Effect of simazine,lindane and ceresan on soil respiration and nitrification rates

Summary The effect of three pesticidesviz, simazine, lindane and ceresan upto 100-fold of field application was studied on organic matter mineralization as well as on nitrification rates in Delhi alluvial soil. The normal rate of simazine (2 ppm) did not influence CO₂ evolution but higher concentrations suppressed it. Lindane and ceresan inhibited CO₂ production from soil by normal concentrations but the same CO₂ production was enhanced in berseem roots treated soil upto 10 ppm of ceresan.The nitrification of ammonium sulphate in soil due to these pesticides was impaired significantly for varying periods. The inhibitory effect of higher concentrations was marked only upto 3 weeks, subsequently the rate of nitrification was restored. Among the nitrifiers, Nitrobacter were more susceptible as compared to Nitrosomonas.     

Electron microscopy of some rock phosphate dissolving bacteria and fungi

BacteriaPseudomonas striata, Bacillus polymyxa, B. megaterium andB. pulvifaciens, and fungiAspergillus awamori, A. niger andPenicillium digitatum dissolve tricalcium phosphate and, much less, Mussorie and Udaipur rock phosphate. The solubilizing power of fungi was higher than that of bacteria, the highest being withA. awamori andA. niger, and withP. striata. Electron microscopy of the various cultures showed an electron-dense layer on the bacterial surface after negative staining. The size of phosphate particles decreased by the microbial action, with tricalcium phosphate from 140 — 250 to 30 — 90 nm after three weeks of incubation.     

Integrative Bayesian models using Post-selective inference: A case study in radiogenomics

Integrative analyses based on statistically relevant associations between genomics and a wealth of intermediary phenotypes (such as imaging) provide vital insights into their clinical relevance in terms of the disease mechanisms. Estimates for uncertainty in the resulting integrative models are however unreliable unless inference accounts for the selection of these associations with accuracy. In this paper, we develop selection-aware Bayesian methods, which (1) counteract the impact of model selection bias through a “selection-aware posterior” in a flexible class of integrative Bayesian models post a selection of promising variables via ℓ₁-regularized algorithms; (2) strike an inevitable trade-off between the quality of model selection and inferential power when the same data set is used for both selection and uncertainty estimation. Central to our methodological development, a carefully constructed conditional likelihood function deployed with a reparameterization mapping provides tractable updates when gradient-based Markov chain Monte Carlo (MCMC) sampling is used for estimating uncertainties from the selection-aware posterior. Applying our methods to a radiogenomic analysis, we successfully recover several important gene pathways and estimate uncertainties for their associations with patient survival times.     

The effect of humic and fulvic acids on the growth and efficiency of nitrogen fixation ofAzotobacter chroococcum

Humic acid in the form of sodium humate and fulvic acid markedly increased the growth and efficiency of nitrogen fixation ofAzotobacter chroococcum. Fulvic acid proved more effective than the sodium humate. The effectiveness of these substances was more pronounced in increasing the number of cells than affecting the nitrogen fixation. The increases in growth and nitrogen fixation were in direct proportion to the quantities of sodium humate and fulvic acid applied up to 500 and 700 ppm respectively. Thereafter the growth was restricted, although it was not inhibited even at 1,400 ppm.     

Research progress in allele-specific expression and its regulatory mechanisms

Although the majority of genes are expressed equally from both alleles, some genes are differentially expressed. Organisms possess characteristics to preferentially express a particular allele under regulatory factors, which is termed allele-specific expression (ASE). It is one of the important genetic factors that lead to phenotypic variation and can be used to identify the variance of gene regulation factors. ASE indicates mechanisms such as DNA methylation, histone modifications, and non-coding RNAs function. Here, we review a broad survey of progress in ASE studies, and what this simple yet very effective approach can offer in functional genomics, and possible implications toward our better understanding of the underlying mechanisms of complex traits.     

Shift in Cyanobacteria Community Diversity in Hot Springs of India

Two ecologically distinct tropical sulfur-rich alkaline hot springs, Taptapani at 48°C harboring mesophiles and Atri at 58°C comprising thermophiles situated in the Eastern Ghats foothills of India, differ in their geochemical conditions, and provide an interesting platform to unravel the eco-physiological reasons behind the differential cyanobacterial diversity. The predominance of mesophilic Arthronema (83.81%) in Taptapani and shifting predominance of thermophilic Leptolyngbya (96.25%) in Atri as discovered through 16S rRNA gene Illumina sequencing of their metagenomics DNA as a function of temperature are the intriguing features of the present study. Differential presence of the cyanobacterial community at the phylum level in these two hot springs was found to be correlated with the unequal coexistence of Chloroflexi, Taptapani the non-cyanobacteria members and the possible influence of physiochemical parameters including temperature. Variation in cyanobacterial diversity and composition of these hot springs as revealed through sequence analysis were also evinced by respective differences in richness, evenness, and Shannon diversity indices.     

Surface area‐to‐volume ratio,not cellular viscoelasticity,is the major determinant of red blood cell traversal through small channels

The remarkable deformability of red blood cells (RBCs) depends on the viscoelasticity of the plasma membrane and cell contents and the surface area to volume (SA:V) ratio; however, it remains unclear which of these factors is the key determinant for passage through small capillaries. We used a microfluidic device to examine the traversal of normal, stiffened, swollen, parasitised and immature RBCs. We show that dramatic stiffening of RBCs had no measurable effect on their ability to traverse small channels. By contrast, a moderate decrease in the SA:V ratio had a marked effect on the equivalent cylinder diameter that is traversable by RBCs of similar cellular viscoelasticity. We developed a finite element model that provides a coherent rationale for the experimental observations, based on the nonlinear mechanical behaviour of the RBC membrane skeleton. We conclude that the SA:V ratio should be given more prominence in studies of RBC pathologies.