of vesicles and an absence of other cytoplasmic elements. The vesicles appear to be of 2 types. One is spherical, about 0.1 μ in diameter, stains strongly with phosphotungstic acid, apparently arises from the Golgi apparatus and appears to contribute to tube wall and plasmalemma formation. The other type is irregular in shape, 0.01-0.05 μ in diameter, stains strongly with lead hydroxide, and is of unknown origin and function. Cytochemical analysis indicates that the tips of L. longiflorum pollen tubes are singularly rich in ribonucleic acid, protein, and carbohydrate. These findings are discussed in relation to tube growth.     

AN ULTRASTRUCTURAL STUDY OF TRANSMITTING TISSUE DEVELOPMENT IN THE PISTIL OF LILIUM LEUCANTHUM

A study of developing transmitting tissue of Lilium Leucanthum pistils was undertaken in order to correlate structure with function. Lining the stylar canal are stigmatoid cells which contain a secretory zone consisting of a labyrinth of wall ingrowths characteristic of transfer cells. The functional feature of the labyrinth is a high surface-to-volume ratio that facilitates an intensive transmembrane flux of solutes. Stigmatoid cells in various stages of development and maturation have been investigated with the aid of electron and light optics in conjunction with cytochemical techniques. During development of the secretory zone, vesicles, formed by hypersecretory dictyosomes, fuse with the plasma membrane and contribute their contents to the growing wall. The pattern of secretory zone development is basipetal and is associated with initiation of chemotropism. In a mature pistil large crystals, having a basipetal pattern of development, and sensitive to protease, can be observed in the cytoplasm of stigmatoid cells. At anathesis, degradation of the crystal can be observed in the cells of the stigma surface and progresses basipetally as the pistil ages. The role of the crystal is uncertain. Immature pistils cultured in the presence of labeled proline take up the label which at maturity of the pistil is transferred to the canal of the pistil. The label is found in the crystals and the secretory zone of the stigmatoid cells. Pollen tubes growing in the canal of a labeled pistil take up the label.     

Genomic affinities in Arachis section Arachis (Fabaceae): molecular and cytogenetic evidence

Section Arachis is the largest of nine sections in the genus Arachis and includes domesticated peanut, A. hypogaea L. Most species are diploids (x=10) with two tetraploids and a few aneuploids. Three genome types have been recognized in this section (A, B and D), but the genomes are not well characterized and relationships of several newly described species are uncertain. To clarify genomic relationships in section Arachis, cytogenetic information and molecular data from amplified fragment length polymorphism (AFLP) and the trnT-F plastid region were used to provide an additional insight into genome composition and species relationships. Cytogenetic information supports earlier observations on genome types of A. cruziana, A. herzogii, A. kempff-mercadoi and A. kuhlmannii but was inconclusive about the genome composition of A. benensis, A. hoehnei, A. ipaensis, A. palustris, A. praecox and A. williamsii. An AFLP dendrogram resolved species into four major clusters and showed A. hypogaea grouping closely with A. ipaensis and A. williamsii. Sequence data of the trnT-F region provided genome-specific information and showed for the first time that the B and D genomes are more closely related to each other than to the A genome. Integration of information from cytogenetics and biparentally and maternally inherited genomic regions show promise in understanding genome types and relationships in Arachis.