Comparative Analysis of 16S rRNA Gene Illumina Sequence for Microbial Community Structure in Diverse Unexplored Hot Springs of Odisha,India

Odisha (East India) is home to several hot springs, of which Atri and Taptapani are the two with variation in temperature and located in the Mahanadi geothermal province having altitude 120 and 1800 ft., respectively, above sea level. Average temperature of Atri hot spring is as higher as 58 ± 5°C as compared to 48 ± 5°C of Taptapani. In-depth analysis of the microbial diversity of these hot springs through 16S rRNA deep sequencing analysis, targeting V3 region was performed using Illumina bar-coded sequencing platform. Existence of higher microbial diversity in Atri hot spring (1662 OTUs; 2708 species) as compared to Taptapani (1561 Operational Taxonomic Units [OTUs]; 2045 species) is supported by higher value of diversity indices for Atri (6.24, Shannon; 0.95, Simpson) than Taptapani (4.03, Shannon; 0.79, Simpson), probably due to favorable influence of environmental parameters around it. Irrespective of the four databases (GREENGENE, M5RNA, Ribosomal Database Project [RDP], and Small Subunit [SSU] databases) used for understanding community structure, the dominant phyla in the Atri hot spring were different from the predominant populations in the Taptapani in terms of percentage representation in different databases. From Principal Coordinates Analysis [PCoA] analysis, Atri and Taptapani metagenome, on comparison with other three metagenomes, were found to be matching with the community structure of hot springs of Gujarat, India, but differed from that of saline desert. Furthermore, predicted functional analysis in both the hot springs were found to be affiliated with carbohydrate, amino acids, energy, vitamins and cofactor, nucleotide, membrane transport metabolic pathways, and the genes involved in them, although their intensity of occurrence was varying as analyzed through PICRUSt and Tax4Fun probably due to physicochemical parameters prevailing around each hot spring. The present study for the first time has revealed the differential microbial community structure and predicted functional diversity of Atri and Taptapani hot springs of Odisha in such a great detail.     

Effect of simazine,lindane and ceresan on soil respiration and nitrification rates

Summary The effect of three pesticidesviz, simazine, lindane and ceresan upto 100-fold of field application was studied on organic matter mineralization as well as on nitrification rates in Delhi alluvial soil. The normal rate of simazine (2 ppm) did not influence CO₂ evolution but higher concentrations suppressed it. Lindane and ceresan inhibited CO₂ production from soil by normal concentrations but the same CO₂ production was enhanced in berseem roots treated soil upto 10 ppm of ceresan.The nitrification of ammonium sulphate in soil due to these pesticides was impaired significantly for varying periods. The inhibitory effect of higher concentrations was marked only upto 3 weeks, subsequently the rate of nitrification was restored. Among the nitrifiers, Nitrobacter were more susceptible as compared to Nitrosomonas.     

Electron microscopy of some rock phosphate dissolving bacteria and fungi

BacteriaPseudomonas striata, Bacillus polymyxa, B. megaterium andB. pulvifaciens, and fungiAspergillus awamori, A. niger andPenicillium digitatum dissolve tricalcium phosphate and, much less, Mussorie and Udaipur rock phosphate. The solubilizing power of fungi was higher than that of bacteria, the highest being withA. awamori andA. niger, and withP. striata. Electron microscopy of the various cultures showed an electron-dense layer on the bacterial surface after negative staining. The size of phosphate particles decreased by the microbial action, with tricalcium phosphate from 140 — 250 to 30 — 90 nm after three weeks of incubation.     

The effect of humic and fulvic acids on the growth and efficiency of nitrogen fixation ofAzotobacter chroococcum

Humic acid in the form of sodium humate and fulvic acid markedly increased the growth and efficiency of nitrogen fixation ofAzotobacter chroococcum. Fulvic acid proved more effective than the sodium humate. The effectiveness of these substances was more pronounced in increasing the number of cells than affecting the nitrogen fixation. The increases in growth and nitrogen fixation were in direct proportion to the quantities of sodium humate and fulvic acid applied up to 500 and 700 ppm respectively. Thereafter the growth was restricted, although it was not inhibited even at 1,400 ppm.     

Research progress in allele-specific expression and its regulatory mechanisms

Although the majority of genes are expressed equally from both alleles, some genes are differentially expressed. Organisms possess characteristics to preferentially express a particular allele under regulatory factors, which is termed allele-specific expression (ASE). It is one of the important genetic factors that lead to phenotypic variation and can be used to identify the variance of gene regulation factors. ASE indicates mechanisms such as DNA methylation, histone modifications, and non-coding RNAs function. Here, we review a broad survey of progress in ASE studies, and what this simple yet very effective approach can offer in functional genomics, and possible implications toward our better understanding of the underlying mechanisms of complex traits.